Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 3.0e-185 651.7 334 100.0
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 1.0e-145 520.4 369 75.3
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 2.6e-141 505.8 375 72.8
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 4.8e-135 485.0 393 68.7
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 1.8e-134 483.0 375 68.0
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 1.5e-107 393.7 377 56.2
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 4.2e-107 392.1 377 56.0
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 5.5e-107 391.7 378 56.3
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 2.1e-106 389.8 376 55.3
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 1.4e-105 387.1 377 54.9
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 2.3e-105 386.3 376 55.9
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 5.2e-105 385.2 377 54.6
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 5.2e-105 385.2 377 54.6
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 1.1e-104 384.0 375 55.7
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 1.1e-104 384.0 379 54.9
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 2.0e-104 383.3 385 53.5
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 2.6e-104 382.9 380 55.3
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 5.7e-104 381.7 377 56.0
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.8e-103 379.4 379 54.6
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 1.1e-102 377.5 364 54.9
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 3.1e-102 375.9 379 54.1
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 7.0e-102 374.8 378 54.2
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 9.1e-102 374.4 377 54.4
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.5e-101 372.5 379 53.6
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 7.7e-101 371.3 373 54.4
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 1.3e-100 370.5 377 52.5
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 2.2e-100 369.8 378 54.8
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 2.2e-100 369.8 376 54.3
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 2.2e-100 369.8 382 53.7
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 2.9e-100 369.4 377 52.8
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 5.0e-100 368.6 374 54.3
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 1.5e-99 367.1 373 52.8
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 1.9e-99 366.7 370 54.9
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 4.2e-99 365.5 377 52.0
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 5.5e-99 365.2 370 53.0
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 9.4e-99 364.4 377 52.5
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 1.6e-98 363.6 377 53.1
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 2.7e-98 362.8 376 51.6
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 5.2e-97 358.6 380 52.9
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 6.8e-97 358.2 376 51.9
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 1.5e-96 357.1 374 52.1
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 7.5e-96 354.8 377 51.2
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 1.7e-95 353.6 376 51.9
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 1.7e-95 353.6 370 51.6
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 1.7e-95 353.6 377 51.5
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 2.8e-95 352.8 377 51.2
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 1.1e-94 350.9 378 52.1
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 1.4e-94 350.5 313 56.5
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 1.8e-94 350.1 376 51.1
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 4.1e-94 349.0 371 52.0
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 7.0e-94 348.2 379 52.0
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 9.1e-94 347.8 379 50.9
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 1.2e-93 347.4 376 52.4
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 5.9e-93 345.1 379 52.8
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 5.9e-93 345.1 381 50.4
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 1.3e-92 344.0 376 52.1
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 1.7e-92 343.6 375 52.0
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 8.5e-92 341.3 320 55.6
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 1.5e-91 340.5 376 51.9
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 1.9e-91 340.1 375 50.9
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 7.2e-91 338.2 376 51.1
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 6.1e-90 335.1 375 50.7
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 2.3e-89 333.2 381 50.1
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 1.4e-86 323.9 378 47.6
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 3.1e-86 322.8 392 48.7
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 1.2e-85 320.9 376 50.0
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 4.5e-85 318.9 379 47.2
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 1.3e-84 317.4 380 46.8
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 1.3e-84 317.4 380 46.6
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 1.1e-83 314.3 380 46.3
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 4.3e-83 312.4 378 48.9
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 5.6e-83 312.0 380 46.3
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 2.1e-82 310.1 372 49.5
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 8.0e-82 308.1 390 45.4
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 8.0e-82 308.1 378 47.6
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 1.0e-81 307.8 386 44.8
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 1.8e-81 307.0 380 45.8
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 1.8e-81 307.0 380 45.8
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 8.9e-81 304.7 380 45.5
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 4.4e-80 302.4 384 44.8
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 7.5e-80 301.6 257 62.3
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 1.3e-79 300.8 380 45.5
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 2.2e-79 300.1 384 44.3
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 4.9e-79 298.9 372 48.4
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 3.2e-78 296.2 384 45.3
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 4.1e-78 295.8 384 45.3
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 1.6e-77 293.9 377 48.0
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 3.5e-77 292.7 386 44.0
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 4.6e-77 292.4 381 43.6
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 7.3e-75 285.0 404 43.1
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 1.3e-71 274.2 324 47.5
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 4.9e-71 272.3 253 54.9
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 4.6e-69 265.8 380 42.6
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 7.5e-64 248.4 199 60.8
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 3.9e-60 236.1 388 39.9
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 8.1e-58 228.4 281 46.6
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 3.4e-56 223.0 310 44.8
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 2.4e-49 200.3 385 34.5
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 1.0e-44 184.9 225 49.3
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 1.7e-44 184.1 165 57.0
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 3.0e-44 183.3 178 52.8
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 1.7e-39 167.5 279 37.6
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 4.9e-39 166.0 362 34.5
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 3.9e-36 156.4 161 53.4
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 1.5e-35 154.5 363 32.0
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 4.8e-34 149.4 233 40.3
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 7.6e-32 142.1 170 50.6
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 4.9e-31 139.4 359 31.5
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 2.4e-30 137.1 168 48.2
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 4.2e-30 136.3 169 50.9
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 2.7e-29 133.7 166 48.2
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 2.3e-28 130.6 156 46.2
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.3e-23 114.8 189 35.4
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 2.2e-23 114.0 159 42.1
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.2e-23 114.0 189 34.9
Ah.10g037740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 1.3e-18 98.2 74 62.2
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 9.0e-17 92.0 164 31.7
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.7e-15 87.8 98 41.8
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.7e-15 87.8 95 44.2
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 9.3e-14 82.0 72 51.4
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 6.1e-13 79.3 88 45.5
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 3.7e-10 70.1 82 41.5
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 3.1e-09 67.0 141 36.9
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.9e-07 60.5 68 41.2


User provided reference genes

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