Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 8.9e-79 297.0 161 100.0
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 9.0e-39 164.1 235 47.2
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 7.1e-36 154.5 230 47.0
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.5e-33 146.0 234 44.4
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 9.7e-33 144.1 234 44.4
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 2.4e-31 139.4 238 44.5
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 6.1e-27 124.8 174 47.7
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 5.7e-25 118.2 217 38.7
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 9.7e-25 117.5 212 38.7
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 1.3e-24 117.1 217 40.1
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 4.8e-24 115.2 181 44.2
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 8.2e-24 114.4 217 39.6
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 1.8e-23 113.2 207 41.1
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 1.8e-23 113.2 210 40.5
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 2.4e-23 112.8 214 37.4
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 6.9e-23 111.3 221 38.0
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 6.9e-23 111.3 224 39.7
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 9.1e-23 110.9 218 38.1
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 1.5e-22 110.2 235 39.6
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 3.4e-22 109.0 185 40.5
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 3.4e-22 109.0 225 39.6
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 5.9e-22 108.2 211 38.4
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 5.9e-22 108.2 211 39.3
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 7.7e-22 107.8 216 38.4
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.0e-21 107.5 221 38.0
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.3e-21 107.1 221 37.1
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 1.7e-21 106.7 225 36.4
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.7e-21 106.7 217 39.2
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 1.7e-21 106.7 225 39.1
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.7e-21 106.7 225 37.8
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 2.2e-21 106.3 205 37.6
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 2.2e-21 106.3 205 37.6
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 2.2e-21 106.3 205 37.6
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 2.9e-21 105.9 226 38.9
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 2.9e-21 105.9 205 40.0
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 3.8e-21 105.5 200 39.5
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 6.5e-21 104.8 205 37.6
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 6.5e-21 104.8 225 37.3
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 6.5e-21 104.8 226 35.4
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 8.5e-21 104.4 207 37.7
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 1.1e-20 104.0 225 37.3
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.4e-20 103.6 220 37.7
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 1.4e-20 103.6 223 36.3
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.9e-20 103.2 215 36.7
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.9e-20 103.2 226 38.1
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 2.5e-20 102.8 225 39.1
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 2.5e-20 102.8 224 36.2
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.5e-20 102.8 225 36.4
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 2.5e-20 102.8 255 35.3
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 3.2e-20 102.4 215 36.7
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 3.2e-20 102.4 217 36.4
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 5.5e-20 101.7 211 36.0
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 5.5e-20 101.7 217 37.3
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 9.4e-20 100.9 218 37.6
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 1.2e-19 100.5 205 37.1
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 1.6e-19 100.1 199 38.7
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 1.6e-19 100.1 222 36.9
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.6e-19 100.1 208 37.0
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.1e-19 99.8 224 36.2
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.1e-19 99.8 233 34.3
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 2.7e-19 99.4 218 37.2
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 3.6e-19 99.0 212 35.8
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 3.6e-19 99.0 219 37.4
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 3.6e-19 99.0 220 36.8
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 7.9e-19 97.8 219 36.1
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 7.9e-19 97.8 216 36.6
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.0e-18 97.4 217 35.0
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 1.4e-18 97.1 195 37.4
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.4e-18 97.1 216 35.2
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.4e-18 97.1 216 35.2
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.4e-18 97.1 191 39.8
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.8e-18 96.7 217 36.9
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.8e-18 96.7 219 36.5
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 2.3e-18 96.3 218 34.9
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 3.0e-18 95.9 207 36.2
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 3.9e-18 95.5 215 35.3
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 3.9e-18 95.5 206 35.0
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 5.1e-18 95.1 224 35.7
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 5.1e-18 95.1 224 35.7
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 5.1e-18 95.1 224 35.7
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 5.1e-18 95.1 233 35.6
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 8.8e-18 94.4 220 33.2
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 8.8e-18 94.4 247 32.0
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 8.8e-18 94.4 207 36.7
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 8.8e-18 94.4 207 36.7
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 1.1e-17 94.0 212 35.4
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.1e-17 94.0 223 35.0
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 1.5e-17 93.6 219 35.2
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.5e-17 93.6 209 35.9
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 1.5e-17 93.6 231 33.3
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 2.6e-17 92.8 247 32.8
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 3.3e-17 92.4 201 36.8
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 4.4e-17 92.0 211 35.1
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 7.4e-17 91.3 224 34.4
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 7.4e-17 91.3 224 34.4
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 1.7e-16 90.1 197 37.1
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 2.2e-16 89.7 197 36.0
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 2.8e-16 89.4 257 34.2
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 4.8e-16 88.6 249 31.3
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.1e-15 87.4 207 34.3
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 1.8e-15 86.7 203 36.0
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 9.1e-15 84.3 200 33.0
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.2e-14 84.0 219 32.0
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 1.2e-14 84.0 188 37.8
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 1.5e-14 83.6 198 34.8
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.6e-14 82.8 58 65.5
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 7.7e-14 81.3 209 34.9
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.7e-13 80.1 138 40.6
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.7e-13 80.1 67 62.7
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.7e-13 80.1 67 62.7
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.7e-13 80.1 155 35.5
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 1.1e-12 77.4 85 51.8
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.4e-12 77.0 55 78.2
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 1.4e-12 77.0 60 63.3
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 2.5e-12 76.3 163 38.7
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 3.2e-12 75.9 57 64.9
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 4.2e-12 75.5 60 61.7
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 4.2e-12 75.5 196 30.6
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 5.5e-12 75.1 221 32.1
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 9.4e-12 74.3 46 71.7
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 9.4e-12 74.3 49 67.3
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 1.6e-11 73.6 163 36.8
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 3.6e-11 72.4 58 62.1
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 2.3e-10 69.7 196 31.1
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 5.2e-10 68.6 200 30.0
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 1.5e-09 67.0 50 74.0
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 7.4e-09 64.7 42 64.3
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 2.2e-08 63.2 55 50.9
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 1.4e-07 60.5 47 61.7
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 2.4e-07 59.7 55 63.6
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 5.3e-07 58.5 117 35.0
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 9.1e-07 57.8 50 66.0
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.6e-06 57.0 104 37.5
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 2.0e-06 56.6 105 38.1
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 2.0e-06 56.6 105 38.1
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 2.0e-06 56.6 52 63.5


User provided reference genes

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