Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g078210 Amaranthus hybridus HOM05D003779 ORTHO05D002678 0.0e+00 1885.5 1038 100.0
Ah.14g078430 Amaranthus hybridus HOM05D003779 ORTHO05D002678 0.0e+00 1126.3 1345 56.9
EL10Ac8g18849 Beta vulgaris HOM05D003779 ORTHO05D002678 1.5e-232 810.4 793 61.3
AUR62039744 Chenopodium quinoa HOM05D003779 ORTHO05D002678 4.2e-230 802.4 740 63.0
AUR62043250 Chenopodium quinoa HOM05D003779 ORTHO05D002678 4.0e-212 742.7 1367 41.9
CiPaw.15G174200 Carya illinoinensis HOM05D003779 ORTHO05D002678 1.0e-127 462.2 744 44.9
QL02p092676 Quercus lobata HOM05D003779 ORTHO05D002678 2.9e-122 444.1 750 42.8
Manes.14G111700 Manihot esculenta HOM05D003779 ORTHO05D002678 1.9e-121 441.4 733 42.8
Prupe.7G260100 Prunus persica HOM05D003779 ORTHO05D002678 1.1e-118 432.2 759 41.0
CANSAT11G0231 Cannabis sativa HOM05D003779 ORTHO05D002678 1.5e-118 431.8 778 41.4
Ciclev10007258m.g Citrus clementina HOM05D003779 ORTHO05D002678 3.7e-117 427.2 777 42.6
Thecc.09G033700 Theobroma cacao HOM05D003779 ORTHO05D002678 2.4e-116 424.5 805 40.9
TWI63G1714 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 9.1e-116 422.5 744 41.0
Dinv42884 Davidia involucrata HOM05D003779 ORTHO05D002678 5.9e-115 419.9 759 42.8
Atru.chr7.134 Acer truncatum HOM05D003779 ORTHO05D002678 1.4e-113 415.2 766 43.1
FAN26G3236 Fragaria x ananassa HOM05D003779 ORTHO05D002678 9.4e-113 412.5 749 40.9
RcHm_v2.0_Chr2g0085981 Rosa chinensis HOM05D003779 ORTHO05D002678 1.4e-111 408.7 746 40.6
FvH4_1g01180 Fragaria vesca HOM05D003779 ORTHO05D002678 2.3e-111 407.9 748 40.6
FAN19G1766 Fragaria x ananassa HOM05D003779 ORTHO05D002678 2.3e-111 407.9 748 40.6
Cfa020847 Carpinus fangiana HOM05D003779 ORTHO05D002678 3.9e-111 407.1 797 40.0
FAN28G2365 Fragaria x ananassa HOM05D003779 ORTHO05D002678 6.7e-111 406.4 748 40.5
COL.COLO4_18776 Corchorus olitorius HOM05D003779 ORTHO05D002678 3.3e-110 404.1 798 40.6
Dinv41398 Davidia involucrata HOM05D003779 ORTHO05D002678 7.4e-110 402.9 750 41.7
Cpa.g.sc46.127 Carica papaya HOM05D003779 ORTHO05D002678 1.2e-107 395.6 744 43.3
Gorai.001G031400 Gossypium raimondii HOM05D003779 ORTHO05D002678 2.0e-107 394.8 763 40.5
TWI34G0110 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 2.9e-106 391.0 744 39.1
Gohir.A07G026300 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.1e-105 389.0 761 39.8
Duzib168G2294 Durio zibethinus HOM05D003779 ORTHO05D002678 1.9e-105 388.3 746 40.9
Gohir.D07G030200 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.9e-105 388.3 762 39.6
Actinidia04285 Actinidia chinensis HOM05D003779 ORTHO05D002678 3.2e-105 387.5 749 40.3
Lj6g0022686 Lotus japonicus HOM05D003779 ORTHO05D002678 3.6e-104 384.0 751 37.8
Haze_19235 Corylus avellana HOM05D003779 ORTHO05D002678 4.0e-103 380.6 891 36.3
Potri.018G110100 Populus trichocarpa HOM05D003779 ORTHO05D002678 3.3e-102 377.5 805 36.6
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 7.0e-100 369.8 738 38.8
Duzib187G1590 Durio zibethinus HOM05D003779 ORTHO05D002678 2.0e-99 368.2 768 38.9
Gohir.A13G184900 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.7e-98 365.2 722 39.8
DCAR_019379 Daucus carota HOM05D003779 ORTHO05D002678 8.0e-96 356.3 748 39.0
Glyma.15G205600 Glycine max HOM05D003779 ORTHO05D002678 8.0e-96 356.3 748 36.4
Sc08g0004970 Simmondsia chinensis HOM05D003779 ORTHO05D002678 6.8e-95 353.2 562 43.6
VMungo1309G0106 Vigna mungo HOM05D003779 ORTHO05D002678 1.5e-94 352.1 762 35.4
Phvul.009G194000 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 5.7e-94 350.1 730 36.8
Sabra06G0142300 Salix brachista HOM05D003779 ORTHO05D002678 1.3e-93 349.0 821 36.3
Potri.006G187400 Populus trichocarpa HOM05D003779 ORTHO05D002678 6.3e-93 346.7 750 37.5
arahy.Tifrunner.gnm1.ann1.MXR4WM Arachis hypogaea HOM05D003779 ORTHO05D002678 1.1e-92 345.9 728 37.5
ClCG06G012240 Citrullus lanatus HOM05D003779 ORTHO05D002678 2.4e-92 344.7 767 37.3
Gorai.013G217400 Gossypium raimondii HOM05D003779 ORTHO05D002678 9.1e-92 342.8 727 39.2
Manes.06G037900 Manihot esculenta HOM05D003779 ORTHO05D002678 9.1e-92 342.8 770 37.0
MELO3C010242.2 Cucumis melo HOM05D003779 ORTHO05D002678 3.5e-91 340.9 839 35.6
Medtr2g450210 Medicago truncatula HOM05D003779 ORTHO05D002678 3.5e-91 340.9 759 36.2
CSS0008137 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 2.9e-90 337.8 758 39.6
CsaV3_1G028740 Cucumis sativus L. HOM05D003779 ORTHO05D002678 5.0e-90 337.0 771 37.2
arahy.Tifrunner.gnm1.ann1.Y7PKX5 Arachis hypogaea HOM05D003779 ORTHO05D002678 3.2e-89 334.3 725 36.8
Lj9C714G7 Lonicera japonica HOM05D003779 ORTHO05D002678 5.5e-89 333.6 766 38.8
Sabra06G0143300 Salix brachista HOM05D003779 ORTHO05D002678 2.1e-88 331.6 830 35.1
Sabra18G0093100 Salix brachista HOM05D003779 ORTHO05D002678 1.5e-86 325.5 837 33.2
Actinidia23546 Actinidia chinensis HOM05D003779 ORTHO05D002678 5.4e-84 317.0 793 37.2
Sed0010991 Sechium edule HOM05D003779 ORTHO05D002678 1.2e-83 315.8 771 35.1
TPR.G35880 Trifolium pratense HOM05D003779 ORTHO05D002678 2.9e-82 311.2 756 35.2
Lalb_Chr13g0300951 Lupinus albus HOM05D003779 ORTHO05D002678 1.9e-81 308.5 764 34.7
Rhsim01G0036200 Rhododendron simsii HOM05D003779 ORTHO05D002678 1.9e-81 308.5 782 37.0
Nn8g39802 Nelumbo nucifera HOM05D003779 ORTHO05D002678 9.5e-81 306.2 773 36.4
Peaxi162Scf00347g00821 Petunia axillaris HOM05D003779 ORTHO05D002678 1.8e-79 302.0 754 36.3
Sed0025790 Sechium edule HOM05D003779 ORTHO05D002678 4.0e-79 300.8 728 35.3
Lalb_Chr08g0234021 Lupinus albus HOM05D003779 ORTHO05D002678 3.4e-78 297.7 763 34.5
TAR625G1002 Trochodendron aralioides HOM05D003779 ORTHO05D002678 9.8e-78 296.2 786 36.0
Ca_14533_v3 Cicer arietinum L. HOM05D003779 ORTHO05D002678 1.7e-77 295.4 754 35.1
Lalb_Chr08g0233951 Lupinus albus HOM05D003779 ORTHO05D002678 2.9e-77 294.7 764 34.4
MD02G1009900 Malus domestica HOM05D003779 ORTHO05D002678 4.9e-77 293.9 798 34.1
Psat1g022120 Pisum sativum HOM05D003779 ORTHO05D002678 6.4e-77 293.5 789 33.1
Glyma.09G097600 Glycine max HOM05D003779 ORTHO05D002678 8.3e-77 293.1 742 34.0
Rhsim01G0045400 Rhododendron simsii HOM05D003779 ORTHO05D002678 1.1e-76 292.7 837 34.6
CSS0041477 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 1.0e-74 286.2 712 37.6
PGR102G2779 Punica granatum HOM05D003779 ORTHO05D002678 1.7e-74 285.4 795 36.6
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 1.4e-71 275.8 773 34.8
CiPaw.16G114900 Carya illinoinensis HOM05D003779 ORTHO05D002678 4.0e-71 274.2 567 37.2
Gohir.D13G191400 Gossypium hirsutum HOM05D003779 ORTHO05D002678 3.4e-70 271.2 546 39.7
Nitab4.5_0001201g0070 Nicotiana tabacum HOM05D003779 ORTHO05D002678 7.5e-70 270.0 744 33.7
Oeu050477.1 Olea europaea HOM05D003779 ORTHO05D002678 2.2e-69 268.5 552 38.8
Eucgr.C00363 Eucalyptus grandis HOM05D003779 ORTHO05D002678 3.7e-69 267.7 791 34.5
VMungo1215G0704 Vigna mungo HOM05D003779 ORTHO05D002678 5.4e-68 263.8 741 32.7
CSS0005827 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 2.7e-67 261.5 582 37.6
Sopen07g001470 Solanum pennellii HOM05D003779 ORTHO05D002678 2.3e-66 258.5 745 34.4
vmacro06092 Vaccinium macrocarpon HOM05D003779 ORTHO05D002678 2.5e-65 255.0 775 35.5
CAN.G1116.7 Capsicum annuum HOM05D003779 ORTHO05D002678 4.9e-61 240.7 749 33.4
Gohir.A05G051500 Gossypium hirsutum HOM05D003779 ORTHO05D002678 5.1e-58 230.7 560 34.5
DCAR_020882 Daucus carota HOM05D003779 ORTHO05D002678 2.5e-57 228.4 775 32.5
Nitab4.5_0008534g0010 Nicotiana tabacum HOM05D003779 ORTHO05D002678 2.5e-57 228.4 750 32.7
Gorai.009G054800 Gossypium raimondii HOM05D003779 ORTHO05D002678 5.6e-57 227.3 545 34.5
Gohir.D05G053000 Gossypium hirsutum HOM05D003779 ORTHO05D002678 2.1e-56 225.3 545 34.3
Solyc07g005320.3 Solanum lycopersicum HOM05D003779 ORTHO05D002678 1.4e-55 222.6 742 32.3
A10p16130 Brassica napus HOM05D003779 ORTHO05D002678 1.8e-55 222.2 656 33.5
Sp6g19720 Schrenkiella parvula HOM05D003779 ORTHO05D002678 5.2e-55 220.7 828 31.5
PSO170G5719 Papaver somniferum HOM05D003779 ORTHO05D002678 6.8e-55 220.3 765 31.8
AL8G34140 Arabidopsis lyrata HOM05D003779 ORTHO05D002678 2.0e-54 218.8 653 34.2
TAR636G1028 Trochodendron aralioides HOM05D003779 ORTHO05D002678 2.6e-54 218.4 783 32.6
Aqoxy7G03464 Aquilegia oxysepala HOM05D003779 ORTHO05D002678 3.4e-54 218.0 796 31.2
Thhalv10012479m.g Eutrema salsugineum HOM05D003779 ORTHO05D002678 4.4e-54 217.6 802 31.7
BraA10t43616Z Brassica rapa HOM05D003779 ORTHO05D002678 5.8e-54 217.2 656 33.2
ECA234G1613 Erigeron canadensis HOM05D003779 ORTHO05D002678 9.9e-54 216.5 777 32.0
Phvul.003G157600 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 1.7e-53 215.7 729 29.1
Dinv43216 Davidia involucrata HOM05D003779 ORTHO05D002678 2.9e-53 214.9 404 39.6
C09p49960 Brassica napus HOM05D003779 ORTHO05D002678 9.2e-52 209.9 656 32.5
AT5G58040 Arabidopsis thaliana HOM05D003779 ORTHO05D002678 2.7e-51 208.4 649 33.9
BcaC04g19912 Brassica carinata HOM05D003779 ORTHO05D002678 2.3e-50 205.3 743 30.6
BolC9t57849H Brassica oleracea HOM05D003779 ORTHO05D002678 2.3e-50 205.3 746 30.8
PSO017G3118 Papaver somniferum HOM05D003779 ORTHO05D002678 6.6e-50 203.8 771 31.6
BcaB08g36155 Brassica carinata HOM05D003779 ORTHO05D002678 8.6e-50 203.4 748 30.7
Carub.0008s1859 Capsella rubella HOM05D003779 ORTHO05D002678 9.6e-49 199.9 662 33.7
Aa31LG3G13870 Aethionema arabicum HOM05D003779 ORTHO05D002678 5.2e-47 194.1 757 30.4
CDE05G1362 Ceratophyllum demersum HOM05D003779 ORTHO05D002678 9.9e-46 189.9 808 30.0
SalBow1G6151 Salvia bowleyana HOM05D003779 ORTHO05D002678 9.9e-46 189.9 762 31.1
MBI15_g10629_MAGBIO Magnolia biondii HOM05D003779 ORTHO05D002678 1.3e-45 189.5 764 30.4
CSS0034461 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 3.8e-45 188.0 466 35.6
Zm00001eb055800 Zea mays HOM05D003779 ORTHO05D002678 4.9e-45 187.6 758 30.7
CARHR271850 Cardamine hirsuta HOM05D003779 ORTHO05D002678 5.1e-42 177.6 761 30.0
THA.LOC104813541 Tarenaya hassleriana HOM05D003779 ORTHO05D002678 1.3e-40 172.9 660 31.1
A03p12430 Brassica napus HOM05D003779 ORTHO05D002678 2.8e-40 171.8 649 32.4
SalBow1G3877 Salvia bowleyana HOM05D003779 ORTHO05D002678 1.8e-39 169.1 762 30.8
Oeu026546.1 Olea europaea HOM05D003779 ORTHO05D002678 4.0e-39 167.9 350 40.0
Migut.J01330 Erythranthe guttata HOM05D003779 ORTHO05D002678 6.4e-37 160.6 745 30.3
C03p14630 Brassica napus HOM05D003779 ORTHO05D002678 7.1e-36 157.1 650 30.9
BcaB01g04473 Brassica carinata HOM05D003779 ORTHO05D002678 3.3e-33 148.3 785 29.3
SHI02627 Sapria himalayana HOM05D003779 ORTHO05D002678 3.3e-33 148.3 748 29.5
ATR0739G197 Amborella trichopoda HOM05D003779 ORTHO05D002678 6.2e-32 144.1 775 29.9
Lsat_1_v5_gn_5_91481 Lactuca sativa HOM05D003779 ORTHO05D002678 3.2e-28 131.7 696 28.2
CSS0012306 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 2.1e-27 129.0 187 49.7
Actinidia38340 Actinidia chinensis HOM05D003779 ORTHO05D007251 1.3e-26 126.3 161 54.0
unitig_0.g2698 Utricularia gibba HOM05D003779 ORTHO05D002678 8.7e-26 123.6 633 29.5
Os03g0725100 Oryza sativa ssp. japonica HOM05D003779 ORTHO05D002678 5.6e-25 120.9 703 26.3
SGA_v2.0_scaffold206G41814 Striga asiatica HOM05D003779 ORTHO05D002678 4.5e-22 111.3 467 30.0
THA.LOC104817824 Tarenaya hassleriana HOM05D003779 ORTHO05D002678 4.5e-22 111.3 710 26.9
BraA03t10557Z Brassica rapa HOM05D003779 ORTHO05D002678 5.8e-22 110.9 615 29.8
BolC3t13903H Brassica oleracea HOM05D003779 ORTHO05D002678 1.1e-20 106.7 572 28.5
Zm00001eb215820 Zea mays HOM05D003779 ORTHO05D002678 1.4e-20 106.3 770 27.8
Oeu026545.1 Olea europaea HOM05D003779 ORTHO05D002678 1.2e-19 103.2 142 49.3
HanXRQChr10g0314671 Helianthus annuus HOM05D003779 ORTHO05D002678 3.9e-18 98.2 296 33.8
HanXRQChr12g0357201 Helianthus annuus HOM05D003779 ORTHO05D002678 2.5e-17 95.5 711 24.8
GSVIVG01023597001 Vitis vinifera HOM05D003779 ORTHO05D002678 2.5e-17 95.5 225 35.6
HPP92_020551 Vanilla planifolia HOM05D003779 ORTHO05D002678 4.3e-17 94.7 768 26.4
BcaC09g49900 Brassica carinata HOM05D003779 ORTHO05D002678 2.2e-13 82.4 203 37.4
Dinv17810 Davidia involucrata HOM05D003779 ORTHO05D002678 1.1e-12 80.1 664 26.1
SGA_v2.0_scaffold387G50508 Striga asiatica HOM05D003779 ORTHO05D002678 5.5e-12 77.8 458 28.8
PGSC0003DMG400003182 Solanum tuberosum HOM05D003779 ORTHO05D002678 2.3e-10 72.4 114 42.1
vmacro05800 Vaccinium macrocarpon HOM05D003779 ORTHO05D002678 5.1e-10 71.2 240 32.5
Hma1.2p1_0222F.1_g093310 Hydrangea macrophylla HOM05D003779 ORTHO05D002678 1.6e-08 66.2 96 41.7
Hma1.2p1_2658F.1_g326355 Hydrangea macrophylla HOM05D003779 ORTHO05D002678 1.6e-08 66.2 96 41.7
Cfa003918 Carpinus fangiana HOM05D008391 ORTHO05D009743 5.3e-07 61.2 105 41.9


User provided reference genes

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