Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 1.2e-255 886.7 748 100.0
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 2.6e-64 251.1 774 39.3
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 9.7e-35 152.9 129 55.8
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 1.9e-30 138.7 119 58.8
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 7.2e-30 136.7 132 51.5
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.7e-29 134.8 128 53.1
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 7.9e-29 133.3 120 55.0
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.0e-28 132.9 129 52.7
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.4e-28 132.5 128 53.1
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 1.8e-28 132.1 128 52.3
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.8e-28 132.1 128 52.3
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.8e-28 132.1 128 52.3
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 3.0e-28 131.3 154 45.5
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 3.9e-28 131.0 121 55.4
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 3.9e-28 131.0 137 48.9
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 5.1e-28 130.6 138 48.6
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 6.7e-28 130.2 135 47.4
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 6.7e-28 130.2 124 52.4
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 1.9e-27 128.6 126 54.0
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 1.9e-27 128.6 118 53.4
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 2.5e-27 128.3 103 58.3
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 2.5e-27 128.3 147 46.9
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 3.3e-27 127.9 118 53.4
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 3.3e-27 127.9 120 51.7
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 4.3e-27 127.5 135 47.4
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 4.3e-27 127.5 129 51.9
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 5.7e-27 127.1 131 48.9
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 9.7e-27 126.3 134 50.7
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.7e-26 125.6 138 45.7
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.2e-26 125.2 146 47.3
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 2.8e-26 124.8 103 56.3
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 6.3e-26 123.6 136 49.3
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 8.2e-26 123.2 129 49.6
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 8.2e-26 123.2 138 49.3
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 1.1e-25 122.9 131 49.6
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 1.1e-25 122.9 138 46.4
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.4e-25 122.5 143 49.0
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 4.1e-25 120.9 120 51.7
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 5.3e-25 120.6 149 47.0
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 5.3e-25 120.6 122 47.5
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 5.3e-25 120.6 143 47.6
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 6.9e-25 120.2 139 48.2
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 9.1e-25 119.8 154 43.5
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 9.1e-25 119.8 139 48.2
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 9.1e-25 119.8 129 50.4
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 9.1e-25 119.8 135 46.7
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 9.1e-25 119.8 126 45.2
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 1.5e-24 119.0 129 50.4
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 2.0e-24 118.6 146 49.3
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 2.6e-24 118.2 139 47.5
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 2.6e-24 118.2 127 51.2
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 3.4e-24 117.9 133 48.1
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 4.5e-24 117.5 105 59.0
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 4.5e-24 117.5 101 56.4
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 4.5e-24 117.5 101 56.4
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 5.9e-24 117.1 136 44.1
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 5.9e-24 117.1 99 57.6
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 7.7e-24 116.7 135 47.4
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 7.7e-24 116.7 135 47.4
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 1.0e-23 116.3 118 51.7
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 1.3e-23 115.9 137 48.2
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 2.2e-23 115.2 105 55.2
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.2e-23 115.2 101 54.5
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 2.9e-23 114.8 128 43.8
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 2.9e-23 114.8 145 46.2
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 3.8e-23 114.4 147 46.3
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 5.0e-23 114.0 128 47.7
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 5.0e-23 114.0 123 44.7
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 5.0e-23 114.0 106 53.8
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 5.0e-23 114.0 142 44.4
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 6.5e-23 113.6 107 50.5
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 6.5e-23 113.6 107 50.5
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 8.5e-23 113.2 123 50.4
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 8.5e-23 113.2 117 49.6
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.1e-22 112.8 127 46.5
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.1e-22 112.8 146 47.3
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 1.1e-22 112.8 147 46.3
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 1.1e-22 112.8 142 46.5
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 1.1e-22 112.8 104 52.9
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 1.4e-22 112.5 117 48.7
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 1.4e-22 112.5 106 51.9
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 1.9e-22 112.1 133 48.9
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 1.9e-22 112.1 103 54.4
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 2.5e-22 111.7 123 46.3
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 2.5e-22 111.7 123 51.2
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 4.2e-22 110.9 103 56.3
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 4.2e-22 110.9 127 48.8
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 5.5e-22 110.5 129 46.5
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 5.5e-22 110.5 104 51.9
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 5.5e-22 110.5 101 55.4
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 7.2e-22 110.2 143 46.2
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 7.2e-22 110.2 107 50.5
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 7.2e-22 110.2 138 46.4
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 9.4e-22 109.8 130 46.2
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 9.4e-22 109.8 117 47.0
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 9.4e-22 109.8 117 47.0
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.2e-21 109.4 117 47.0
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 1.2e-21 109.4 101 54.5
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 1.6e-21 109.0 128 45.3
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.6e-21 109.0 126 46.0
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 2.1e-21 108.6 113 48.7
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 2.1e-21 108.6 129 44.2
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.1e-21 108.6 101 54.5
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.7e-21 108.2 120 45.8
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.7e-21 108.2 131 46.6
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 2.7e-21 108.2 90 57.8
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 3.6e-21 107.8 131 45.8
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 3.6e-21 107.8 119 47.1
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 3.6e-21 107.8 129 45.7
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 3.6e-21 107.8 129 45.7
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 3.6e-21 107.8 147 44.2
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 6.1e-21 107.1 106 49.1
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 1.0e-20 106.3 121 47.1
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 1.4e-20 105.9 158 41.1
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 1.8e-20 105.5 130 46.2
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 1.8e-20 105.5 131 45.8
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.8e-20 105.5 99 54.5
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.8e-20 105.5 127 45.7
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 2.3e-20 105.1 134 43.3
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 3.0e-20 104.8 134 43.3
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.9e-20 104.4 144 43.1
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 8.8e-20 103.2 144 43.1
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 1.1e-19 102.8 103 49.5
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 7.4e-19 100.1 121 46.3
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 1.3e-18 99.4 120 49.2
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 4.8e-18 97.4 109 49.5
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.8e-17 95.5 122 41.0
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 7.0e-17 93.6 99 48.5
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 1.2e-16 92.8 104 49.0
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 2.6e-16 91.7 140 42.9
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 7.7e-16 90.1 121 42.1
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 2.5e-14 85.1 103 44.7
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 1.4e-12 79.3 102 38.2
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 5.2e-12 77.4 107 43.0
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.5e-11 75.9 106 41.5
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 7.4e-11 73.6 160 33.8
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 3.1e-09 68.2 104 38.5
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 4.5e-08 64.3 96 37.5
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 5.9e-08 63.9 49 63.3
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 1.3e-07 62.8 92 34.8
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 1.7e-07 62.4 83 43.4
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 2.2e-07 62.0 97 35.1
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 8.5e-07 60.1 76 46.1
GSVIVG01017919001 Vitis vinifera HOM05D004938 ORTHO05D006035 8.5e-07 60.1 115 32.2
Sed0021968 Sechium edule HOM05D004938 ORTHO05D006035 1.1e-06 59.7 120 34.2
Medtr5g005810 Medicago truncatula HOM05D004938 ORTHO05D006035 1.5e-06 59.3 115 34.8
Potri.008G149700 Populus trichocarpa HOM05D004938 ORTHO05D006035 1.5e-06 59.3 120 32.5
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 1.9e-06 58.9 148 30.4
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 1.9e-06 58.9 148 30.4
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.5e-06 58.5 42 57.1
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 2.5e-06 58.5 97 35.1
Glyma.01G239700 Glycine max HOM05D004938 ORTHO05D006035 2.5e-06 58.5 117 34.2
Nn4g26248 Nelumbo nucifera HOM05D004938 ORTHO05D006035 2.5e-06 58.5 118 32.2
ATR0626G035 Amborella trichopoda HOM05D004938 ORTHO05D006035 3.2e-06 58.2 119 34.5
Rhsim04G0204400 Rhododendron simsii HOM05D004938 ORTHO05D006035 3.2e-06 58.2 122 34.4
CsaV3_6G038300 Cucumis sativus L. HOM05D004938 ORTHO05D006035 4.2e-06 57.8 115 33.9
MCO07G413 Micromonas commoda HOM05D004938 ORTHO05D006035 4.2e-06 57.8 108 37.0
MELO3C014494.2 Cucumis melo HOM05D004938 ORTHO05D006035 5.5e-06 57.4 115 33.9
Lj1g0006253 Lotus japonicus HOM05D004938 ORTHO05D006035 5.5e-06 57.4 117 35.0
Sc13g0004170 Simmondsia chinensis HOM05D004938 ORTHO05D006035 5.5e-06 57.4 120 31.7
Aqoxy2G03327 Aquilegia oxysepala HOM05D004938 ORTHO05D006035 7.2e-06 57.0 115 33.0
PSO170G2096 Papaver somniferum HOM05D004938 ORTHO05D006035 7.2e-06 57.0 118 30.5
Actinidia23495 Actinidia chinensis HOM05D004938 ORTHO05D006035 9.4e-06 56.6 117 35.0
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 9.4e-06 56.6 95 36.8
CSS0042089 Camellia sinensis var. sinensis HOM05D004938 ORTHO05D006035 9.4e-06 56.6 120 35.0
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 9.4e-06 56.6 120 35.0
Cre09.g402350 Chlamydomonas reinhardtii HOM05D004833 ORTHO05D005671 9.4e-06 56.6 103 34.0
ClCG06G005970 Citrullus lanatus HOM05D004938 ORTHO05D006035 9.4e-06 56.6 115 33.0
Phvul.002G047600 Phaseolus vulgaris HOM05D004938 ORTHO05D006035 9.4e-06 56.6 115 34.8
VMungo1215G0596 Vigna mungo HOM05D004938 ORTHO05D006035 9.4e-06 56.6 115 34.8


User provided reference genes

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