Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.5e-89 332.8 169 100.0
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.4e-82 309.7 167 91.6
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 1.0e-80 303.5 167 88.0
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 2.2e-80 302.4 169 87.0
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.9e-80 302.0 169 88.2
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 5.0e-80 301.2 169 87.0
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 5.0e-80 301.2 169 87.0
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.0e-80 301.2 169 86.4
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 5.0e-80 301.2 169 86.4
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.1e-79 300.1 169 85.8
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.1e-79 300.1 169 85.8
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-79 299.7 166 88.0
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 1.4e-79 299.7 167 86.2
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.9e-79 299.3 169 86.4
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.9e-79 299.3 169 86.4
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 3.2e-79 298.5 166 89.2
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.2e-79 298.5 166 89.2
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.2e-79 298.5 166 89.2
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 3.2e-79 298.5 169 85.8
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 3.2e-79 298.5 166 89.2
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 4.2e-79 298.1 168 86.9
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.5e-79 297.7 166 89.2
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 7.2e-79 297.4 169 87.0
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.2e-78 296.6 169 85.8
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 85.8
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 2.7e-78 295.4 168 85.7
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 2.7e-78 295.4 168 86.9
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.6e-78 295.0 169 85.8
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 3.6e-78 295.0 169 84.0
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 4.6e-78 294.7 166 86.7
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 85.2
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 84.0
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.4e-77 293.1 169 84.6
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.4e-77 293.1 167 83.8
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.4e-77 293.1 167 86.2
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.8e-77 292.7 169 85.8
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 2.3e-77 292.4 166 86.1
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 3.9e-77 291.6 169 83.4
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.9e-77 291.6 168 85.1
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 5.1e-77 291.2 168 85.1
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.1e-77 291.2 168 85.1
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 6.7e-77 290.8 169 84.0
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 8.8e-77 290.4 169 84.6
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.1e-76 290.0 169 84.6
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.5e-76 289.7 169 84.6
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 5.7e-76 287.7 169 83.4
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 5.7e-76 287.7 207 74.4
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 9.7e-76 287.0 169 82.2
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.7e-75 286.2 183 80.3
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.2e-75 285.8 183 80.3
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.2e-75 285.8 183 80.3
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 2.2e-75 285.8 169 82.8
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 2.2e-75 285.8 186 78.0
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 2.8e-75 285.4 169 82.8
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 3.7e-75 285.0 169 82.8
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 6.3e-75 284.3 169 82.2
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 8.2e-75 283.9 169 82.2
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.4e-74 283.1 169 81.7
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.8e-74 282.7 169 80.5
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 1.8e-74 282.7 169 80.5
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 2.4e-74 282.3 169 81.1
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.4e-74 282.3 169 79.9
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 81.7
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 80.5
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 81.7
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 79.9
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 79.3
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 5.3e-74 281.2 169 80.5
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 6.9e-74 280.8 182 76.9
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 9.1e-74 280.4 169 80.5
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 9.1e-74 280.4 169 82.2
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.2e-73 280.0 169 79.9
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.2e-73 280.0 192 76.0
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.2e-73 280.0 169 83.4
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 2.6e-73 278.9 169 80.5
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 3.4e-73 278.5 169 79.3
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 5.9e-73 277.7 169 80.5
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 7.7e-73 277.3 226 65.5
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.2e-72 275.8 167 79.0
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 2.9e-72 275.4 169 78.1
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.9e-72 275.4 169 78.7
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 5.0e-72 274.6 169 78.7
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 5.0e-72 274.6 167 82.0
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 2.5e-71 272.3 149 88.6
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.5e-71 272.3 149 87.2
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.5e-71 271.2 169 76.9
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 5.5e-71 271.2 149 86.6
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 9.4e-71 270.4 149 86.6
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 9.4e-71 270.4 169 77.5
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 2.7e-70 268.9 197 70.6
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 4.7e-70 268.1 169 75.7
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 6.1e-70 267.7 167 77.8
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.0e-69 266.9 169 79.3
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 1.4e-69 266.5 169 76.9
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.4e-69 266.5 169 75.1
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 1.8e-69 266.2 149 85.9
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.8e-69 266.2 214 66.4
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 3.0e-69 265.4 169 76.3
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 8.8e-69 263.8 167 74.9
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.0e-68 262.7 158 82.3
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.6e-68 262.3 153 83.7
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.6e-68 262.3 143 87.4
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.3e-67 260.0 148 83.8
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.7e-67 259.6 158 81.6
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 2.8e-67 258.8 145 85.5
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 3.1e-66 255.4 147 84.4
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 5.3e-66 254.6 166 75.9
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 7.0e-66 254.2 150 79.3
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 2.0e-65 252.7 177 75.7
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.5e-65 251.9 153 81.0
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.0e-64 250.4 168 76.2
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.7e-64 249.6 167 70.1
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 2.2e-64 249.2 239 58.2
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 7.2e-63 244.2 168 73.2
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.6e-62 243.0 149 77.2
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 5.7e-60 234.6 167 71.9
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-59 233.4 156 77.6
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 6.3e-59 231.1 126 84.9
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 8.2e-59 230.7 149 73.2
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 4.1e-58 228.4 170 71.2
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 2.0e-57 226.1 166 66.9
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 3.5e-57 225.3 124 83.1
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 3.5e-57 225.3 123 87.8
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.2e-56 222.6 152 71.7
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 6.5e-56 221.1 169 70.4
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 9.4e-55 217.2 124 87.9
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 2.7e-54 215.7 166 69.9
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 3.0e-53 212.2 168 64.9
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 4.0e-53 211.8 134 80.6
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 8.8e-53 210.7 157 66.9
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.0e-52 209.5 132 76.5
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 3.3e-52 208.8 191 56.5
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 9.7e-52 207.2 121 86.0
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 9.7e-52 207.2 121 86.0
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-51 206.8 121 86.0
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-51 206.1 121 85.1
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 3.1e-50 202.2 123 82.9
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 5.9e-49 198.0 152 68.4
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 7.7e-49 197.6 124 81.5
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.7e-46 189.1 136 67.6
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 6.1e-46 188.0 141 68.8
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 8.0e-46 187.6 145 71.0
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.0e-40 170.6 109 80.7
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 3.8e-40 168.7 90 85.6
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 1.8e-37 159.8 90 87.8
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.9e-37 157.5 94 88.3
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 6.6e-32 141.4 83 84.3
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 5.2e-29 131.7 104 64.4
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.8e-28 128.3 99 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.3e-27 127.1 94 68.1
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.6e-25 118.6 73 82.2
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 4.6e-25 118.6 100 65.0
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.0e-24 117.5 82 68.3
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.8e-22 109.4 78 64.1
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 8.9e-21 104.4 75 68.0
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-20 104.0 74 67.6
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.0e-18 94.7 64 71.9
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.1e-17 93.2 65 72.3
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.1e-17 93.2 153 39.9
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 2.7e-17 92.8 143 39.9
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 1.6e-14 83.6 49 85.7
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 1.6e-14 83.6 49 85.7
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.2e-13 78.6 44 77.3
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.3e-11 73.9 111 47.7
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 4.9e-11 72.0 177 33.9
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.1e-10 68.2 38 78.9


User provided reference genes

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