Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 3.7e-126 454.9 233 100.0
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 3.6e-89 332.0 248 72.6
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 6.2e-89 331.3 187 90.4
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 6.2e-89 331.3 187 90.4
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 4.0e-88 328.6 189 88.4
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 3.4e-87 325.5 186 87.6
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 5.8e-87 324.7 200 84.0
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 1.1e-85 320.5 186 87.6
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.4e-85 320.1 186 86.0
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 1.4e-85 320.1 186 87.6
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 1.4e-85 320.1 186 87.6
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 1.4e-85 320.1 186 87.6
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 1.9e-85 319.7 183 86.9
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 2.4e-85 319.3 190 85.3
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 2.4e-85 319.3 202 81.7
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 2.4e-85 319.3 202 81.7
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 2.4e-85 319.3 202 81.7
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 3.2e-85 318.9 186 86.6
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 3.2e-85 318.9 186 86.6
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 3.2e-85 318.9 186 86.6
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 4.1e-85 318.5 186 86.0
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 4.1e-85 318.5 186 86.0
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 4.1e-85 318.5 186 86.0
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 4.1e-85 318.5 184 86.4
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 9.2e-85 317.4 188 86.7
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 2.7e-84 315.8 186 86.0
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 1.0e-83 313.9 186 86.0
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 1.0e-83 313.9 186 86.0
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 1.3e-83 313.5 206 80.1
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 3.9e-83 312.0 227 74.0
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 3.9e-83 312.0 227 74.0
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 1.9e-82 309.7 184 84.8
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 2.5e-82 309.3 179 86.6
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 5.6e-82 308.1 186 84.4
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 5.6e-82 308.1 186 84.4
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 4.0e-80 302.0 200 79.5
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 6.8e-80 301.2 183 84.2
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 2.6e-79 299.3 186 81.7
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 7.6e-79 297.7 187 82.9
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 7.6e-79 297.7 187 82.9
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 7.6e-79 297.7 187 82.9
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 7.6e-79 297.7 187 82.9
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 5.4e-77 291.6 183 81.4
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 9.2e-77 290.8 192 80.2
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 1.2e-76 290.4 188 79.8
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 1.2e-76 290.4 188 79.8
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 1.2e-76 290.4 188 80.9
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 3.5e-76 288.9 188 79.8
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 3.5e-76 288.9 188 79.8
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 3.1e-72 275.8 191 77.0
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 8.9e-72 274.2 202 72.3
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 8.9e-72 274.2 193 76.2
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 1.1e-69 267.3 181 77.3
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 2.4e-69 266.2 159 85.5
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 2.1e-68 263.1 173 80.3
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 1.0e-67 260.8 173 80.9
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.7e-67 260.0 173 79.8
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 1.9e-66 256.5 187 75.4
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 4.3e-66 255.4 187 72.7
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 1.3e-65 253.8 159 81.8
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 6.2e-65 251.5 159 81.8
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.1e-64 250.8 153 83.0
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 1.8e-64 250.0 167 79.0
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 7.6e-63 244.6 156 82.7
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.9e-61 240.0 189 69.3
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 4.8e-57 225.3 147 79.6
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 2.6e-55 219.5 167 73.7
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 2.6e-55 219.5 237 52.3
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.9e-51 205.7 134 74.6
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 2.2e-46 189.9 150 69.3
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 2.5e-45 186.4 129 78.3
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 1.6e-44 183.7 203 55.7
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 4.6e-44 182.2 185 57.3
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 7.9e-44 181.4 178 57.9
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 2.5e-42 176.4 185 55.7
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.5e-42 176.4 185 55.7
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 7.4e-42 174.9 185 55.1
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 7.4e-42 174.9 185 55.1
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 7.4e-42 174.9 115 79.1
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 2.8e-41 172.9 110 79.1
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 6.3e-41 171.8 133 73.7
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.0e-35 154.5 109 74.3
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 5.1e-35 152.1 109 73.4
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 6.9e-32 141.7 173 51.4
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 9.1e-32 141.4 85 81.2
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 1.5e-31 140.6 95 73.7
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 3.4e-31 139.4 72 91.7
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 4.5e-31 139.0 84 81.0
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 4.2e-29 132.5 68 91.2
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 4.2e-29 132.5 68 91.2
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 5.5e-29 132.1 72 87.5
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 9.4e-29 131.3 74 86.5
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.6e-28 130.6 109 67.9
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 6.1e-28 128.6 77 83.1
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 7.9e-28 128.3 108 64.8
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 7.9e-28 128.3 84 77.4
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 5.1e-27 125.6 108 63.9
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 6.7e-27 125.2 74 79.7
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.2e-23 114.4 70 77.1
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 1.7e-22 110.5 107 60.7
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.8e-22 109.4 74 71.6
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.8e-22 109.4 69 75.4
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 3.2e-21 106.3 177 35.0
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 7.2e-21 105.1 61 82.0
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.2e-20 104.4 69 69.6
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.4e-19 100.9 66 71.2
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 3.0e-19 99.8 71 70.4
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 1.1e-18 97.8 66 74.2
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.0e-18 97.1 66 65.2
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 7.4e-18 95.1 55 78.2
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 7.7e-15 85.1 49 77.6
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 1.0e-11 74.7 47 72.3
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.0e-11 73.2 71 53.5
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 5.2e-11 72.4 53 66.0
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 3.3e-10 69.7 77 55.8
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 9.7e-10 68.2 52 65.4
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.3e-09 67.8 45 71.1
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 4.8e-09 65.9 41 75.6
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 1.1e-08 64.7 62 58.1
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 1.8e-08 63.9 102 48.0
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 9.1e-08 61.6 34 82.4
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 1.2e-07 61.2 36 72.2
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 3.5e-07 59.7 42 73.8
Psat1g132440 Pisum sativum HOM05D002864 ORTHO05D007972 5.9e-07 58.9 51 64.7
MELO3C031088.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.7e-06 57.4 40 62.5


User provided reference genes

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