Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1986.1 990 100.0
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1738.8 984 87.1
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1714.1 989 85.9
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1706.4 989 85.3
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1687.9 986 84.3
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1678.7 991 83.9
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1677.5 991 83.2
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1674.4 986 83.7
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1671.4 989 83.0
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1669.4 988 83.4
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1668.7 985 82.8
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1667.5 998 82.3
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1665.2 988 83.3
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1664.0 991 83.2
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1661.4 987 82.8
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1659.4 991 82.6
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1656.7 991 82.6
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1652.1 991 82.6
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1652.1 986 81.8
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1649.0 992 82.3
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1648.6 991 82.6
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1648.6 986 81.9
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1646.3 986 81.9
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1644.8 991 82.6
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1641.3 986 81.8
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1641.3 991 82.0
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1640.6 997 81.3
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1637.9 992 81.9
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1637.5 991 80.9
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1632.8 990 81.6
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1632.5 1011 79.8
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1632.5 1015 80.6
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1632.5 991 81.4
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1632.1 1015 80.5
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1630.2 991 80.5
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1628.6 991 81.1
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1627.5 986 80.8
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1627.1 975 82.1
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1623.2 1031 79.0
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1621.7 987 80.7
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1620.9 986 80.6
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1616.3 1015 79.8
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1615.9 993 80.9
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1614.0 975 81.3
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1611.3 986 80.1
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1610.9 997 80.0
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1610.1 988 79.9
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1606.3 989 79.7
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1605.1 987 80.1
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1604.7 990 78.8
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1604.7 985 78.5
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1600.1 1002 78.7
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1600.1 938 84.2
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1598.6 993 79.0
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1598.6 991 78.8
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1597.4 1073 74.9
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1593.9 993 78.9
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1593.6 989 79.3
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1592.0 1081 74.3
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1591.6 980 79.2
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1589.3 992 78.2
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1588.5 1003 77.9
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1585.5 974 80.0
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1585.1 993 78.5
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1584.7 991 78.0
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1582.8 990 78.0
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1582.8 991 78.0
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1581.6 991 79.6
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1580.1 991 78.1
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1579.3 1006 77.1
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1577.8 991 79.2
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1574.3 996 77.9
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1569.7 1006 76.9
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1565.8 1008 76.8
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1565.4 980 78.9
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1558.5 991 79.2
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1555.8 933 81.2
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1553.5 991 78.5
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1549.6 990 76.9
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1546.2 985 76.8
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1545.4 980 78.1
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1537.3 985 76.9
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1530.8 1029 75.3
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1528.8 1040 73.4
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1510.0 1019 74.9
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1503.4 982 75.4
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1488.4 930 80.3
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1475.3 991 75.0
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1460.7 991 73.5
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1454.9 891 79.9
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1445.3 968 74.5
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1425.2 993 71.4
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1424.5 855 81.8
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1387.5 818 84.6
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1354.3 790 85.4
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1345.5 794 84.6
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1334.3 953 71.6
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1318.9 857 76.9
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1318.1 781 82.3
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1312.4 994 69.0
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1295.0 773 83.6
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1287.3 793 79.9
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1280.8 763 83.6
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1245.3 764 81.3
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1189.1 995 59.7
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1181.8 982 60.0
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1164.4 783 75.6
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1145.6 762 77.2
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 5.5e-304 1047.7 977 53.5
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 2.6e-290 1002.3 790 61.9
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 3.6e-287 991.9 556 89.0
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 1.4e-286 989.9 678 74.2
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 9.7e-285 983.8 647 75.7
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.8e-283 979.5 608 79.1
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.4e-246 857.1 571 74.8
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 5.4e-243 845.1 520 79.2
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 2.1e-242 843.2 518 82.0
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 7.3e-240 834.7 608 67.4
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 2.7e-194 683.3 418 77.3
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 9.7e-168 595.1 336 84.2
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 4.9e-151 539.7 338 79.9
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.3e-143 515.0 282 89.0
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 2.7e-125 454.1 1082 31.0
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 3.2e-118 430.6 249 85.5
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 3.5e-109 400.6 1022 28.8
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 1.4e-105 388.7 226 78.8
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 2.9e-103 380.9 1265 26.7
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 2.3e-100 371.3 228 75.4
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 8.4e-95 352.8 268 69.4
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 8.7e-92 342.8 205 80.5
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 4.8e-90 337.0 236 68.6
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 8.4e-87 326.2 225 70.7
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 7.6e-80 303.1 178 78.7
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 1.1e-78 299.3 283 55.8
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 3.3e-75 287.7 189 74.1
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.4e-72 277.7 205 69.8
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 1.4e-70 272.3 441 38.3
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 3.4e-64 251.1 147 76.2
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 1.3e-55 222.6 147 68.7
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 4.7e-53 214.2 123 76.4
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 1.1e-49 203.0 141 73.0
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 8.3e-42 176.8 163 59.5
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 2.4e-41 175.3 122 71.3
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.7e-37 161.0 134 60.4
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 6.1e-37 160.6 106 72.6
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.0e-36 158.3 94 81.9
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.5e-35 153.7 189 50.8
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 2.7e-32 145.2 88 78.4
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.1e-30 139.8 73 95.9
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 4.4e-27 127.9 131 58.8
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 7.5e-27 127.1 127 59.1
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.1e-25 121.3 81 65.4
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 1.2e-24 119.8 76 75.0
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 3.5e-24 118.2 75 78.7
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 2.5e-22 112.1 101 58.4
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.5e-22 112.1 92 65.2
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.6e-22 110.9 91 65.9
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 9.5e-22 110.2 80 78.8
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.7e-15 89.4 105 43.8
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.9e-15 88.2 54 75.9
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 1.5e-14 86.3 88 52.3
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 1.6e-13 82.8 51 70.6
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 2.8e-13 82.0 227 25.1
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 1.4e-12 79.7 100 45.0
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.2e-11 76.6 54 57.4
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 1.5e-11 76.3 160 34.4
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 6.0e-08 64.3 47 70.2
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 1.1e-06 60.1 50 58.0


User provided reference genes

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