Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g107020 Amaranthus hybridus HOM05D006021 ORTHO05D007747 7.2e-43 176.8 86 100.0
AUR62038353 Chenopodium quinoa HOM05D006021 ORTHO05D007747 1.2e-29 132.9 84 75.0
AUR62041863 Chenopodium quinoa HOM05D006021 ORTHO05D007747 5.9e-29 130.6 84 72.6
EL10Ac2g03391 Beta vulgaris HOM05D006021 ORTHO05D007747 2.1e-26 122.1 78 75.6
Hund12509 Selenicereus undatus HOM05D006021 ORTHO05D007747 6.7e-25 117.1 86 66.3
Manes.10G031500 Manihot esculenta HOM05D006021 ORTHO05D007747 4.8e-23 110.9 72 70.8
Nitab4.5_0006262g0010 Nicotiana tabacum HOM05D006021 ORTHO05D007747 1.4e-22 109.4 81 63.0
Cc02_g08000 Coffea canephora HOM05D006021 ORTHO05D007747 3.1e-22 108.2 82 63.4
Sabra08G0039300 Salix brachista HOM05D006021 ORTHO05D007747 4.1e-22 107.8 79 64.6
Nitab4.5_0006095g0010 Nicotiana tabacum HOM05D006021 ORTHO05D007747 5.3e-22 107.5 81 61.7
Sc20g0002660 Simmondsia chinensis HOM05D006021 ORTHO05D007747 2.0e-21 105.5 82 62.2
TAR636G1861 Trochodendron aralioides HOM05D006021 ORTHO05D007747 2.7e-21 105.1 78 62.8
SalBow6G7105 Salvia bowleyana HOM05D006021 ORTHO05D007747 5.9e-21 104.0 80 60.0
Potri.008G054500 Populus trichocarpa HOM05D006021 ORTHO05D007747 7.7e-21 103.6 72 66.7
CsaV3_5G026490 Cucumis sativus L. HOM05D006021 ORTHO05D007747 1.3e-20 102.8 74 66.2
Eucgr.J00022 Eucalyptus grandis HOM05D006021 ORTHO05D007747 1.3e-20 102.8 79 63.3
Peaxi162Scf00015g00149 Petunia axillaris HOM05D006021 ORTHO05D007747 1.3e-20 102.8 81 61.7
GSVIVG01016534001 Vitis vinifera HOM05D006021 ORTHO05D007747 1.7e-20 102.4 77 62.3
CAN.G1013.12 Capsicum annuum HOM05D006021 ORTHO05D007747 2.2e-20 102.1 77 62.3
HanXRQChr14g0458171 Helianthus annuus HOM05D006021 ORTHO05D007747 2.9e-20 101.7 86 55.8
Migut.F01499 Erythranthe guttata HOM05D006021 ORTHO05D007747 3.8e-20 101.3 73 63.0
CSS0040652 Camellia sinensis var. sinensis HOM05D006021 ORTHO05D007747 5.0e-20 100.9 72 65.3
PSO151G0110 Papaver somniferum HOM05D006021 ORTHO05D007747 5.0e-20 100.9 78 61.5
PSO339G2275 Papaver somniferum HOM05D006021 ORTHO05D007747 5.0e-20 100.9 81 59.3
Oeu059724.1 Olea europaea HOM05D006021 ORTHO05D007747 6.5e-20 100.5 72 63.9
PGR044G0630 Punica granatum HOM05D006021 ORTHO05D007747 6.5e-20 100.5 85 58.8
Sed0015354 Sechium edule HOM05D006021 ORTHO05D007747 8.5e-20 100.1 62 72.6
vmacro10241 Vaccinium macrocarpon HOM05D006021 ORTHO05D007747 8.5e-20 100.1 72 63.9
Solyc05g054520.4 Solanum lycopersicum HOM05D006021 ORTHO05D007747 1.1e-19 99.8 80 58.8
Sopen05g033000 Solanum pennellii HOM05D006021 ORTHO05D007747 1.1e-19 99.8 80 57.5
CiPaw.02G183200 Carya illinoinensis HOM05D006021 ORTHO05D007747 1.5e-19 99.4 75 64.0
Lj1C935G17 Lonicera japonica HOM05D006021 ORTHO05D007747 1.9e-19 99.0 71 64.8
COL.COLO4_14996 Corchorus olitorius HOM05D006021 ORTHO05D007747 2.5e-19 98.6 84 57.1
Actinidia29224 Actinidia chinensis HOM05D006021 ORTHO05D007747 3.2e-19 98.2 72 63.9
MELO3C021654.2 Cucumis melo HOM05D006021 ORTHO05D007747 4.2e-19 97.8 62 72.6
PGSC0003DMG400023528 Solanum tuberosum HOM05D006021 ORTHO05D007747 4.2e-19 97.8 80 56.2
MBI05_g22898_MAGBIO Magnolia biondii HOM05D006021 ORTHO05D007747 5.5e-19 97.4 72 62.5
QL08p059185 Quercus lobata HOM05D006021 ORTHO05D007747 5.5e-19 97.4 69 63.8
CANSAT56G3892 Cannabis sativa HOM05D006021 ORTHO05D007747 9.4e-19 96.7 72 59.7
Duzib106G0269 Durio zibethinus HOM05D006021 ORTHO05D007747 9.4e-19 96.7 84 56.0
Gohir.A10G216800 Gossypium hirsutum HOM05D006021 ORTHO05D007747 9.4e-19 96.7 84 56.0
Lsat_1_v5_gn_2_119720 Lactuca sativa HOM05D006021 ORTHO05D007747 9.4e-19 96.7 84 56.0
MBI05_g44084_MAGBIO Magnolia biondii HOM05D006021 ORTHO05D007747 1.2e-18 96.3 73 61.6
Prupe.2G233300 Prunus persica HOM05D006021 ORTHO05D007747 1.2e-18 96.3 74 62.2
Thecc.10G044200 Theobroma cacao HOM05D006021 ORTHO05D007747 1.2e-18 96.3 72 62.5
TWI63G0178 Tripterygium wilfordii HOM05D006021 ORTHO05D007747 1.2e-18 96.3 72 61.1
Gohir.D10G225700 Gossypium hirsutum HOM05D006021 ORTHO05D007747 1.6e-18 95.9 82 57.3
Gorai.011G256900 Gossypium raimondii HOM05D006021 ORTHO05D007747 1.6e-18 95.9 82 57.3
MD01G1126400 Malus domestica HOM05D006021 ORTHO05D007747 2.1e-18 95.5 74 62.2
TWI15G0276 Tripterygium wilfordii HOM05D006021 ORTHO05D007747 4.7e-18 94.4 72 61.1
Cfa001493 Carpinus fangiana HOM05D006021 ORTHO05D007747 1.0e-17 93.2 73 56.2
Rhsim09G0165400 Rhododendron simsii HOM05D006021 ORTHO05D007747 1.0e-17 93.2 72 56.9
SHI22569 Sapria himalayana HOM05D006021 ORTHO05D007747 1.4e-17 92.8 80 56.2
SGA_v2.0_scaffold108G31009 Striga asiatica HOM05D006021 ORTHO05D002218 1.4e-17 92.8 73 56.2
FAN06G5027 Fragaria x ananassa HOM05D006021 ORTHO05D007747 2.3e-17 92.0 72 56.9
FAN10G0846 Fragaria x ananassa HOM05D006021 ORTHO05D007747 2.3e-17 92.0 72 56.9
THA.LOC104824271 Tarenaya hassleriana HOM05D006021 ORTHO05D007747 2.3e-17 92.0 69 63.8
ECA238G0092 Erigeron canadensis HOM05D006021 ORTHO05D007747 3.0e-17 91.7 73 58.9
FAN01G2389 Fragaria x ananassa HOM05D006021 ORTHO05D007747 3.0e-17 91.7 72 56.9
RcHm_v2.0_Chr1g0366501 Rosa chinensis HOM05D006021 ORTHO05D007747 3.0e-17 91.7 72 58.3
Atru.chr12.463 Acer truncatum HOM05D006021 ORTHO05D007747 4.0e-17 91.3 72 59.7
Atru.chr12.485 Acer truncatum HOM05D006021 ORTHO05D007747 4.0e-17 91.3 72 59.7
A05p06840 Brassica napus HOM05D006021 ORTHO05D007747 4.0e-17 91.3 62 66.1
BraA05t19650Z Brassica rapa HOM05D006021 ORTHO05D007747 4.0e-17 91.3 62 66.1
MD07G1196300 Malus domestica HOM05D006021 ORTHO05D007747 4.0e-17 91.3 74 59.5
BcaB02g09111 Brassica carinata HOM05D006021 ORTHO05D007747 6.8e-17 90.5 70 60.0
FAN03G1562 Fragaria x ananassa HOM05D006021 ORTHO05D007747 6.8e-17 90.5 72 55.6
Glyma.02G093000 Glycine max HOM05D006021 ORTHO05D007747 6.8e-17 90.5 64 65.6
BcaC02g12082 Brassica carinata HOM05D006021 ORTHO05D007747 8.8e-17 90.1 70 58.6
C04p08110 Brassica napus HOM05D006021 ORTHO05D007747 8.8e-17 90.1 70 58.6
BolC4t22421H Brassica oleracea HOM05D006021 ORTHO05D007747 8.8e-17 90.1 70 58.6
Psat3g181400 Pisum sativum HOM05D006021 ORTHO05D007747 8.8e-17 90.1 83 54.2
Glyma.18G289300 Glycine max HOM05D006021 ORTHO05D007747 1.2e-16 89.7 64 62.5
Lj1g0022473 Lotus japonicus HOM05D006021 ORTHO05D007747 1.2e-16 89.7 62 66.1
Sp4g21840 Schrenkiella parvula HOM05D006021 ORTHO05D007747 1.2e-16 89.7 70 58.6
FvH4_7g22110 Fragaria vesca HOM05D006021 ORTHO05D007747 1.5e-16 89.4 72 55.6
Aqoxy2G02096 Aquilegia oxysepala HOM05D006021 ORTHO05D007747 2.0e-16 89.0 65 60.0
AT2G39550 Arabidopsis thaliana HOM05D006021 ORTHO05D007747 2.0e-16 89.0 72 56.9
Carub.0004s2162 Capsella rubella HOM05D006021 ORTHO05D007747 2.0e-16 89.0 72 55.6
Phvul.008G012800 Phaseolus vulgaris HOM05D006021 ORTHO05D007747 2.0e-16 89.0 64 65.6
AL4G36960 Arabidopsis lyrata HOM05D006021 ORTHO05D007747 2.6e-16 88.6 72 56.9
Cpa.g.sc1.396 Carica papaya HOM05D006021 ORTHO05D007747 2.6e-16 88.6 81 53.1
VMungo1383G0472 Vigna mungo HOM05D006021 ORTHO05D007747 2.6e-16 88.6 64 65.6
arahy.Tifrunner.gnm1.ann1.53WLRG Arachis hypogaea HOM05D006021 ORTHO05D007747 4.4e-16 87.8 64 64.1
arahy.Tifrunner.gnm1.ann1.G8Y61E Arachis hypogaea HOM05D006021 ORTHO05D007747 4.4e-16 87.8 64 64.1
HPP92_001683 Vanilla planifolia HOM05D006021 ORTHO05D007747 7.5e-16 87.0 72 54.2
Os01g0150100 Oryza sativa ssp. japonica HOM05D006021 ORTHO05D007747 9.8e-16 86.7 72 55.6
Ciclev10031583m.g Citrus clementina HOM05D006021 ORTHO05D007747 1.3e-15 86.3 72 55.6
CARHR134420 Cardamine hirsuta HOM05D006021 ORTHO05D007747 2.2e-15 85.5 73 52.1
Aa31LG5G20070 Aethionema arabicum HOM05D006021 ORTHO05D007747 2.8e-15 85.1 69 56.5
TPR.G15521 Trifolium pratense HOM05D006021 ORTHO05D007747 3.7e-15 84.7 70 55.7
Thhalv10016771m.g Eutrema salsugineum HOM05D006021 ORTHO05D007747 4.8e-15 84.3 62 61.3
Ca_07253_v3 Cicer arietinum L. HOM05D006021 ORTHO05D007747 6.3e-15 84.0 63 65.1
Nn2g10394 Nelumbo nucifera HOM05D006021 ORTHO05D007747 6.3e-15 84.0 98 48.0
CDE09G0613 Ceratophyllum demersum HOM05D006021 ORTHO05D007747 8.3e-15 83.6 68 54.4
Medtr7g024540 Medicago truncatula HOM05D006021 ORTHO05D007747 8.3e-15 83.6 60 63.3
ClCG09G019960 Citrullus lanatus HOM05D006021 ORTHO05D007747 7.0e-14 80.5 109 42.2
Hma1.2p1_0683F.1_g202880 Hydrangea macrophylla HOM05D006021 ORTHO05D007747 9.1e-14 80.1 48 77.1
Lalb_Chr10g0091731 Lupinus albus HOM05D006021 ORTHO05D007747 1.6e-13 79.3 63 60.3
Dinv26002 Davidia involucrata HOM05D006021 ORTHO05D007747 1.5e-11 72.8 51 64.7
Zm00001eb124350 Zea mays HOM05D006021 ORTHO05D007747 4.2e-11 71.2 63 49.2
unitig_736.g22256 Utricularia gibba HOM05D006021 ORTHO05D007747 1.6e-10 69.3 48 66.7
DCAR_012451 Daucus carota HOM05D006021 ORTHO05D007747 3.6e-10 68.2 77 41.6
Haze_17048 Corylus avellana HOM05D006021 ORTHO05D007747 4.7e-10 67.8 74 45.9
Potri.010G206001 Populus trichocarpa HOM05D006021 ORTHO05D007747 1.8e-09 65.9 48 62.5
FAN01G3064 Fragaria x ananassa HOM05D006021 ORTHO05D007747 3.0e-09 65.1 46 60.9
Migut.F01631 Erythranthe guttata HOM05D006021 ORTHO05D007747 9.8e-08 60.1 51 54.9
Oeu011120.1 Olea europaea HOM05D006021 ORTHO05D007747 2.2e-07 58.9 59 55.9
BcaB06g29096 Brassica carinata HOM05D006021 ORTHO05D007747 2.8e-07 58.5 47 57.4
Pp3c5_25290 Physcomitrium patens HOM05D006021 ORTHO05D007747 3.7e-07 58.2 53 49.1
ATR0559G127 Amborella trichopoda HOM05D006021 ORTHO05D007747 1.1e-06 56.6 60 46.7
Mapoly0010s0084 Marchantia polymorpha HOM05D006021 ORTHO05D007747 9.2e-06 53.5 64 39.1


User provided reference genes

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