Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 1.2e-241 839.3 409 100.0
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 3.2e-218 761.5 409 87.3
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.2e-218 761.5 409 87.8
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 2.1e-217 758.8 406 88.4
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.7e-217 758.4 409 88.3
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 6.1e-217 757.3 410 87.1
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 1.0e-216 756.5 407 87.5
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 1.0e-216 756.5 410 87.6
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.0e-216 756.5 410 87.1
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.0e-216 756.5 409 87.0
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 1.4e-216 756.1 405 87.9
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.8e-216 755.7 409 87.8
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.3e-216 755.4 409 87.8
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 3.0e-216 755.0 409 86.6
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 8.8e-216 753.4 409 87.3
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.2e-215 753.1 409 86.3
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.2e-215 753.1 409 87.0
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.5e-215 752.7 409 87.3
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.0e-215 752.3 409 86.6
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.4e-215 751.5 409 86.1
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 3.4e-215 751.5 408 87.0
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 3.4e-215 751.5 409 85.8
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 3.4e-215 751.5 407 86.7
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 3.4e-215 751.5 409 87.0
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 7.5e-215 750.4 409 86.8
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 7.5e-215 750.4 409 87.0
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 1.3e-214 749.6 406 87.2
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 1.7e-214 749.2 409 86.1
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.7e-214 749.2 409 86.1
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 3.7e-214 748.0 405 86.9
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 8.3e-214 746.9 409 86.1
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.1e-213 746.5 409 86.6
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.1e-213 746.5 404 86.6
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.8e-213 745.7 404 86.4
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.8e-213 745.7 409 85.6
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 4.1e-213 744.6 406 86.7
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 7.0e-213 743.8 404 86.6
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 9.1e-213 743.4 404 86.4
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.2e-212 743.0 406 85.7
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 1.6e-212 742.7 406 86.2
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.0e-212 742.3 409 85.8
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 2.0e-212 742.3 406 86.2
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.0e-212 742.3 448 79.9
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 2.0e-212 742.3 404 86.4
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 4.5e-212 741.1 406 85.7
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 5.9e-212 740.7 409 85.6
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 5.9e-212 740.7 409 84.6
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 2.3e-211 738.8 409 85.1
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.3e-211 738.8 409 85.1
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.9e-211 738.4 406 85.7
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 2.9e-211 738.4 406 85.7
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 2.9e-211 738.4 406 85.7
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 2.9e-211 738.4 411 85.9
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 2.9e-211 738.4 409 85.1
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 3.8e-211 738.0 406 86.7
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 5.0e-211 737.6 409 84.8
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 6.6e-211 737.3 406 85.2
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 8.6e-211 736.9 406 84.7
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 8.6e-211 736.9 407 85.0
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.9e-210 735.7 406 85.0
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 3.3e-210 734.9 404 85.4
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 5.5e-210 734.2 425 83.1
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 9.5e-210 733.4 406 85.7
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 9.5e-210 733.4 406 85.0
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.2e-209 733.0 410 83.9
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.2e-209 733.0 404 85.1
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 1.6e-209 732.6 406 85.0
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.6e-209 732.6 406 84.5
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 1.6e-209 732.6 406 85.0
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 2.1e-209 732.3 406 85.0
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.1e-209 732.3 406 84.7
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 4.7e-209 731.1 406 84.7
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 8.0e-209 730.3 406 84.5
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 1.0e-208 729.9 406 84.2
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.4e-208 729.6 452 78.8
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 1.4e-208 729.6 406 84.7
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 1.8e-208 729.2 406 84.5
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.8e-208 729.2 406 84.5
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 2.3e-208 728.8 404 85.6
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 3.0e-208 728.4 406 84.7
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 3.0e-208 728.4 404 84.9
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 4.0e-208 728.0 406 84.0
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.2e-207 726.5 405 84.2
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 2.0e-207 725.7 421 81.9
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 3.4e-207 724.9 409 83.1
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 3.4e-207 724.9 405 84.9
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 9.8e-207 723.4 409 82.9
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 1.3e-206 723.0 409 82.9
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 1.7e-206 722.6 409 82.4
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 1.7e-206 722.6 409 82.6
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 1.7e-206 722.6 409 82.4
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 2.2e-206 722.2 409 82.4
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 2.2e-206 722.2 409 82.9
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 2.2e-206 722.2 409 82.6
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 2.8e-206 721.8 409 83.1
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 2.8e-206 721.8 452 77.2
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.8e-206 721.8 406 84.2
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 6.3e-206 720.7 409 82.6
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 6.3e-206 720.7 409 82.6
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 1.4e-205 719.5 409 82.6
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 3.1e-205 718.4 436 78.9
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 4.1e-205 718.0 406 82.8
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 9.2e-205 716.8 407 83.3
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.2e-204 716.5 406 82.0
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 3.5e-204 714.9 476 74.4
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 7.8e-204 713.8 410 82.4
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 7.8e-204 713.8 377 88.6
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.3e-203 713.0 406 82.3
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 3.8e-203 711.4 396 84.8
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 5.0e-203 711.1 410 81.7
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 5.0e-203 711.1 410 81.7
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 6.1e-201 704.1 385 86.5
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 7.0e-197 690.6 520 67.3
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 9.2e-197 690.3 415 80.5
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.2e-196 689.9 386 84.7
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.7e-195 686.0 381 84.8
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 1.9e-194 682.6 413 78.9
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 2.6e-191 672.2 410 78.8
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 9.2e-189 663.7 358 86.3
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 3.0e-187 658.7 409 74.6
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 6.6e-187 657.5 356 86.2
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 1.6e-185 652.9 402 76.1
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 4.7e-185 651.4 379 79.4
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 1.9e-181 639.4 406 76.6
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 6.0e-180 634.4 358 82.1
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 9.5e-178 627.1 404 72.8
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 9.5e-178 627.1 405 72.3
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 8.9e-176 620.5 380 75.0
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 2.6e-175 619.0 406 73.4
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 8.7e-171 604.0 320 87.8
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 3.8e-166 588.6 400 69.2
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 4.9e-158 561.6 387 71.6
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 2.0e-151 539.7 409 66.7
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.5e-151 538.5 361 72.6
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.2e-143 513.8 310 81.0
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.6e-140 503.4 400 60.5
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 1.8e-128 463.4 368 62.0
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 6.9e-128 461.5 245 88.2
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 4.5e-127 458.8 258 82.9
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 6.7e-123 444.9 385 57.1
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 9.4e-117 424.5 238 83.6
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 2.4e-112 409.8 225 85.3
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 3.7e-105 386.0 239 75.7
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 2.4e-96 356.7 197 84.8
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 6.8e-83 312.0 419 42.7
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 9.5e-77 291.6 390 43.6
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 3.2e-72 276.6 180 75.0
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 2.0e-66 257.3 180 68.9
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.2e-58 231.5 141 75.9
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 2.0e-58 230.7 140 76.4
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 8.7e-54 215.3 124 79.8
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.5e-47 193.4 104 89.4
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 7.4e-21 105.9 64 71.9
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 5.3e-19 99.8 58 72.4
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 7.9e-15 85.9 333 25.5
MSTRG.20303 Avicennia marina HOM05D006894 ORTHO05D008724 3.3e-13 80.5 333 24.0
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 7.4e-13 79.3 319 25.7


User provided reference genes

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