Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 3526.9 1763 100.0
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2813.5 1816 79.2
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2789.6 1942 73.9
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2766.1 1825 77.9
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2298.5 1820 65.1
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2254.6 1852 63.7
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2228.4 1931 61.3
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2179.8 1835 62.8
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2174.8 1834 62.3
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2160.6 1938 59.3
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2157.5 1832 61.7
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2152.9 1840 60.9
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2150.6 1833 61.5
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2143.2 1831 61.1
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2142.1 1841 61.3
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2142.1 1830 61.2
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2137.1 1832 61.6
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2136.3 1798 62.4
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2131.3 1837 60.3
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2125.9 1828 60.9
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2125.9 1835 60.9
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2122.8 1836 60.1
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 2119.7 1825 60.1
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 2112.0 1821 60.1
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2109.0 1842 59.8
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2107.4 1949 58.3
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2097.8 1856 59.4
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2093.9 1833 60.2
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2089.3 1829 60.1
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2087.8 1889 58.4
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 2084.7 1820 59.6
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2084.7 1835 59.9
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 2082.4 1823 59.7
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2081.2 1826 60.0
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2080.1 1949 57.5
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2078.5 1835 59.6
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 2077.4 1823 60.1
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 2072.0 1836 58.7
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 2070.4 1834 59.0
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2068.5 1860 58.7
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2066.2 1969 57.1
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 2065.8 1835 58.2
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 2059.6 1835 58.6
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2058.9 1837 59.2
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2057.3 1831 59.9
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 2054.6 1837 58.6
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2046.9 1830 59.2
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 2042.7 1817 59.7
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2034.2 1830 58.5
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2027.3 1705 62.1
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2025.4 1900 57.8
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2021.1 1820 58.8
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2013.4 1824 58.2
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 1996.9 1831 57.2
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 1981.1 1840 57.7
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 1980.7 1834 57.9
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 1969.9 1837 57.0
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 1961.8 1826 56.9
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 1955.6 1823 56.9
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 1952.2 1835 57.1
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 1949.9 1832 57.4
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 1946.8 1735 59.1
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 1944.5 1822 57.0
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1941.8 1825 57.2
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1928.7 1837 56.2
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1928.3 1837 56.4
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1921.4 1809 56.8
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 1916.7 1728 58.8
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 1907.1 1877 55.0
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1896.3 1825 56.2
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 1895.2 1849 55.7
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 1894.0 1702 59.0
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 1888.6 1591 62.0
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1880.1 1855 54.9
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 1876.3 1857 55.3
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 1874.4 1829 55.4
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 1853.2 1852 54.2
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 1840.9 1853 54.1
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 1828.5 1837 52.9
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 1808.5 1839 54.5
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1786.2 1220 74.4
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 1772.3 1814 53.9
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 1755.0 1454 64.0
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1706.0 1759 54.6
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1665.6 1472 60.4
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1515.4 1487 55.2
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1471.4 1337 58.4
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1470.3 1212 62.7
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1387.9 1744 47.3
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1359.7 1414 54.1
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1297.0 965 68.4
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1247.3 1960 39.1
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1228.8 1933 39.5
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1188.3 1782 40.0
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1162.9 1054 58.6
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1126.7 1334 49.3
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1075.8 920 59.0
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.0e-305 1054.3 902 59.6
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 4.9e-295 1018.8 1209 47.6
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 9.8e-288 994.6 1813 36.9
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 1.0e-284 984.6 1153 49.7
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 8.6e-284 981.5 787 64.3
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 2.8e-274 949.9 803 63.4
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 1.1e-251 874.8 916 53.6
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 4.9e-247 859.4 2200 31.0
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 3.5e-229 800.0 811 53.9
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.0e-191 675.6 732 51.1
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 1.7e-186 658.3 857 44.6
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.5e-184 650.6 520 63.1
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 3.4e-179 634.0 637 53.4
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.2e-168 599.0 833 45.9
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 2.8e-165 587.8 512 58.4
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 3.4e-163 580.9 516 58.7
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 2.4e-161 574.7 535 57.6
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.0e-159 569.3 627 49.9
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.3e-156 558.1 1051 36.2
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 4.1e-153 547.4 527 53.3
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 9.2e-153 546.2 561 54.2
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.0e-151 542.7 515 56.7
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 4.9e-138 497.3 829 39.0
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 4.8e-133 480.7 730 40.3
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 4.3e-126 457.6 364 63.5
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 7.6e-123 446.8 434 56.0
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 1.2e-120 439.5 369 61.0
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 5.3e-116 424.1 431 54.8
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 7.9e-96 357.1 327 58.4
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.4e-95 356.3 412 51.5
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 4.8e-93 347.8 400 49.0
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 1.0e-90 340.1 313 56.9
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 2.7e-88 332.0 312 57.7
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 1.5e-81 309.7 314 52.2
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 1.9e-81 309.3 340 50.6
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.4e-78 298.5 363 48.8
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 1.4e-76 293.1 820 29.8
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 1.0e-71 276.9 253 58.9
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 5.2e-71 274.6 1148 25.8
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 8.8e-71 273.9 164 79.9
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 6.6e-58 231.1 428 36.9
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 7.5e-54 217.6 321 40.8
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 2.9e-45 189.1 163 58.9
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 4.1e-44 185.3 235 43.0
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 9.5e-41 174.1 155 60.0
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 3.4e-38 165.6 128 64.8
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 2.4e-36 159.5 455 27.7
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 7.8e-35 154.5 228 41.7
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 1.4e-31 143.7 357 31.9
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 2.4e-31 142.9 132 55.3
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.4e-30 139.0 152 50.0
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 7.6e-30 137.9 160 44.4
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 1.3e-29 137.1 123 52.0
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 4.9e-29 135.2 127 55.9
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 5.4e-28 131.7 99 63.6
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 6.0e-27 128.3 107 59.8
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 7.8e-27 127.9 222 32.4
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 1.0e-26 127.5 114 55.3
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 8.7e-26 124.4 109 60.6
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.4e-23 116.3 103 59.2
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 9.0e-23 114.4 296 31.8
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 7.6e-22 111.3 178 43.3
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 8.4e-21 107.8 125 44.0
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 2.4e-20 106.3 76 65.8
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 7.1e-20 104.8 78 65.4
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 7.1e-20 104.8 169 42.6
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 9.3e-20 104.4 142 47.9
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 2.1e-19 103.2 121 50.4
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 6.0e-19 101.7 54 79.6
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 2.1e-16 93.2 172 36.0
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 3.6e-16 92.4 87 51.7
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 4.8e-16 92.0 210 32.9
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 1.1e-15 90.9 97 49.5
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 1.4e-15 90.5 118 42.4
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 7.6e-14 84.7 78 52.6
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 6.4e-13 81.6 61 62.3
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 5.5e-12 78.6 77 55.8
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 9.3e-12 77.8 56 75.0
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 1.0e-10 74.3 63 63.5
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.3e-08 67.4 76 48.7
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 1.3e-08 67.4 76 47.4
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 4.0e-07 62.4 72 47.2
Sabra10G0144400 Salix brachista HOM05D003492 ORTHO05D019467 6.9e-07 61.6 129 34.1
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 9.0e-07 61.2 60 55.0


User provided reference genes

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