Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1996.5 1010 100.0
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1436.4 1013 71.5
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1349.3 1011 66.2
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1343.2 1011 66.9
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1334.7 1013 67.2
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1331.2 1011 66.0
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1330.1 1011 67.2
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1327.4 1009 65.7
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1325.1 1014 66.2
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1323.9 988 67.3
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1323.1 1013 64.7
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1321.2 1017 64.8
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1320.1 1011 65.0
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1319.7 1001 66.0
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1315.8 1012 64.8
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1315.8 1011 64.5
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1315.1 1011 64.7
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1312.7 1076 63.0
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1306.6 1009 65.9
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1306.2 998 65.1
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1306.2 1011 64.8
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1304.7 987 65.9
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1304.3 1012 64.9
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1300.0 998 64.7
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1293.9 1016 65.1
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1292.7 1011 64.5
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1280.8 1015 64.5
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1273.8 1059 61.5
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1272.7 1006 63.9
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1269.2 1011 65.0
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1263.8 992 64.6
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1262.3 1012 63.3
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1242.6 1011 62.0
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1241.9 1011 61.1
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1241.1 1012 62.3
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1240.7 1021 61.9
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1237.6 1017 61.8
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1237.2 1030 60.7
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1236.5 1012 62.2
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1235.7 1017 62.0
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1234.6 1012 62.4
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1232.2 1013 61.4
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1228.8 1013 62.2
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1226.5 1012 60.6
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1223.8 1012 61.2
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1223.4 1012 60.3
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1223.4 1015 61.2
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1222.2 1012 60.9
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1220.7 1013 60.6
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1219.9 1013 60.9
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1218.0 1016 61.3
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1216.4 1075 58.7
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1213.0 1014 61.1
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1211.4 1013 60.3
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1205.3 1012 62.0
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1204.9 1013 61.1
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1203.7 1014 60.8
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1201.4 1014 60.5
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1197.6 1013 60.6
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1197.2 1010 60.0
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1197.2 1013 61.2
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1196.8 1007 61.3
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1195.6 1013 60.5
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1193.3 1010 59.8
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1192.9 1013 59.9
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1192.6 1013 60.7
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1187.6 1010 59.7
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1185.6 1013 59.8
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1181.8 1019 59.6
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1181.4 1013 60.4
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1181.0 1010 59.3
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1181.0 1010 59.3
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1179.9 1013 59.5
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1179.1 1017 60.0
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1169.5 1011 60.7
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1154.4 1012 58.7
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 0.0e+00 1154.0 796 73.7
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1153.7 1023 59.1
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1150.2 1012 57.8
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 0.0e+00 1115.5 1017 57.6
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1114.4 993 58.6
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1099.3 1013 56.2
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 0.0e+00 1096.3 1018 57.0
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 0.0e+00 1090.1 1015 56.1
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1078.5 782 69.9
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 1.6e-298 1029.6 782 67.9
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.6e-282 976.5 977 54.6
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 3.9e-273 945.3 683 68.7
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 2.3e-265 919.5 1028 49.7
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 8.7e-265 917.5 610 73.3
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 1.0e-260 904.0 593 74.4
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-260 903.7 1029 49.1
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.3e-236 823.9 991 46.8
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 4.0e-233 812.4 867 49.5
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.4e-230 803.9 1013 47.0
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 2.7e-229 799.7 752 54.9
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 2.5e-227 793.1 775 52.9
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 7.1e-198 695.3 504 66.5
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 1.3e-196 691.0 544 64.2
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 3.2e-190 669.8 1032 39.0
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 5.4e-182 642.5 1051 38.5
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 2.1e-181 640.6 453 70.6
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 1.7e-180 637.5 434 72.4
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 7.8e-173 612.1 547 58.1
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.9e-172 609.8 523 61.4
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 6.2e-170 602.4 572 55.8
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 8.4e-167 592.0 1026 36.7
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 3.9e-164 583.2 508 58.1
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 3.8e-151 540.0 423 65.5
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 5.1e-148 529.6 512 55.1
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 1.3e-138 498.4 463 55.9
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 6.7e-124 449.5 631 40.7
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 5.7e-115 419.9 1104 29.4
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 3.1e-113 414.1 538 44.4
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.7e-109 401.0 237 81.4
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 8.3e-106 389.4 299 68.9
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 6.1e-101 373.2 237 77.6
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.0e-99 368.2 419 48.4
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.0e-96 358.2 296 58.1
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.1e-77 295.0 317 48.6
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 8.9e-76 289.7 330 48.2
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.6e-75 288.1 314 49.0
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 1.0e-71 276.2 456 38.8
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 7.8e-64 250.0 392 42.1
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 2.4e-60 238.4 419 36.8
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 4.0e-60 237.7 419 36.8
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 9.3e-49 199.9 111 85.6
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 6.0e-48 197.2 163 64.4
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 6.0e-48 197.2 163 64.4
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-46 192.6 398 37.7
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 4.8e-45 187.6 394 36.8
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 1.4e-44 186.0 751 25.3
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 4.5e-43 181.0 228 45.6
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 7.9e-40 170.2 312 38.5
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 2.5e-38 165.2 417 30.9
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 3.3e-38 164.9 802 24.3
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 3.4e-35 154.8 752 23.1
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 6.1e-32 144.1 163 47.9
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 3.3e-30 138.3 116 64.7
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 2.0e-27 129.0 122 60.7
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 5.9e-27 127.5 76 84.2
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 2.2e-26 125.6 190 37.9
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 2.0e-22 112.5 76 72.4
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 9.7e-22 110.2 195 37.4
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 4.8e-21 107.8 154 40.3
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 1.1e-20 106.7 89 57.3
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 5.0e-18 97.8 60 80.0
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 2.1e-16 92.4 161 35.4
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 2.1e-16 92.4 453 26.0
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 1.8e-12 79.3 51 68.6
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 3.5e-11 75.1 63 61.9
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 1.3e-10 73.2 46 73.9
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.3e-10 73.2 49 65.3
PSO782G3231 Papaver somniferum HOM05D023650 ORTHO05D026023 1.5e-09 69.7 75 44.0
Ah.01g020990 Amaranthus hybridus HOM05D002927 ORTHO05D003841 4.0e-07 61.6 286 25.2
TPR.G24164 Trifolium pratense HOM05D002927 ORTHO05D003841 4.0e-07 61.6 283 26.9
BcaB05g25270 Brassica carinata HOM05D002927 ORTHO05D003841 5.2e-07 61.2 304 25.3
C06p54110 Brassica napus HOM05D002927 ORTHO05D003841 1.1e-06 60.1 288 24.3
BolC6t40424H Brassica oleracea HOM05D002927 ORTHO05D003841 1.1e-06 60.1 288 24.3
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 2.0e-06 59.3 69 47.8
TAR624G0871 Trochodendron aralioides HOM05D002927 ORTHO05D003841 4.4e-06 58.2 301 25.2
CDE07G0468 Ceratophyllum demersum HOM05D002927 ORTHO05D003841 5.7e-06 57.8 269 25.3
CBR_g51323 Chara braunii HOM05D002927 ORTHO05D003841 7.5e-06 57.4 275 24.4


User provided reference genes

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