Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 7.0e-209 730.3 355 100.0
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 1.2e-200 703.0 354 97.5
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 4.5e-200 701.0 354 97.2
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 2.5e-198 695.3 355 96.6
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 4.2e-198 694.5 355 96.6
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 4.2e-198 694.5 355 96.6
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 4.2e-198 694.5 355 96.6
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 9.4e-198 693.3 355 95.8
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.4e-196 689.5 355 95.8
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.4e-196 689.5 355 95.8
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-196 689.5 355 95.8
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-196 689.5 355 95.8
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-196 689.5 355 95.8
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.4e-196 689.5 355 95.8
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.8e-196 689.1 355 95.8
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 4.8e-194 681.0 355 95.2
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 4.8e-194 681.0 355 95.2
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.1e-193 679.9 352 95.2
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.1e-193 679.9 355 94.9
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 5.9e-192 674.1 355 94.4
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 8.5e-191 670.2 355 93.8
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 8.5e-191 670.2 355 93.8
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 8.5e-191 670.2 355 93.8
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 8.5e-191 670.2 355 93.8
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 8.5e-191 670.2 355 93.8
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 8.5e-191 670.2 355 93.8
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 3.2e-190 668.3 355 93.5
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 3.6e-189 664.8 351 94.0
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 6.1e-189 664.1 351 93.7
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.4e-188 662.9 351 93.2
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 5.2e-188 661.0 356 92.7
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 1.7e-186 656.0 354 91.8
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.4e-185 652.9 352 91.2
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 2.0e-184 649.0 355 92.1
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.0e-183 646.7 340 93.8
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 3.0e-180 635.2 318 97.5
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 2.3e-175 619.0 355 88.5
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 4.0e-172 608.2 355 87.3
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 4.0e-172 608.2 355 87.3
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 1.5e-171 606.3 354 86.7
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 6.4e-170 600.9 356 86.0
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 7.8e-168 594.0 355 85.9
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 1.1e-166 590.1 354 85.3
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.0e-159 565.5 355 81.4
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 1.9e-158 562.8 351 83.2
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 6.4e-154 547.7 335 84.5
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-153 546.6 355 78.3
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 4.1e-153 545.0 330 85.2
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 2.5e-150 535.8 317 85.8
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 8.1e-149 530.8 284 92.6
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 2.6e-147 525.8 355 78.6
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 4.2e-145 518.5 284 91.2
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 5.8e-139 498.0 254 96.5
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 3.8e-138 495.4 355 74.9
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 1.6e-136 490.0 307 82.1
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 1.7e-135 486.5 254 94.9
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.7e-135 484.2 355 73.2
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 2.8e-133 479.2 254 93.7
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 3.4e-131 472.2 248 95.2
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 9.9e-131 470.7 246 95.5
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.5e-126 456.8 250 90.8
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.1e-125 453.0 280 83.6
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 7.6e-123 444.5 274 82.5
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 7.6e-123 444.5 274 82.5
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 2.3e-103 379.8 235 82.1
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 2.3e-103 379.8 197 97.0
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.0e-102 376.7 189 96.3
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.0e-102 376.7 189 96.3
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.0e-102 376.7 189 96.3
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.8e-100 370.2 355 60.3
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 4.1e-100 369.0 189 94.2
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 9.4e-97 357.8 455 48.6
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 1.0e-95 354.4 189 91.5
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 4.1e-84 315.8 328 55.2
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.5e-82 308.5 321 55.8
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 3.6e-80 302.8 212 76.4
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 5.2e-79 298.9 197 77.2
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.1e-73 281.2 165 87.3
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 3.4e-70 269.6 354 40.7
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 7.7e-67 258.5 290 55.2
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.6e-66 255.4 212 67.5
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 8.9e-63 245.0 273 52.0
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 9.2e-60 235.0 118 98.3
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-57 228.0 183 67.2
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 5.6e-57 225.7 235 57.9
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 3.1e-55 219.9 116 95.7
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.5e-54 217.6 128 85.2
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 2.0e-54 217.2 244 53.7
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 2.9e-53 213.4 175 64.6
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 2.7e-51 206.8 183 68.3
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 2.7e-51 206.8 133 71.4
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 3.5e-51 206.5 138 80.4
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.3e-50 204.5 148 75.7
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.5e-49 201.1 137 79.6
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 9.5e-49 198.4 105 90.5
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 7.5e-46 188.7 95 94.7
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 1.3e-45 188.0 105 90.5
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 1.1e-44 184.9 94 93.6
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 3.2e-44 183.3 109 80.7
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 1.5e-41 174.5 91 93.4
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 2.5e-41 173.7 91 91.2
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 5.6e-41 172.6 99 84.8
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 4.0e-39 166.4 165 58.8
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 1.4e-36 157.9 156 59.0
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.1e-36 156.4 220 48.2
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.2e-35 154.8 109 74.3
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 4.6e-35 152.9 85 87.1
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 1.3e-34 151.4 89 83.1
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 2.3e-34 150.6 79 92.4
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.5e-33 147.1 80 87.5
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 2.8e-32 143.7 163 57.1
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 8.1e-32 142.1 92 78.3
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 2.0e-30 137.5 106 69.8
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 7.6e-30 135.6 69 95.7
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 9.9e-30 135.2 129 61.2
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.1e-28 131.7 88 72.7
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.4e-23 114.8 73 79.5
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 5.3e-23 112.8 68 77.9
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 5.3e-23 112.8 68 77.9
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 1.5e-22 111.3 107 57.0
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 1.9e-20 104.4 91 63.7
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 5.4e-20 102.8 64 79.7
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 3.5e-19 100.1 98 61.2
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 1.3e-18 98.2 54 87.0
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 1.3e-18 98.2 54 92.6
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.9e-18 96.7 68 76.5
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 6.6e-18 95.9 53 83.0
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 5.6e-17 92.8 82 62.2
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 6.2e-16 89.4 46 93.5
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 3.1e-15 87.0 51 84.3
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 1.7e-13 81.3 48 85.4
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.2e-13 80.9 50 80.0
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.2e-12 76.6 36 94.4
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 5.5e-12 76.3 50 76.0
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 1.0e-10 72.0 46 76.1
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 3.0e-10 70.5 33 93.9
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 1.6e-08 64.7 44 70.5
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.0e-07 60.1 50 62.0


User provided reference genes

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