Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g073860 Amaranthus hybridus HOM05D002407 ORTHO05D002476 7.5e-216 753.8 454 100.0
Ah.13g073870 Amaranthus hybridus HOM05D002407 ORTHO05D002476 4.1e-137 492.3 457 68.7
AUR62038630 Chenopodium quinoa HOM05D002407 ORTHO05D002476 3.0e-95 353.2 461 57.9
AUR62038105 Chenopodium quinoa HOM05D002407 ORTHO05D002476 3.3e-94 349.7 460 56.5
Hund12142 Selenicereus undatus HOM05D002407 ORTHO05D002476 1.1e-92 344.7 468 53.4
Thecc.04G228600 Theobroma cacao HOM05D002407 ORTHO05D002476 1.8e-52 211.1 485 42.1
Sabra10G0053600 Salix brachista HOM05D002407 ORTHO05D002476 1.7e-50 204.5 461 42.1
Duzib212G0865 Durio zibethinus HOM05D002407 ORTHO05D002476 2.5e-49 200.7 492 39.8
Gohir.A10G117100 Gossypium hirsutum HOM05D002407 ORTHO05D002476 1.0e-47 195.3 462 42.0
CiPaw.01G164400 Carya illinoinensis HOM05D002407 ORTHO05D002476 6.7e-47 192.6 469 43.1
Gohir.D09G217200 Gossypium hirsutum HOM05D002407 ORTHO05D002476 1.5e-46 191.4 473 40.8
Gorai.006G237700 Gossypium raimondii HOM05D002407 ORTHO05D002476 2.5e-46 190.7 476 40.5
QL06p003139 Quercus lobata HOM05D002407 ORTHO05D002476 4.3e-46 189.9 485 40.0
Haze_00920 Corylus avellana HOM05D002407 ORTHO05D002476 5.6e-46 189.5 480 40.4
Gohir.A09G214700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 1.6e-45 188.0 468 40.0
Manes.15G027400 Manihot esculenta HOM05D002407 ORTHO05D002476 1.1e-44 185.3 471 40.1
Potri.008G151200 Populus trichocarpa HOM05D002407 ORTHO05D002476 1.1e-41 175.3 476 38.4
Cc03_g03560 Coffea canephora HOM05D002407 ORTHO05D002476 1.9e-41 174.5 482 38.2
Potri.010G089700 Populus trichocarpa HOM05D002407 ORTHO05D002476 1.6e-40 171.4 470 38.5
Dinv44512 Davidia involucrata HOM05D002407 ORTHO05D002476 2.5e-38 164.1 477 38.2
Sc13g0004300 Simmondsia chinensis HOM05D002407 ORTHO05D002476 4.3e-38 163.3 467 41.5
Gorai.011G169000 Gossypium raimondii HOM05D002407 ORTHO05D002476 9.7e-38 162.2 467 38.5
COL.COLO4_10231 Corchorus olitorius HOM05D002407 ORTHO05D002476 4.8e-37 159.8 496 38.1
Manes.15G026500 Manihot esculenta HOM05D002407 ORTHO05D002476 4.8e-37 159.8 469 37.7
Gohir.D10G151700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 1.1e-36 158.7 467 38.5
MSTRG.4019 Avicennia marina HOM05D002407 ORTHO05D002476 1.4e-36 158.3 467 37.5
Duzib151G0448 Durio zibethinus HOM05D002407 ORTHO05D002476 1.4e-36 158.3 474 37.6
Duzib052G1002 Durio zibethinus HOM05D002407 ORTHO05D002476 2.4e-36 157.5 472 37.9
MSTRG.21848 Avicennia marina HOM05D002407 ORTHO05D002476 3.1e-36 157.1 467 37.7
SalBow2G0563 Salvia bowleyana HOM05D002407 ORTHO05D002476 1.2e-35 155.2 322 43.5
Sed0021914 Sechium edule HOM05D002407 ORTHO05D002476 1.0e-34 152.1 492 39.2
CiPaw.02G096000 Carya illinoinensis HOM05D002407 ORTHO05D002476 8.5e-34 149.1 470 38.1
TWI53G2093 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 8.5e-34 149.1 473 36.8
Cpa.g.sc58.130 Carica papaya HOM05D002407 ORTHO05D002476 1.9e-33 147.9 482 35.5
Sc25g0004400 Simmondsia chinensis HOM05D002407 ORTHO05D002476 7.9e-32 142.5 449 35.4
Oeu041218.1 Olea europaea HOM05D002407 ORTHO05D002476 2.0e-30 137.9 331 43.5
Eucgr.H03537 Eucalyptus grandis HOM05D002407 ORTHO05D002476 9.7e-30 135.6 476 34.7
Sed0008106 Sechium edule HOM05D002407 ORTHO05D002476 9.7e-30 135.6 473 34.5
Ciclev10004136m.g Citrus clementina HOM05D002407 ORTHO05D002476 1.7e-29 134.8 462 38.1
RcHm_v2.0_Chr4g0416621 Rosa chinensis HOM05D002407 ORTHO05D002476 1.7e-29 134.8 536 35.4
Lalb_Chr09g0319791 Lupinus albus HOM05D002407 ORTHO05D002476 3.7e-29 133.7 473 34.7
Sabra08G0115000 Salix brachista HOM05D002407 ORTHO05D002476 6.3e-29 132.9 478 36.0
Dinv38434 Davidia involucrata HOM05D002407 ORTHO05D002476 3.1e-28 130.6 468 35.9
FAN22G1385 Fragaria x ananassa HOM05D002407 ORTHO05D002476 3.1e-28 130.6 523 34.8
Phvul.007G055400 Phaseolus vulgaris HOM05D002407 ORTHO05D002476 2.2e-26 124.4 471 33.3
FAN17G1063 Fragaria x ananassa HOM05D002407 ORTHO05D002476 6.5e-26 122.9 513 34.1
Glyma.10G249300 Glycine max HOM05D002407 ORTHO05D002476 1.9e-25 121.3 478 33.5
Lalb_Chr05g0210931 Lupinus albus HOM05D002407 ORTHO05D002476 2.5e-25 120.9 456 34.2
Lj5g0016334 Lotus japonicus HOM05D002407 ORTHO05D002476 1.2e-24 118.6 476 31.7
TWI73G0052 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 1.2e-24 118.6 469 33.9
AL3G36660 Arabidopsis lyrata HOM05D002407 ORTHO05D002476 2.7e-24 117.5 490 33.1
Prupe.1G011200 Prunus persica HOM05D002407 ORTHO05D002476 7.9e-24 115.9 510 32.7
Nn4g26275 Nelumbo nucifera HOM05D002407 ORTHO05D002476 1.8e-23 114.8 458 32.3
Atru.chr4.2501 Acer truncatum HOM05D002407 ORTHO05D002476 3.0e-23 114.0 465 37.2
arahy.Tifrunner.gnm1.ann1.C339P9 Arachis hypogaea HOM05D002407 ORTHO05D002476 5.1e-23 113.2 475 32.6
FAN12G3852 Fragaria x ananassa HOM05D002407 ORTHO05D002476 6.7e-23 112.8 512 32.2
PGR004G2462 Punica granatum HOM05D002407 ORTHO05D002476 6.7e-23 112.8 468 33.3
Actinidia23483 Actinidia chinensis HOM05D002407 ORTHO05D002476 1.5e-22 111.7 479 32.8
MELO3C014484.2 Cucumis melo HOM05D002407 ORTHO05D002476 2.6e-22 110.9 469 33.7
MSTRG.24745 Avicennia marina HOM05D002407 ORTHO05D002476 4.4e-22 110.2 463 33.3
FvH4_4g15230 Fragaria vesca HOM05D002407 ORTHO05D002476 9.7e-22 109.0 516 31.8
CSS0005054 Camellia sinensis var. sinensis HOM05D002407 ORTHO05D002476 2.8e-21 107.5 500 33.0
Psat6g208200 Pisum sativum HOM05D002407 ORTHO05D002476 2.8e-21 107.5 473 32.6
TPR.G5532 Trifolium pratense HOM05D002407 ORTHO05D002476 4.8e-21 106.7 476 34.2
MD13G1190800 Malus domestica HOM05D002407 ORTHO05D002476 8.2e-21 105.9 504 32.9
Nitab4.5_0000795g0080 Nicotiana tabacum HOM05D002407 ORTHO05D002476 1.8e-20 104.8 338 37.0
CsaV3_6G038190 Cucumis sativus L. HOM05D002407 ORTHO05D002476 3.1e-20 104.0 470 31.5
Glyma.20G144400 Glycine max HOM05D002407 ORTHO05D002476 5.3e-20 103.2 479 32.6
AT3G22380 Arabidopsis thaliana HOM05D002407 ORTHO05D002476 7.0e-20 102.8 484 32.9
VMungo0720G1158 Vigna mungo HOM05D002407 ORTHO05D002476 7.0e-20 102.8 461 33.8
TWI09G0219 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 2.0e-19 101.3 483 31.9
Actinidia08503 Actinidia chinensis HOM05D002407 ORTHO05D002476 2.6e-19 100.9 462 33.1
DCAR_027191 Daucus carota HOM05D002407 ORTHO05D002476 4.5e-19 100.1 457 33.5
MD16G1191200 Malus domestica HOM05D002407 ORTHO05D002476 1.3e-18 98.6 511 32.3
MBI04_g44890_MAGBIO Magnolia biondii HOM05D002407 ORTHO05D002476 1.7e-18 98.2 503 31.4
SGA_v2.0_scaffold39G15271 Striga asiatica HOM05D002407 ORTHO05D002476 6.5e-18 96.3 470 31.9
Nn1g02265 Nelumbo nucifera HOM05D002407 ORTHO05D002476 1.1e-17 95.5 344 34.9
Carub.0003s2254 Capsella rubella HOM05D002407 ORTHO05D002476 2.5e-17 94.4 489 30.5
Migut.N00175 Erythranthe guttata HOM05D002407 ORTHO05D002476 7.2e-17 92.8 450 32.0
unitig_748.g8339 Utricularia gibba HOM05D002407 ORTHO05D002476 7.2e-17 92.8 470 33.2
Aqoxy2G03363 Aquilegia oxysepala HOM05D002407 ORTHO05D002476 1.2e-16 92.0 501 30.9
FAN07G2387 Fragaria x ananassa HOM05D002407 ORTHO05D002476 6.7e-15 86.3 522 30.5
Rhsim02G0022900 Rhododendron simsii HOM05D002407 ORTHO05D002476 8.8e-15 85.9 328 40.2
SGA_v2.0_scaffold257G45729 Striga asiatica HOM05D002407 ORTHO05D002476 4.4e-14 83.6 436 31.9
arahy.Tifrunner.gnm1.ann1.GGU5D9 Arachis hypogaea HOM05D002407 ORTHO05D002476 1.3e-13 82.0 475 33.7
Solyc09g075830.3 Solanum lycopersicum HOM05D002407 ORTHO05D002476 1.3e-13 82.0 480 31.7
Aa31LG8G8910 Aethionema arabicum HOM05D002407 ORTHO05D002476 1.7e-13 81.6 483 31.7
TAR365G0329 Trochodendron aralioides HOM05D002407 ORTHO05D002476 1.7e-13 81.6 477 28.9
Sopen09g030650 Solanum pennellii HOM05D002407 ORTHO05D002476 4.8e-13 80.1 478 31.0
TAR362G1005 Trochodendron aralioides HOM05D002407 ORTHO05D002476 4.8e-13 80.1 485 30.5
Thhalv10019888m.g Eutrema salsugineum HOM05D002407 ORTHO05D002476 1.1e-12 79.0 485 31.1
ClCG06G006080 Citrullus lanatus HOM05D002407 ORTHO05D002476 3.1e-12 77.4 330 33.9
THA.LOC104808535 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 3.1e-12 77.4 495 31.1
Actinidia36974 Actinidia chinensis HOM05D002407 ORTHO05D002476 5.3e-12 76.6 466 29.2
A03p42740 Brassica napus HOM05D002407 ORTHO05D002476 3.5e-11 73.9 279 35.5
BraA03t13421Z Brassica rapa HOM05D002407 ORTHO05D002476 3.5e-11 73.9 279 35.5
Ca_10916_v3 Cicer arietinum L. HOM05D002407 ORTHO05D002476 1.3e-10 72.0 469 29.0
PGSC0003DMG400031808 Solanum tuberosum HOM05D002407 ORTHO05D002476 1.7e-10 71.6 483 30.6
vmacro15329 Vaccinium macrocarpon HOM05D002407 ORTHO05D002476 2.2e-10 71.2 291 34.7
Peaxi162Scf00437g00026 Petunia axillaris HOM05D002407 ORTHO05D002476 3.8e-10 70.5 480 31.7
Sp3g20150 Schrenkiella parvula HOM05D002407 ORTHO05D002476 5.0e-10 70.1 289 34.9
SHI00424 Sapria himalayana HOM05D002407 ORTHO05D002476 1.9e-09 68.2 335 32.2
Actinidia36977 Actinidia chinensis HOM05D002407 ORTHO05D002476 2.7e-08 64.3 468 28.8
Lj6C599T3 Lonicera japonica HOM05D002407 ORTHO05D002476 3.6e-08 63.9 150 34.7
HPP92_024476 Vanilla planifolia HOM05D002407 ORTHO05D002476 4.7e-08 63.5 488 30.3
Actinidia40180 Actinidia chinensis HOM05D002407 ORTHO05D002476 6.1e-08 63.2 345 30.1
HanXRQChr04g0111801 Helianthus annuus HOM05D002407 ORTHO05D002476 1.0e-07 62.4 493 32.7
TAR636G3152 Trochodendron aralioides HOM05D002407 ORTHO05D002476 1.0e-07 62.4 467 29.8
DCAR_027192 Daucus carota HOM05D002407 ORTHO05D002476 1.4e-07 62.0 262 33.2
ECA234G2398 Erigeron canadensis HOM05D002407 ORTHO05D002476 1.4e-07 62.0 505 32.5
BcaB04g19200 Brassica carinata HOM05D002407 ORTHO05D002476 3.0e-07 60.8 492 29.7
PSO832G2586 Papaver somniferum HOM05D002407 ORTHO05D002476 4.0e-07 60.5 519 28.1
Medtr1g104710 Medicago truncatula HOM05D002407 ORTHO05D002476 1.2e-06 58.9 465 31.2
Carub.0007s2714 Capsella rubella HOM05D002407 ORTHO05D002476 1.5e-06 58.5 293 32.8
A01p32710 Brassica napus HOM05D002407 ORTHO05D002476 3.4e-06 57.4 265 33.6
BraA01t03399Z Brassica rapa HOM05D002407 ORTHO05D002476 3.4e-06 57.4 265 33.6
A05p26430 Brassica napus HOM05D002407 ORTHO05D002476 4.4e-06 57.0 265 32.5
BraA05t21516Z Brassica rapa HOM05D002407 ORTHO05D002476 4.4e-06 57.0 265 32.5


User provided reference genes

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