Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.6e-194 682.6 343 100.0
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 7.2e-187 657.1 345 97.1
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 9.9e-128 460.7 333 68.8
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 2.4e-126 456.1 333 68.2
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 5.4e-126 454.9 332 68.4
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 5.4e-126 454.9 332 67.5
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.7e-125 452.6 332 67.8
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 4.6e-125 451.8 330 64.5
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 4.6e-125 451.8 332 66.9
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.0e-124 450.7 332 67.2
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.8e-124 449.9 332 66.9
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 1.8e-124 449.9 330 65.2
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 1.8e-124 449.9 342 65.2
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.0e-124 449.1 331 65.6
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 6.7e-124 448.0 332 67.8
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 1.1e-123 447.2 330 64.5
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 1.1e-123 447.2 341 64.8
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 1.1e-123 447.2 330 67.0
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.9e-123 446.4 330 64.5
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 7.4e-123 444.5 333 65.5
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 9.6e-123 444.1 330 67.9
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 1.6e-122 443.4 333 64.9
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 3.7e-122 442.2 331 65.6
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 3.7e-122 442.2 332 65.7
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 3.7e-122 442.2 330 63.6
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 8.1e-122 441.0 330 64.8
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 8.1e-122 441.0 332 65.4
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 1.1e-121 440.7 332 65.7
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 1.1e-121 440.7 332 65.4
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.4e-121 440.3 330 63.9
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 3.1e-121 439.1 333 65.5
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 4.0e-121 438.7 330 63.3
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 4.0e-121 438.7 332 65.4
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 9.0e-121 437.6 330 64.2
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 9.0e-121 437.6 332 65.4
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 9.0e-121 437.6 333 66.1
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 2.6e-120 436.0 333 65.5
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 4.5e-120 435.3 331 65.3
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 5.8e-120 434.9 332 66.0
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 5.8e-120 434.9 330 63.9
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 5.8e-120 434.9 333 65.5
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 9.9e-120 434.1 330 63.9
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 9.9e-120 434.1 333 64.6
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 1.3e-119 433.7 330 63.6
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 1.7e-119 433.3 333 64.0
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 1.7e-119 433.3 333 65.5
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.9e-119 431.8 318 67.3
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 8.4e-119 431.0 332 64.8
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 8.4e-119 431.0 331 63.7
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 1.1e-118 430.6 330 63.6
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.1e-118 430.6 335 63.9
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 1.1e-118 430.6 333 64.0
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.4e-118 430.3 330 63.6
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.4e-118 430.3 318 67.3
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.9e-118 429.9 318 67.0
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 2.5e-118 429.5 330 63.6
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 4.2e-118 428.7 331 64.0
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 1.2e-117 427.2 333 63.4
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 4.6e-117 425.2 317 64.7
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 6.7e-116 421.4 331 63.7
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 1.9e-115 419.9 333 62.5
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 4.3e-115 418.7 330 60.3
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 2.1e-114 416.4 318 67.0
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 3.7e-114 415.6 332 62.3
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 1.8e-113 413.3 324 63.9
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 4.0e-113 412.1 331 62.8
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 4.0e-113 412.1 335 62.4
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 5.3e-113 411.8 332 62.3
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 1.2e-112 410.6 320 63.1
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 5.8e-112 408.3 333 60.4
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 1.7e-111 406.8 344 57.8
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 6.5e-111 404.8 333 60.7
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 1.1e-110 404.1 334 60.5
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 4.2e-110 402.1 321 62.9
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 7.1e-110 401.4 344 57.0
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 9.3e-110 401.0 326 62.3
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.6e-109 400.2 335 60.9
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 4.6e-109 398.7 317 63.4
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 6.0e-109 398.3 318 61.6
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 6.0e-109 398.3 335 59.7
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 1.3e-108 397.1 333 59.8
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 1.8e-108 396.7 335 59.7
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 2.3e-108 396.4 331 60.4
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 8.7e-108 394.4 321 61.7
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 3.3e-107 392.5 332 58.4
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 7.4e-107 391.3 336 59.5
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 9.7e-107 391.0 319 61.1
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 6.3e-106 388.3 319 59.9
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 5.3e-105 385.2 394 51.0
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 5.9e-104 381.7 333 58.9
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 5.9e-104 381.7 320 59.4
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 2.9e-103 379.4 336 57.4
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 3.2e-102 375.9 292 62.0
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.6e-101 373.6 268 64.9
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 3.6e-101 372.5 342 56.4
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.0e-100 370.9 240 70.8
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 2.3e-100 369.8 333 54.7
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 3.0e-100 369.4 333 56.8
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 3.9e-100 369.0 295 63.4
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 6.7e-100 368.2 335 56.7
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 1.3e-98 364.0 275 61.8
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.7e-98 362.5 326 58.9
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 1.8e-97 360.1 271 64.9
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 1.8e-97 360.1 271 64.9
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 5.3e-97 358.6 268 63.1
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 2.6e-96 356.3 332 55.1
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 4.5e-96 355.5 268 66.8
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 8.5e-95 351.3 330 54.5
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 3.2e-94 349.4 293 61.8
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.4e-92 344.0 268 62.3
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 1.8e-92 343.6 333 52.6
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 8.2e-90 334.7 268 60.4
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.4e-89 334.0 324 52.8
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.4e-89 333.2 368 50.8
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 5.9e-88 328.6 320 52.8
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 3.8e-87 325.9 345 50.7
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 5.0e-87 325.5 255 63.9
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 5.5e-86 322.0 306 55.2
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 6.1e-85 318.5 332 48.2
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 7.4e-83 311.6 247 60.3
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 7.0e-81 305.1 206 69.9
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 8.3e-74 281.6 201 67.7
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 2.1e-69 266.9 178 71.3
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.0e-68 264.6 131 100.0
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 6.8e-68 261.9 246 53.7
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 4.4e-67 259.2 195 65.6
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.5e-67 258.5 356 42.4
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 4.8e-66 255.8 289 42.9
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 9.5e-62 241.5 157 68.8
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 4.5e-56 222.6 257 44.0
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 1.9e-54 217.2 249 45.0
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 5.6e-54 215.7 339 40.1
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.4e-49 200.3 162 59.3
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 3.2e-49 199.9 286 37.8
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 7.0e-49 198.7 139 67.6
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.2e-48 198.0 166 60.8
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 8.9e-44 181.8 208 47.6
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 1.2e-43 181.4 205 49.8
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 4.4e-43 179.5 125 81.6
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 7.5e-43 178.7 208 47.1
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 4.3e-38 162.9 161 50.9
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 1.6e-37 161.0 298 34.9
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 4.2e-25 119.8 82 67.1
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 1.1e-22 111.7 118 50.0
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 1.6e-21 107.8 260 29.6
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 4.8e-21 106.3 120 45.8
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 8.4e-18 95.5 111 43.2
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.2e-11 75.1 90 46.7
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.2e-11 75.1 90 46.7
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 1.5e-11 74.7 58 63.8
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 2.4e-09 67.4 71 46.5
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 2.4e-09 67.4 49 65.3
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 3.5e-08 63.5 63 47.6
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.9e-08 62.4 48 52.1


User provided reference genes

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