Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G00816 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 3.1e-81 305.1 152 100.0
Aqoxy2G03346 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 4.0e-36 155.2 95 78.9
Aqoxy1G00817 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 7.5e-35 151.0 95 76.8
Dinv44973 Davidia involucrata HOM05D002450 ORTHO05D002953 1.5e-22 110.2 99 55.6
Actinidia10186 Actinidia chinensis HOM05D002450 ORTHO05D002953 1.9e-22 109.8 131 45.0
Nn5g30523 Nelumbo nucifera HOM05D002450 ORTHO05D002953 3.2e-22 109.0 99 57.6
FAN13G2461 Fragaria x ananassa HOM05D002450 ORTHO05D002953 5.5e-22 108.2 96 54.2
Actinidia22682 Actinidia chinensis HOM05D002450 ORTHO05D002953 9.5e-22 107.5 149 41.6
FAN08G0311 Fragaria x ananassa HOM05D002450 ORTHO05D002953 1.6e-21 106.7 96 53.1
FvH4_5g25820 Fragaria vesca HOM05D002450 ORTHO05D002953 2.1e-21 106.3 96 53.1
FAN04G2208 Fragaria x ananassa HOM05D002450 ORTHO05D002953 2.1e-21 106.3 96 53.1
Nn1g04614 Nelumbo nucifera HOM05D002450 ORTHO05D002953 2.1e-21 106.3 95 54.7
RcHm_v2.0_Chr7g0216291 Rosa chinensis HOM05D002450 ORTHO05D002953 2.1e-21 106.3 96 54.2
FAN18G3361 Fragaria x ananassa HOM05D002450 ORTHO05D002953 2.8e-21 105.9 96 53.1
Ciclev10000177m.g Citrus clementina HOM05D002450 ORTHO05D002953 3.6e-21 105.5 131 46.6
Dinv39244 Davidia involucrata HOM05D002450 ORTHO05D002953 3.6e-21 105.5 95 53.7
PGR031G3734 Punica granatum HOM05D002450 ORTHO05D002953 3.6e-21 105.5 113 50.4
GSVIVG01009365001 Vitis vinifera HOM05D002450 ORTHO05D002953 3.6e-21 105.5 121 45.5
PSO541G0144 Papaver somniferum HOM05D002450 ORTHO05D002953 4.7e-21 105.1 107 50.5
Duzib093G1995 Durio zibethinus HOM05D002450 ORTHO05D002953 1.4e-20 103.6 112 49.1
Gohir.A01G121000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 1.8e-20 103.2 108 50.9
Gohir.D01G108500 Gossypium hirsutum HOM05D002450 ORTHO05D002953 1.8e-20 103.2 108 50.9
Gorai.002G132700 Gossypium raimondii HOM05D002450 ORTHO05D002953 1.8e-20 103.2 108 50.9
Gohir.D05G265200 Gossypium hirsutum HOM05D002450 ORTHO05D002953 2.3e-20 102.8 124 46.8
Thecc.08G091300 Theobroma cacao HOM05D002450 ORTHO05D002953 2.3e-20 102.8 108 50.9
CSS0019848 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 4.0e-20 102.1 119 45.4
TAR381G1265 Trochodendron aralioides HOM05D002450 ORTHO05D002953 4.0e-20 102.1 105 50.5
Gohir.A05G263000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 5.2e-20 101.7 124 46.0
Gorai.009G277000 Gossypium raimondii HOM05D002450 ORTHO05D002953 6.8e-20 101.3 124 46.0
COL.COLO4_28529 Corchorus olitorius HOM05D002450 ORTHO05D002953 1.5e-19 100.1 108 49.1
TAR625G0542 Trochodendron aralioides HOM05D002450 ORTHO05D002953 1.5e-19 100.1 135 40.7
Sed0017090 Sechium edule HOM05D002450 ORTHO05D002953 2.0e-19 99.8 94 53.2
ClCG09G012130 Citrullus lanatus HOM05D002450 ORTHO05D002953 2.6e-19 99.4 94 51.1
Duzib041G0010 Durio zibethinus HOM05D002450 ORTHO05D002953 2.6e-19 99.4 94 54.3
Eucgr.C02521 Eucalyptus grandis HOM05D002450 ORTHO05D002953 4.4e-19 98.6 94 55.3
Prupe.5G007400 Prunus persica HOM05D002450 ORTHO05D002953 4.4e-19 98.6 95 51.6
Cpa.g.sc123.17 Carica papaya HOM05D002450 ORTHO05D002953 7.5e-19 97.8 99 48.5
CiPaw.07G177000 Carya illinoinensis HOM05D002450 ORTHO05D002953 1.3e-18 97.1 110 45.5
Cc10_g05590 Coffea canephora HOM05D002450 ORTHO05D002953 1.3e-18 97.1 100 52.0
MELO3C003391.2 Cucumis melo HOM05D002450 ORTHO05D002953 1.3e-18 97.1 94 50.0
CsaV3_3G049350 Cucumis sativus L. HOM05D002450 ORTHO05D002953 1.3e-18 97.1 94 50.0
MD06G1005900 Malus domestica HOM05D002450 ORTHO05D002953 1.3e-18 97.1 95 49.5
PSO675G5640 Papaver somniferum HOM05D002450 ORTHO05D002953 4.9e-18 95.1 107 46.7
Sed0009786 Sechium edule HOM05D002450 ORTHO05D002953 6.3e-18 94.7 94 50.0
Sc24g0003290 Simmondsia chinensis HOM05D002450 ORTHO05D002953 8.3e-18 94.4 95 49.5
A06p48030 Brassica napus HOM05D002450 ORTHO05D002953 1.4e-17 93.6 136 40.4
BraA06t27673Z Brassica rapa HOM05D002450 ORTHO05D002953 1.4e-17 93.6 136 40.4
Haze_26082 Corylus avellana HOM05D002450 ORTHO05D002953 2.4e-17 92.8 110 45.5
Carub.0008s0559 Capsella rubella HOM05D002450 ORTHO05D002953 3.1e-17 92.4 130 41.5
Hund26558 Selenicereus undatus HOM05D002450 ORTHO05D002953 4.1e-17 92.0 105 46.7
BcaC06g34680 Brassica carinata HOM05D002450 ORTHO05D002953 7.0e-17 91.3 137 40.1
Sc05g0001410 Simmondsia chinensis HOM05D002450 ORTHO05D002953 7.0e-17 91.3 94 48.9
Cfa003416 Carpinus fangiana HOM05D002450 ORTHO05D002953 1.2e-16 90.5 110 43.6
MSTRG.24365 Avicennia marina HOM05D002450 ORTHO05D002953 1.6e-16 90.1 65 64.6
CANSAT54G1944 Cannabis sativa HOM05D002450 ORTHO05D002953 1.6e-16 90.1 146 39.0
Nitab4.5_0000934g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 1.6e-16 90.1 99 46.5
Atru.chr9.2194 Acer truncatum HOM05D002450 ORTHO05D002953 2.0e-16 89.7 98 46.9
A02p27680 Brassica napus HOM05D002450 ORTHO05D002953 2.0e-16 89.7 141 38.3
Migut.N02766 Erythranthe guttata HOM05D002450 ORTHO05D002953 2.0e-16 89.7 65 64.6
Glyma.06G045200 Glycine max HOM05D002450 ORTHO05D002953 2.0e-16 89.7 95 47.4
Peaxi162Scf00081g01329 Petunia axillaris HOM05D002450 ORTHO05D002953 2.0e-16 89.7 97 50.5
Phvul.001G026300 Phaseolus vulgaris HOM05D002450 ORTHO05D002953 2.0e-16 89.7 95 47.4
QL12p037610 Quercus lobata HOM05D002450 ORTHO05D002953 2.0e-16 89.7 99 45.5
Sp2g07910 Schrenkiella parvula HOM05D002450 ORTHO05D002953 2.0e-16 89.7 96 51.0
C07p25690 Brassica napus HOM05D002450 ORTHO05D002953 2.7e-16 89.4 137 39.4
BolC7t43088H Brassica oleracea HOM05D002450 ORTHO05D002953 2.7e-16 89.4 137 39.4
Lj4C69T6 Lonicera japonica HOM05D002450 ORTHO05D002953 2.7e-16 89.4 98 48.0
Lj1g0026999 Lotus japonicus HOM05D002450 ORTHO05D002953 2.7e-16 89.4 95 47.4
VMungo0647G0877 Vigna mungo HOM05D002450 ORTHO05D002953 2.7e-16 89.4 96 46.9
DCAR_008851 Daucus carota HOM05D002450 ORTHO05D002953 3.5e-16 89.0 109 44.0
BraA02t07807Z Brassica rapa HOM05D002450 ORTHO05D002953 4.5e-16 88.6 96 49.0
CARHR180850 Cardamine hirsuta HOM05D002450 ORTHO05D002953 4.5e-16 88.6 131 40.5
Glyma.04G044700 Glycine max HOM05D002450 ORTHO05D002953 4.5e-16 88.6 90 50.0
BcaC03g16563 Brassica carinata HOM05D002450 ORTHO05D002953 7.8e-16 87.8 139 38.1
C02p43760 Brassica napus HOM05D002450 ORTHO05D002953 7.8e-16 87.8 139 38.1
Thhalv10003149m.g Eutrema salsugineum HOM05D002450 ORTHO05D002953 7.8e-16 87.8 137 38.0
Glyma.14G087700 Glycine max HOM05D002450 ORTHO05D002953 7.8e-16 87.8 97 47.4
Glyma.17G236600 Glycine max HOM05D002450 ORTHO05D002953 7.8e-16 87.8 97 47.4
AT5G43130 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 1.0e-15 87.4 136 39.0
arahy.Tifrunner.gnm1.ann1.27GD0X Arachis hypogaea HOM05D002450 ORTHO05D002953 1.3e-15 87.0 90 47.8
BolC2t10422H Brassica oleracea HOM05D002450 ORTHO05D002953 1.3e-15 87.0 97 48.5
AL8G17530 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 1.7e-15 86.7 136 39.0
CAN.G1054.28 Capsicum annuum HOM05D002450 ORTHO05D002953 1.7e-15 86.7 99 45.5
Ca_25258_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 1.7e-15 86.7 102 45.1
Nitab4.5_0003228g0010 Nicotiana tabacum HOM05D002450 ORTHO05D002953 1.7e-15 86.7 100 47.0
Eucgr.F02266 Eucalyptus grandis HOM05D002450 ORTHO05D002953 2.3e-15 86.3 110 44.5
Lj5g0004805 Lotus japonicus HOM05D002450 ORTHO05D002953 2.3e-15 86.3 95 45.3
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 2.3e-15 86.3 95 46.3
Oeu057366.3 Olea europaea HOM05D002450 ORTHO05D002953 2.9e-15 85.9 96 46.9
AUR62011845 Chenopodium quinoa HOM05D002450 ORTHO05D002953 3.8e-15 85.5 98 44.9
Ca_15910_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 3.8e-15 85.5 95 46.3
Psat5g038160 Pisum sativum HOM05D002450 ORTHO05D002953 3.8e-15 85.5 95 46.3
EL10Ac2g04298 Beta vulgaris HOM05D002450 ORTHO05D002953 5.0e-15 85.1 101 43.6
DCAR_012809 Daucus carota HOM05D002450 ORTHO05D002953 5.0e-15 85.1 99 45.5
Manes.16G088600 Manihot esculenta HOM05D002450 ORTHO05D002953 5.0e-15 85.1 128 39.1
Nitab4.5_0000197g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 5.0e-15 85.1 96 46.9
Lalb_Chr24g0399411 Lupinus albus HOM05D002450 ORTHO05D002953 6.6e-15 84.7 94 44.7
TPR.G2904 Trifolium pratense HOM05D002450 ORTHO05D002953 6.6e-15 84.7 94 45.7
Rhsim07G0221700 Rhododendron simsii HOM05D002450 ORTHO05D002953 8.6e-15 84.3 92 46.7
Solyc04g078050.3 Solanum lycopersicum HOM05D002450 ORTHO05D002953 1.1e-14 84.0 107 43.9
Sopen04g031640 Solanum pennellii HOM05D002450 ORTHO05D002953 1.1e-14 84.0 107 43.9
PGSC0003DMG401021510 Solanum tuberosum HOM05D002450 ORTHO05D002953 1.1e-14 84.0 107 43.9
Lalb_Chr14g0368301 Lupinus albus HOM05D002450 ORTHO05D002953 1.5e-14 83.6 94 42.6
TPR.G35644 Trifolium pratense HOM05D002450 ORTHO05D002953 1.9e-14 83.2 95 43.2
Potri.002G119900 Populus trichocarpa HOM05D002450 ORTHO05D002953 2.5e-14 82.8 115 42.6
BcaC06g31721 Brassica carinata HOM05D002450 ORTHO05D002953 3.3e-14 82.4 145 37.9
THA.LOC104812586 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 3.3e-14 82.4 93 47.3
vmacro22069 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 3.3e-14 82.4 96 42.7
vmacro22793 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 3.3e-14 82.4 96 42.7
Ah.02g112100 Amaranthus hybridus HOM05D002450 ORTHO05D002953 4.3e-14 82.0 95 43.2
Lsat_1_v5_gn_4_130920 Lactuca sativa HOM05D002450 ORTHO05D002953 7.3e-14 81.3 99 44.4
BcaB07g30594 Brassica carinata HOM05D002450 ORTHO05D002953 9.5e-14 80.9 111 40.5
Potri.014G018000 Populus trichocarpa HOM05D002450 ORTHO05D002953 1.2e-13 80.5 127 38.6
arahy.Tifrunner.gnm1.ann1.Z5BLZE Arachis hypogaea HOM05D002450 ORTHO05D002953 1.6e-13 80.1 90 44.4
ECA232G4701 Erigeron canadensis HOM05D002450 ORTHO05D002953 1.6e-13 80.1 96 45.8
Manes.03G054700 Manihot esculenta HOM05D002450 ORTHO05D002953 1.6e-13 80.1 118 39.8
Rhsim06G0060700 Rhododendron simsii HOM05D002450 ORTHO05D002953 1.6e-13 80.1 88 44.3
SGA_v2.0_scaffold14G06941 Striga asiatica HOM05D002450 ORTHO05D002953 1.6e-13 80.1 92 47.8
Atru.chr13.809 Acer truncatum HOM05D002450 ORTHO05D002953 4.7e-13 78.6 82 48.8
Sabra14G0011900 Salix brachista HOM05D002450 ORTHO05D002953 6.1e-13 78.2 88 45.5
HPP92_026568 Vanilla planifolia HOM05D002450 ORTHO05D002953 6.1e-13 78.2 57 59.6
Os02g0654400 Oryza sativa ssp. japonica HOM05D002450 ORTHO05D002953 1.4e-12 77.0 57 57.9
Zm00001eb123340 Zea mays HOM05D002450 ORTHO05D002953 2.3e-12 76.3 88 43.2
PGR031G1138 Punica granatum HOM05D002450 ORTHO05D002953 4.0e-12 75.5 102 44.1
Prupe.6G138300 Prunus persica HOM05D002450 ORTHO05D002953 5.2e-12 75.1 88 39.8
HanXRQChr06g0184031 Helianthus annuus HOM05D002450 ORTHO05D002953 8.9e-12 74.3 62 56.5
TWI77G0253 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 8.9e-12 74.3 98 40.8
RcHm_v2.0_Chr1g0327781 Rosa chinensis HOM05D002450 ORTHO05D002953 4.4e-11 72.0 91 41.8
CDE07G0359 Ceratophyllum demersum HOM05D002450 ORTHO05D002953 1.3e-10 70.5 100 38.0
HanXRQChr17g0568431 Helianthus annuus HOM05D002450 ORTHO05D002953 1.7e-10 70.1 95 41.1
Zm00001eb123350 Zea mays HOM05D002450 ORTHO05D002953 1.7e-10 70.1 57 54.4
Os03g0441000 Oryza sativa ssp. japonica HOM05D002450 ORTHO05D002953 3.7e-10 68.9 108 35.2
Ah.11g049460 Amaranthus hybridus HOM05D002450 ORTHO05D002953 4.9e-10 68.6 95 38.9
Medtr3g102910 Medicago truncatula HOM05D002450 ORTHO05D002953 6.4e-10 68.2 83 43.4
ECA232G4759 Erigeron canadensis HOM05D002450 ORTHO05D002953 1.1e-09 67.4 123 33.3
TWI74G0610 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 1.4e-09 67.0 91 36.3
ATR0665G484 Amborella trichopoda HOM05D002450 ORTHO05D002953 1.8e-09 66.6 142 31.7
BolC7t42261H Brassica oleracea HOM05D002450 ORTHO05D002953 2.4e-09 66.2 99 40.4
HanXRQChr17g0568571 Helianthus annuus HOM05D002450 ORTHO05D002953 3.2e-09 65.9 81 40.7
BcaC06g35313 Brassica carinata HOM05D002450 ORTHO05D002953 5.4e-09 65.1 134 33.6
C07p17530 Brassica napus HOM05D002450 ORTHO05D002953 7.0e-09 64.7 134 33.6
Aa31LG9G13220 Aethionema arabicum HOM05D002450 ORTHO05D002953 9.2e-09 64.3 131 32.1
HanXRQChr09g0266561 Helianthus annuus HOM05D002450 ORTHO05D002953 9.2e-09 64.3 110 34.5
A07p11620 Brassica napus HOM05D002450 ORTHO05D002953 2.0e-08 63.2 95 36.8
BraA07t28949Z Brassica rapa HOM05D002450 ORTHO05D002953 4.6e-08 62.0 94 37.2
THA.LOC104804740 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 1.0e-07 60.8 92 39.1
THA.LOC104814186 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 1.0e-07 60.8 92 39.1
BcaB03g13972 Brassica carinata HOM05D002450 ORTHO05D002953 1.7e-07 60.1 139 33.1
HanXRQChr17g0568081 Helianthus annuus HOM05D002450 ORTHO05D002953 1.7e-07 60.1 103 32.0
HanXRQChr17g0568561 Helianthus annuus HOM05D002450 ORTHO05D002953 1.7e-07 60.1 103 32.0
Aqoxy4G02607 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 5.0e-07 58.5 97 34.0
Zm00001eb020720 Zea mays HOM05D002450 ORTHO05D002953 5.0e-07 58.5 61 41.0
AagrBONN_evm.TU.Sc2ySwM_228.2387 Anthoceros agrestis HOM05D002450 ORTHO05D002953 1.1e-06 57.4 98 27.6
AagrBONN_evm.TU.Sc2ySwM_228.4806 Anthoceros agrestis HOM05D002450 ORTHO05D002953 1.9e-06 56.6 101 34.7


User provided reference genes

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