Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.16g100710 Amaranthus hybridus HOM05D000916 ORTHO05D009274 4.9e-76 287.7 147 100.0
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 5.0e-44 181.4 169 61.5
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 4.2e-43 178.3 174 56.9
AUR62009428 Chenopodium quinoa HOM05D000916 ORTHO05D009274 2.6e-37 159.1 98 77.6
Duzib133G0774 Durio zibethinus HOM05D000916 ORTHO05D009274 4.7e-34 148.3 141 54.6
MD02G1299300 Malus domestica HOM05D000916 ORTHO05D009274 2.0e-32 142.9 101 63.4
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 5.7e-32 141.4 166 46.4
Nn2g15166 Nelumbo nucifera HOM05D000916 ORTHO05D009274 1.4e-30 136.7 98 63.3
PSO170G4961 Papaver somniferum HOM05D000916 ORTHO05D009274 1.8e-30 136.3 149 49.0
GSVIVG01001443001 Vitis vinifera HOM05D000916 ORTHO05D009274 2.4e-30 136.0 96 62.5
Gohir.A08G055800 Gossypium hirsutum HOM05D000916 ORTHO05D009274 5.3e-30 134.8 142 56.3
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 7.0e-30 134.4 97 62.9
Lj9P642T24 Lonicera japonica HOM05D000916 ORTHO05D009274 7.0e-30 134.4 98 63.3
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 7.0e-30 134.4 104 60.6
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 9.1e-30 134.0 97 63.9
PGR031G2328 Punica granatum HOM05D000916 ORTHO05D009274 9.1e-30 134.0 98 59.2
CSS0046245 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D009274 2.0e-29 132.9 97 63.9
Actinidia06285 Actinidia chinensis HOM05D000916 ORTHO05D009274 2.7e-29 132.5 98 66.3
Dinv07424 Davidia involucrata HOM05D000916 ORTHO05D009274 2.7e-29 132.5 98 64.3
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 3.5e-29 132.1 157 44.6
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 3.5e-29 132.1 98 63.3
Peaxi162Scf01108g00212 Petunia axillaris HOM05D000916 ORTHO05D009274 4.5e-29 131.7 94 64.9
Solyc01g088030.4 Solanum lycopersicum HOM05D000916 ORTHO05D009274 4.5e-29 131.7 96 63.5
TAR636G3509 Trochodendron aralioides HOM05D000916 ORTHO05D009274 4.5e-29 131.7 98 62.2
Atru.chr11.2553 Acer truncatum HOM05D000916 ORTHO05D009274 5.9e-29 131.3 99 62.6
CiPaw.14G004300 Carya illinoinensis HOM05D000916 ORTHO05D009274 5.9e-29 131.3 98 61.2
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 5.9e-29 131.3 95 62.1
TAR636G0367 Trochodendron aralioides HOM05D000916 ORTHO05D009274 5.9e-29 131.3 98 62.2
Prupe.2G025000 Prunus persica HOM05D000916 ORTHO05D009274 1.0e-28 130.6 98 60.2
FvH4_7g01930 Fragaria vesca HOM05D000916 ORTHO05D009274 1.3e-28 130.2 98 60.2
FAN06G1234 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.3e-28 130.2 98 60.2
Sopen01g034920 Solanum pennellii HOM05D000916 ORTHO05D009274 1.3e-28 130.2 96 62.5
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 1.7e-28 129.8 106 56.6
FAN03G1280 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.7e-28 129.8 98 60.2
RcHm_v2.0_Chr1g0318771 Rosa chinensis HOM05D000916 ORTHO05D009274 1.7e-28 129.8 98 58.2
PGSC0003DMG400006832 Solanum tuberosum HOM05D000916 ORTHO05D009274 2.2e-28 129.4 100 61.0
CAN.G410.4 Capsicum annuum HOM05D000916 ORTHO05D009274 2.9e-28 129.0 96 62.5
Eucgr.G03277 Eucalyptus grandis HOM05D000916 ORTHO05D009274 3.8e-28 128.6 97 63.9
Sabra16G0159300 Salix brachista HOM05D000916 ORTHO05D009274 3.8e-28 128.6 97 58.8
Aqoxy2G00212 Aquilegia oxysepala HOM05D000916 ORTHO05D009274 5.0e-28 128.3 160 45.0
Rhsim07G0060800 Rhododendron simsii HOM05D000916 ORTHO05D009274 5.0e-28 128.3 98 63.3
SGA_v2.0_scaffold5G02941 Striga asiatica HOM05D000916 ORTHO05D009274 6.5e-28 127.9 104 56.7
Sc11g0009010 Simmondsia chinensis HOM05D000916 ORTHO05D009274 8.5e-28 127.5 173 42.8
PSO210G2598 Papaver somniferum HOM05D000916 ORTHO05D009274 1.1e-27 127.1 152 47.4
arahy.Tifrunner.gnm1.ann1.W0KZJE Arachis hypogaea HOM05D000916 ORTHO05D009274 1.9e-27 126.3 98 60.2
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 1.9e-27 126.3 96 62.5
Manes.07G012200 Manihot esculenta HOM05D000916 ORTHO05D009274 1.9e-27 126.3 98 57.1
Medtr0003s0480 Medicago truncatula HOM05D000916 ORTHO05D009274 2.5e-27 125.9 100 58.0
Rhsim07G0060200 Rhododendron simsii HOM05D000916 ORTHO05D009274 3.2e-27 125.6 98 61.2
vmacro13705 Vaccinium macrocarpon HOM05D000916 ORTHO05D009274 3.2e-27 125.6 99 59.6
Psat0s488g0040 Pisum sativum HOM05D000916 ORTHO05D009274 5.5e-27 124.8 98 62.2
Potri.001G259216 Populus trichocarpa HOM05D000916 ORTHO05D009274 5.5e-27 124.8 97 56.7
Potri.001G259900 Populus trichocarpa HOM05D000916 ORTHO05D009274 5.5e-27 124.8 97 56.7
Potri.001G260600 Populus trichocarpa HOM05D000916 ORTHO05D009274 5.5e-27 124.8 97 57.7
Ciclev10032919m.g Citrus clementina HOM05D000916 ORTHO05D009274 9.4e-27 124.0 96 55.2
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 1.6e-26 123.2 96 63.5
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 1.6e-26 123.2 96 59.4
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 3.6e-26 122.1 96 59.4
Lj3g0014758 Lotus japonicus HOM05D000916 ORTHO05D009274 4.7e-26 121.7 155 45.8
Aa31LG9G13290 Aethionema arabicum HOM05D000916 ORTHO05D009274 8.0e-26 120.9 103 54.4
Cpa.g.sc197.27 Carica papaya HOM05D000916 ORTHO05D009274 1.4e-25 120.2 96 60.4
Glyma.09G226100 Glycine max HOM05D000916 ORTHO05D009274 2.3e-25 119.4 98 60.2
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 4.0e-25 118.6 101 53.5
DCAR_022368 Daucus carota HOM05D000916 ORTHO05D009274 5.2e-25 118.2 164 43.9
VMungo1127G0561 Vigna mungo HOM05D000916 ORTHO05D009274 6.8e-25 117.9 98 58.2
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 8.8e-25 117.5 101 55.4
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 8.8e-25 117.5 104 50.0
Lalb_Chr03g0024151 Lupinus albus HOM05D000916 ORTHO05D009274 1.2e-24 117.1 96 57.3
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 1.5e-24 116.7 101 52.5
Phvul.011G013300 Phaseolus vulgaris HOM05D000916 ORTHO05D009274 1.5e-24 116.7 98 56.1
Os11g0146550 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 2.0e-24 116.3 95 60.0
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 5.7e-24 114.8 95 57.9
THA.LOC104826696 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 7.5e-24 114.4 98 54.1
THA.LOC104826705 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 7.5e-24 114.4 98 54.1
A02p27690 Brassica napus HOM05D000916 ORTHO05D009274 9.8e-24 114.0 95 53.7
BraA02t07808Z Brassica rapa HOM05D000916 ORTHO05D009274 9.8e-24 114.0 95 53.7
Carub.0008s0547 Capsella rubella HOM05D000916 ORTHO05D009274 2.2e-23 112.8 93 53.8
Thhalv10003279m.g Eutrema salsugineum HOM05D000916 ORTHO05D009274 2.2e-23 112.8 93 54.8
FAN03G2260 Fragaria x ananassa HOM05D000916 ORTHO05D009274 2.2e-23 112.8 82 64.6
Sed0025824 Sechium edule HOM05D000916 ORTHO05D009274 2.2e-23 112.8 101 51.5
Sp2g08020 Schrenkiella parvula HOM05D000916 ORTHO05D009274 3.7e-23 112.1 150 42.0
AT5G43210 Arabidopsis thaliana HOM05D000916 ORTHO05D009274 4.8e-23 111.7 93 53.8
BcaB07g30592 Brassica carinata HOM05D000916 ORTHO05D009274 4.8e-23 111.7 93 52.7
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 1.8e-22 109.8 101 55.4
THA.LOC104827433 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 1.6e-21 106.7 93 54.8
TAR636G0653 Trochodendron aralioides HOM05D000916 ORTHO05D009274 1.0e-20 104.0 54 83.3
CANSAT80G0736 Cannabis sativa HOM05D000916 ORTHO05D009274 1.3e-20 103.6 144 47.2
Potri.001G260300 Populus trichocarpa HOM05D000916 ORTHO05D009274 3.8e-20 102.1 64 68.8
Hma1.2p1_0579F.1_g182540 Hydrangea macrophylla HOM05D000916 ORTHO05D009274 1.1e-19 100.5 60 75.0
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 3.4e-16 89.0 53 75.5
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 3.5e-13 79.0 92 44.6
RcHm_v2.0_Chr1g0318641 Rosa chinensis HOM05D000916 ORTHO05D009274 1.7e-12 76.6 46 69.6
FAN01G3008 Fragaria x ananassa HOM05D000916 ORTHO05D009274 3.3e-11 72.4 35 82.9
Cfa010832 Carpinus fangiana HOM05D000916 ORTHO05D009274 1.0e-09 67.4 35 77.1
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 3.1e-09 65.9 108 36.1
RcHm_v2.0_Chr1g0318631 Rosa chinensis HOM05D000916 ORTHO05D009274 8.9e-09 64.3 72 41.7
Os12g0143300 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 2.6e-08 62.8 35 80.0
Nitab4.5_0006695g0040 Nicotiana tabacum HOM05D000916 ORTHO05D009274 4.4e-08 62.0 68 48.5
Atru.chr11.2549 Acer truncatum HOM05D000916 ORTHO05D009274 1.7e-07 60.1 55 52.7
AL8G17370 Arabidopsis lyrata HOM05D000916 ORTHO05D009274 2.2e-07 59.7 30 76.7
AagrBONN_evm.TU.Sc2ySwM_117.2287 Anthoceros agrestis HOM05D000916 ORTHO05D009274 6.4e-07 58.2 96 39.6


User provided reference genes

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