Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01527 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 1.5e-69 266.2 139 100.0
Aqoxy1G03455 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.0e-19 98.6 138 40.6
Aqoxy5G00081 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 3.4e-18 95.5 138 39.9
Aqoxy7G02997 Aquilegia oxysepala HOM05D008675 ORTHO05D000022 7.6e-18 94.4 139 38.8
Aqoxy7G02362 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.3e-16 87.4 139 40.3
QL01p018268 Quercus lobata HOM05D000155 ORTHO05D000022 4.6e-15 85.1 135 37.0
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 1.0e-14 84.0 134 38.1
Aqoxy1G02301 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 6.6e-14 81.3 110 43.6
Aqoxy2G02424 Aquilegia oxysepala HOM05D000003 ORTHO05D008897 1.1e-13 80.5 65 67.7
QL01p016208 Quercus lobata HOM05D000155 ORTHO05D000022 1.6e-12 76.6 134 32.1
QL01p016211 Quercus lobata HOM05D000155 ORTHO05D000022 1.6e-12 76.6 134 32.1
QL01p016224 Quercus lobata HOM05D000155 ORTHO05D000022 4.8e-12 75.1 134 31.3
RcHm_v2.0_Chr5g0038961 Rosa chinensis HOM05D008833 ORTHO05D000167 3.1e-11 72.4 132 36.4
QL03p010769 Quercus lobata HOM05D000155 ORTHO05D000022 1.2e-10 70.5 135 31.9
CSS0047653 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.5e-10 70.1 128 35.9
Actinidia31778 Actinidia chinensis HOM05D000155 ORTHO05D000022 7.6e-10 67.8 134 35.8
Actinidia24692 Actinidia chinensis HOM05D000155 ORTHO05D000022 1.3e-09 67.0 134 36.6
QL09p016348 Quercus lobata HOM05D000155 ORTHO05D000022 1.7e-09 66.6 132 29.5
Aqoxy6G02148 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 2.9e-09 65.9 119 36.1
EL10Ac6g13741 Beta vulgaris HOM05D008685 ORTHO05D000022 2.9e-09 65.9 138 36.2
FvH4_5g34302 Fragaria vesca HOM05D000650 ORTHO05D010020 2.9e-09 65.9 128 32.0
Aqoxy6G02062 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 3.8e-09 65.5 141 32.6
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 4.9e-09 65.1 134 30.6
Potri.005G152100 Populus trichocarpa HOM05D000650 ORTHO05D010020 6.4e-09 64.7 131 31.3
Sabra05G0119100 Salix brachista HOM05D000650 ORTHO05D010020 6.4e-09 64.7 131 31.3
Cpa.g.sc19.281 Carica papaya HOM05D000003 ORTHO05D000022 8.4e-09 64.3 133 36.1
Aqoxy7G00533 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 1.4e-08 63.5 96 33.3
MSTRG.28030 Avicennia marina HOM05D000155 ORTHO05D000022 1.4e-08 63.5 135 32.6
PSO339G5198 Papaver somniferum HOM05D000155 ORTHO05D000022 1.4e-08 63.5 132 28.8
Aqoxy1G02332 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 2.4e-08 62.8 125 33.6
MELO3C002549.2 Cucumis melo HOM05D000155 ORTHO05D000022 2.4e-08 62.8 137 33.6
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 3.2e-08 62.4 135 33.3
EL10Ac3g05611 Beta vulgaris HOM05D000003 ORTHO05D000022 3.2e-08 62.4 136 34.6
Haze_01707 Corylus avellana HOM05D000650 ORTHO05D010020 3.2e-08 62.4 128 31.2
Haze_10323 Corylus avellana HOM05D000650 ORTHO05D010020 3.2e-08 62.4 128 30.5
Lj1P688T36 Lonicera japonica HOM05D000155 ORTHO05D000022 3.2e-08 62.4 140 31.4
Nitab4.5_0000131g0020 Nicotiana tabacum HOM05D000650 ORTHO05D010020 3.2e-08 62.4 131 28.2
Lj1P685T53 Lonicera japonica HOM05D000155 ORTHO05D000022 4.2e-08 62.0 140 31.4
Nitab4.5_0000771g0040 Nicotiana tabacum HOM05D000650 ORTHO05D010020 4.2e-08 62.0 131 28.2
Nitab4.5_0002972g0040 Nicotiana tabacum HOM05D012456 ORTHO05D004636 4.2e-08 62.0 136 32.4
QL10p064615 Quercus lobata HOM05D000155 ORTHO05D000022 4.2e-08 62.0 132 28.8
Aqoxy4G01667 Aquilegia oxysepala HOM05D000003 ORTHO05D000022 5.4e-08 61.6 115 35.7
Cpa.g.sc21.40 Carica papaya HOM05D000650 ORTHO05D010020 7.1e-08 61.2 131 29.0
RcHm_v2.0_Chr2g0128961 Rosa chinensis HOM05D000003 ORTHO05D000022 7.1e-08 61.2 134 33.6
TAR199G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000004 7.1e-08 61.2 134 30.6
Dinv42596 Davidia involucrata HOM05D000650 ORTHO05D010020 9.3e-08 60.8 128 31.2
Lj1P687T17 Lonicera japonica HOM05D000155 ORTHO05D000022 9.3e-08 60.8 138 31.9
Nitab4.5_0009446g0020 Nicotiana tabacum HOM05D000650 ORTHO05D010020 9.3e-08 60.8 128 28.1
RcHm_v2.0_Chr7g0234881 Rosa chinensis HOM05D000650 ORTHO05D010020 9.3e-08 60.8 128 31.2
Sc05g0008160 Simmondsia chinensis HOM05D000155 ORTHO05D000022 9.3e-08 60.8 133 34.6
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.2e-07 60.5 132 34.1
AUR62043782 Chenopodium quinoa HOM05D008685 ORTHO05D000022 1.2e-07 60.5 134 33.6
Lj4A86T98 Lonicera japonica HOM05D000650 ORTHO05D010020 1.2e-07 60.5 128 29.7
QL04p008062 Quercus lobata HOM05D000009 ORTHO05D000008 1.2e-07 60.5 105 35.2
QL09p018396 Quercus lobata HOM05D000650 ORTHO05D010020 1.2e-07 60.5 131 31.3
SHI41116 Sapria himalayana HOM05D000024 ORTHO05D000007 1.2e-07 60.5 132 34.1
TWI56G0415 Tripterygium wilfordii HOM05D000650 ORTHO05D010020 1.2e-07 60.5 133 27.1
Cc02_g12270 Coffea canephora HOM05D000155 ORTHO05D000022 1.6e-07 60.1 135 32.6
FvH4_6g51131 Fragaria vesca HOM05D000155 ORTHO05D000022 1.6e-07 60.1 134 35.8
Prupe.1G535200 Prunus persica HOM05D000650 ORTHO05D010020 1.6e-07 60.1 128 30.5
AUR62024214 Chenopodium quinoa HOM05D008685 ORTHO05D000022 2.1e-07 59.7 134 33.6
CsaV3_1G011700 Cucumis sativus L. HOM05D000155 ORTHO05D000022 2.1e-07 59.7 137 34.3
Psat2g064560 Pisum sativum HOM05D000650 ORTHO05D010020 2.1e-07 59.7 136 30.1
MBI17_g20221_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.7e-07 59.3 143 32.2
PSO782G4499 Papaver somniferum HOM05D000155 ORTHO05D000022 2.7e-07 59.3 132 31.8
SHI15766 Sapria himalayana HOM05D004990 ORTHO05D000022 2.7e-07 59.3 139 32.4
SHI43080 Sapria himalayana HOM05D004990 ORTHO05D000022 2.7e-07 59.3 143 30.8
PGSC0003DMG400005085 Solanum tuberosum HOM05D000155 ORTHO05D000022 2.7e-07 59.3 136 32.4
Nitab4.5_0001115g0120 Nicotiana tabacum HOM05D012456 ORTHO05D000022 3.5e-07 58.9 136 32.4
PSO566G0030 Papaver somniferum HOM05D000155 ORTHO05D000022 4.6e-07 58.5 131 32.1
Atru.chr11.1243 Acer truncatum HOM05D000003 ORTHO05D000022 6.0e-07 58.2 133 30.1
AUR62016609 Chenopodium quinoa HOM05D000003 ORTHO05D000167 6.0e-07 58.2 130 33.1
MBI18_g23712_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.0e-07 58.2 134 32.8
SEGI_39148 Sequoiadendron giganteum HOM05D000352 ORTHO05D000260 6.0e-07 58.2 135 28.1
Aqoxy2G02139 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 7.9e-07 57.8 111 33.3
PSO591G0449 Papaver somniferum HOM05D000155 ORTHO05D000022 7.9e-07 57.8 136 29.4
Peaxi162Scf00041g00183 Petunia axillaris HOM05D000155 ORTHO05D000022 7.9e-07 57.8 134 34.3
QL02p058259 Quercus lobata HOM05D000155 ORTHO05D000022 7.9e-07 57.8 134 29.1
QL93p0100_0664 Quercus lobata HOM05D000155 ORTHO05D000022 7.9e-07 57.8 134 29.1
SEGI_05774 Sequoiadendron giganteum HOM05D000194 ORTHO05D000069 7.9e-07 57.8 134 32.8
A01p12730 Brassica napus HOM05D000155 ORTHO05D000022 1.0e-06 57.4 144 32.6
BraA01t01216Z Brassica rapa HOM05D000155 ORTHO05D000022 1.0e-06 57.4 144 32.6
CANSAT64G0029 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-06 57.4 135 29.6
COL.COLO4_06385 Corchorus olitorius HOM05D000395 ORTHO05D009449 1.0e-06 57.4 135 26.7
FvH4_3g23491 Fragaria vesca HOM05D000279 ORTHO05D000957 1.0e-06 57.4 135 31.1
Nitab4.5_0004734g0040 Nicotiana tabacum HOM05D000003 ORTHO05D000022 1.0e-06 57.4 139 32.4
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 1.0e-06 57.4 132 30.3
SHI31029 Sapria himalayana HOM05D004990 ORTHO05D000022 1.0e-06 57.4 136 33.1
SHI38779 Sapria himalayana HOM05D000155 ORTHO05D000022 1.0e-06 57.4 133 33.1
Aqoxy4G01321 Aquilegia oxysepala HOM05D000650 ORTHO05D000022 1.3e-06 57.0 131 29.8
CSS0032702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.3e-06 57.0 132 32.6
Lj3g0003452 Lotus japonicus HOM05D000003 ORTHO05D000004 1.3e-06 57.0 130 26.9
Nitab4.5_0008516g0020 Nicotiana tabacum HOM05D008306 ORTHO05D004636 1.3e-06 57.0 92 37.0
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 1.3e-06 57.0 134 31.3
RcHm_v2.0_Chr2g0133661 Rosa chinensis HOM05D000155 ORTHO05D000022 1.3e-06 57.0 137 33.6
Aqoxy5G02742 Aquilegia oxysepala HOM05D000650 ORTHO05D000022 1.7e-06 56.6 131 29.0
Aqoxy7G02241 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.7e-06 56.6 135 29.6
arahy.Tifrunner.gnm1.ann1.WYFF13 Arachis hypogaea HOM05D000155 ORTHO05D000022 1.7e-06 56.6 132 29.5
BcaC09g51229 Brassica carinata HOM05D000155 ORTHO05D000022 1.7e-06 56.6 144 31.9
C01p15320 Brassica napus HOM05D000155 ORTHO05D000022 1.7e-06 56.6 144 31.9
BolC1t01486H Brassica oleracea HOM05D000155 ORTHO05D000022 1.7e-06 56.6 144 31.9
AUR62038314 Chenopodium quinoa HOM05D008685 ORTHO05D000022 1.7e-06 56.6 134 32.8
Lsat_1_v5_gn_4_58600 Lactuca sativa HOM05D000774 ORTHO05D000602 1.7e-06 56.6 133 30.1
Nn3g19367 Nelumbo nucifera HOM05D000001 ORTHO05D012439 1.7e-06 56.6 108 35.2
Psat2g065480 Pisum sativum HOM05D000650 ORTHO05D010020 1.7e-06 56.6 133 30.8
Solyc04g076610.3 Solanum lycopersicum HOM05D000650 ORTHO05D010020 1.7e-06 56.6 128 27.3
Sopen00g012160 Solanum pennellii HOM05D000650 ORTHO05D010020 1.7e-06 56.6 128 27.3
CSS0036731 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.3e-06 56.2 132 31.8
AUR62010817 Chenopodium quinoa HOM05D008685 ORTHO05D000022 2.3e-06 56.2 130 30.0
Duzib213G0982 Durio zibethinus HOM05D008133 ORTHO05D007254 2.3e-06 56.2 131 28.2
MBI17_g31745_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.3e-06 56.2 137 34.3
Nitab4.5_0008416g0010 Nicotiana tabacum HOM05D000155 ORTHO05D000022 2.3e-06 56.2 133 30.8
Psat5g146080 Pisum sativum HOM05D000003 ORTHO05D000022 2.3e-06 56.2 132 28.8
PGSC0003DMG400009332 Solanum tuberosum HOM05D000650 ORTHO05D010020 2.3e-06 56.2 128 27.3
PGSC0003DMG400045895 Solanum tuberosum HOM05D000155 ORTHO05D000022 2.3e-06 56.2 132 31.1
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.3e-06 56.2 136 31.6
ClCG03G005440 Citrullus lanatus HOM05D000155 ORTHO05D000022 3.0e-06 55.8 141 31.9
COL.COLO4_20392 Corchorus olitorius HOM05D000003 ORTHO05D000167 3.0e-06 55.8 135 28.9
Peaxi162Scf00632g00037 Petunia axillaris HOM05D001426 ORTHO05D001389 3.0e-06 55.8 133 30.1
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 3.0e-06 55.8 135 26.7
RcHm_v2.0_Chr2g0132921 Rosa chinensis HOM05D000003 ORTHO05D000022 3.0e-06 55.8 130 31.5
Sed0011096 Sechium edule HOM05D000155 ORTHO05D000022 3.0e-06 55.8 137 31.4
AL7G32660 Arabidopsis lyrata HOM05D000155 ORTHO05D000022 3.9e-06 55.5 134 28.4
QL02p075356 Quercus lobata HOM05D000155 ORTHO05D000022 3.9e-06 55.5 107 29.0
SHI15763 Sapria himalayana HOM05D004990 ORTHO05D000022 3.9e-06 55.5 136 32.4
SHI36923 Sapria himalayana HOM05D004990 ORTHO05D000022 3.9e-06 55.5 136 32.4
vmacro21359 Vaccinium macrocarpon HOM05D000650 ORTHO05D010020 3.9e-06 55.5 128 29.7
Atru.chr10.544 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-06 55.1 135 34.1
Actinidia31833 Actinidia chinensis HOM05D000155 ORTHO05D000022 5.1e-06 55.1 98 37.8
CANSAT56G0158 Cannabis sativa HOM05D000003 ORTHO05D000004 5.1e-06 55.1 135 28.9
MBI07_g23924_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.1e-06 55.1 133 30.1
PSO170G3122 Papaver somniferum HOM05D003407 ORTHO05D001026 5.1e-06 55.1 137 26.3
QL06p048711 Quercus lobata HOM05D000027 ORTHO05D000066 5.1e-06 55.1 135 31.9
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 5.1e-06 55.1 133 36.1
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 5.1e-06 55.1 133 33.1
SEGI_21104 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 5.1e-06 55.1 131 32.1
SEGI_30262 Sequoiadendron giganteum HOM05D000399 ORTHO05D000022 5.1e-06 55.1 130 27.7
arahy.Tifrunner.gnm1.ann1.XP25HR Arachis hypogaea HOM05D000774 ORTHO05D000602 6.6e-06 54.7 141 31.9
Lj3g0007232 Lotus japonicus HOM05D000003 ORTHO05D000126 6.6e-06 54.7 132 30.3
RcHm_v2.0_Chr5g0000531 Rosa chinensis HOM05D000985 ORTHO05D011902 6.6e-06 54.7 132 29.5
RcHm_v2.0_Chr5g0040851 Rosa chinensis HOM05D000003 ORTHO05D000004 6.6e-06 54.7 136 30.9
Aqoxy3G02350 Aquilegia oxysepala HOM05D013112 ORTHO05D000006 8.7e-06 54.3 131 29.8
EL10Ac7g16709 Beta vulgaris HOM05D000003 ORTHO05D000004 8.7e-06 54.3 136 31.6
Cc00_g03270 Coffea canephora HOM05D000155 ORTHO05D000022 8.7e-06 54.3 137 32.1
Cc00_g05820 Coffea canephora HOM05D000155 ORTHO05D000022 8.7e-06 54.3 137 32.1
COL.COLO4_35274 Corchorus olitorius HOM05D000650 ORTHO05D010020 8.7e-06 54.3 131 28.2
ECA234G2338 Erigeron canadensis HOM05D000774 ORTHO05D000602 8.7e-06 54.3 133 30.1
MBI18_g13610_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.7e-06 54.3 133 31.6
RcHm_v2.0_Chr2g0127141 Rosa chinensis HOM05D000003 ORTHO05D000022 8.7e-06 54.3 131 32.1


User provided reference genes

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