Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 9.3e-312 1072.8 677 100.0
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 1.3e-240 836.6 685 80.9
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.8e-234 816.2 672 82.0
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 1.5e-223 780.0 662 80.8
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 3.6e-214 748.8 676 77.1
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 5.2e-213 745.0 676 75.7
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.1e-207 727.2 577 80.2
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 7.3e-207 724.5 674 76.3
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.2e-204 717.2 691 72.1
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 2.0e-204 716.5 679 73.6
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 2.6e-204 716.1 693 65.4
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 2.6e-204 716.1 671 73.8
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 2.2e-203 713.0 668 71.0
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 2.2e-203 713.0 671 73.3
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 1.1e-202 710.7 685 70.4
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 5.4e-202 708.4 655 72.5
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 9.2e-202 707.6 672 75.4
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 4.6e-201 705.3 678 71.1
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 1.7e-200 703.4 673 66.6
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 6.6e-200 701.4 683 73.9
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.1e-199 700.7 646 75.1
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 4.3e-199 698.7 666 73.3
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.2e-198 697.2 676 74.4
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 2.1e-198 696.4 674 74.3
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 6.2e-198 694.9 647 69.7
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 8.1e-198 694.5 618 78.5
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 8.1e-198 694.5 675 69.3
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.4e-197 693.7 651 75.6
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 1.8e-197 693.3 665 74.9
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.2e-197 691.8 674 69.4
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 1.5e-196 690.3 677 70.8
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.0e-196 689.9 674 73.1
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 2.6e-196 689.5 674 73.1
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 2.6e-196 689.5 649 75.0
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 2.6e-196 689.5 653 71.8
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 3.4e-196 689.1 678 69.8
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.4e-196 689.1 674 66.9
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 3.4e-196 689.1 661 73.4
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 4.4e-196 688.7 649 75.2
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 4.4e-196 688.7 669 73.5
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 9.9e-196 687.6 665 70.2
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 1.3e-195 687.2 685 68.8
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 3.7e-195 685.6 663 70.0
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 1.1e-194 684.1 709 71.1
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.9e-194 683.3 660 74.1
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.4e-194 682.9 674 72.7
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 3.2e-194 682.6 674 69.0
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 3.2e-194 682.6 666 68.6
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 7.1e-194 681.4 644 73.0
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 1.6e-193 680.2 678 69.2
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 2.7e-193 679.5 662 69.9
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 7.8e-193 677.9 652 74.4
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 7.8e-193 677.9 671 69.2
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 7.8e-193 677.9 664 73.9
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.9e-191 673.3 672 71.1
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 7.3e-191 671.4 675 69.0
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 7.3e-191 671.4 683 67.5
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 1.6e-190 670.2 670 68.7
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-190 670.2 670 68.5
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 1.6e-190 670.2 670 68.4
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.6e-190 670.2 670 68.5
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 2.1e-190 669.8 670 68.5
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 2.8e-190 669.5 672 71.3
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 4.7e-190 668.7 676 68.2
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 6.2e-190 668.3 670 68.4
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.1e-189 667.5 677 67.7
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 1.4e-189 667.2 717 64.7
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 2.4e-189 666.4 678 66.8
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 2.4e-189 666.4 672 68.2
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 5.2e-189 665.2 682 66.7
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 1.2e-188 664.1 666 69.1
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.2e-188 664.1 690 71.9
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 1.2e-188 664.1 579 72.5
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.5e-188 663.7 680 66.8
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.6e-188 662.9 684 67.0
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 7.6e-188 661.4 666 71.6
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 9.9e-188 661.0 669 68.0
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 2.2e-187 659.8 647 74.2
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 2.2e-187 659.8 660 70.0
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 3.8e-187 659.1 666 71.0
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.4e-186 657.1 664 67.9
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 1.4e-186 657.1 683 64.6
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 5.4e-186 655.2 668 66.9
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 5.4e-186 655.2 671 66.9
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 2.1e-185 653.3 671 66.6
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.3e-184 650.6 657 67.7
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 1.7e-184 650.2 654 67.4
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 2.3e-184 649.8 647 71.4
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 3.0e-184 649.4 690 69.7
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 1.5e-183 647.1 662 70.7
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 2.5e-183 646.4 671 69.3
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 3.3e-183 646.0 669 67.6
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 9.6e-183 644.4 654 68.5
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 1.2e-182 644.0 666 70.1
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.6e-182 643.7 672 69.3
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 2.1e-182 643.3 670 67.3
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 6.2e-182 641.7 644 66.3
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 4.4e-180 635.6 557 75.8
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 5.8e-180 635.2 669 58.1
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 4.2e-178 629.0 646 60.1
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.5e-175 620.5 679 60.8
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 4.3e-175 619.0 608 74.0
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 2.1e-174 616.7 617 69.5
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 3.4e-172 609.4 650 64.6
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.9e-170 603.6 665 66.3
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 7.1e-170 601.7 659 62.7
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 5.1e-168 595.5 677 66.2
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 9.9e-164 581.3 579 71.0
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 3.5e-161 572.8 673 60.5
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 2.9e-155 553.1 532 78.9
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 4.9e-155 552.4 662 66.8
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 2.9e-147 526.6 613 61.3
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 3.2e-146 523.1 519 71.7
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 1.8e-144 517.3 686 52.6
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.4e-141 507.7 718 60.3
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 6.1e-137 492.3 628 53.8
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 2.6e-135 486.9 517 69.2
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 1.4e-133 481.1 629 53.1
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 7.0e-133 478.8 511 68.3
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 7.2e-130 468.8 506 67.6
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 4.1e-125 453.0 517 60.3
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.2e-123 447.2 618 50.6
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.1e-106 391.7 510 54.9
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 3.0e-104 383.6 298 68.8
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 5.4e-101 372.9 514 43.0
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 9.2e-101 372.1 258 72.5
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 6.6e-99 365.9 287 66.2
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 5.6e-98 362.8 343 66.5
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.3e-94 351.7 475 62.1
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 5.4e-85 319.7 217 85.7
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 2.1e-84 317.8 476 55.3
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.2e-71 275.4 302 51.7
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 1.1e-69 268.9 285 54.7
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.2e-68 265.4 285 80.7
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 2.3e-67 261.2 174 74.1
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 1.3e-65 255.4 217 81.1
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.3e-65 255.4 316 66.8
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 8.1e-65 252.7 250 52.4
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 7.6e-63 246.1 301 48.8
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 6.9e-56 223.0 293 44.4
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 3.3e-50 204.1 138 73.2
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 5.6e-50 203.4 298 44.6
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.2e-46 191.4 232 46.1
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 8.4e-46 189.5 288 71.9
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 1.9e-45 188.3 111 82.0
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 3.0e-43 181.0 111 79.3
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 1.0e-38 166.0 87 86.2
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 6.5e-38 163.3 167 55.7
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 3.9e-35 154.1 180 51.7
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-34 152.1 322 50.6
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.7e-28 131.3 98 69.4
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.1e-28 130.2 95 70.5
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.0e-27 127.9 98 69.4
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 3.9e-27 127.5 130 46.9
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.1e-26 125.9 107 61.7
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 9.1e-24 116.3 529 30.2
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 1.5e-18 99.0 174 39.1
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 2.0e-18 98.6 560 28.2
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 5.9e-15 87.0 69 59.4
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.0e-14 86.3 68 67.6
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 8.5e-14 83.2 174 31.6
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 2.5e-13 81.6 119 44.5
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 3.2e-13 81.3 68 66.2
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 5.5e-13 80.5 157 37.6
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 9.4e-13 79.7 157 33.1
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 2.7e-12 78.2 68 55.9
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 8.0e-12 76.6 67 55.2
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 8.0e-12 76.6 54 70.4
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 2.0e-10 72.0 63 55.6
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 7.4e-10 70.1 54 59.3
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 1.8e-08 65.5 73 47.9
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 2.6e-07 61.6 68 48.5
BolC2t09162H Brassica oleracea HOM05D003766 ORTHO05D004607 4.5e-07 60.8 102 41.2
Oeu049536.1 Olea europaea HOM05D003766 ORTHO05D004607 5.9e-07 60.5 46 58.7
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 1.7e-06 58.9 59 47.5
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 3.8e-06 57.8 49 53.1


User provided reference genes

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