Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g072590 Amaranthus hybridus HOM05D006432 ORTHO05D008257 8.5e-160 567.0 297 100.0
EL10Ac3g04982 Beta vulgaris HOM05D006432 ORTHO05D008257 1.2e-110 403.7 296 74.0
Hund11907 Selenicereus undatus HOM05D006432 ORTHO05D008257 2.6e-100 369.4 303 68.6
AUR62002163 Chenopodium quinoa HOM05D006432 ORTHO05D008257 2.3e-96 356.3 194 89.2
Hma1.2p1_0385F.1_g141240 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 3.0e-96 355.9 242 76.4
Actinidia39914 Actinidia chinensis HOM05D006432 ORTHO05D008257 3.9e-96 355.5 299 69.6
AUR62015546 Chenopodium quinoa HOM05D006432 ORTHO05D008257 3.9e-96 355.5 193 89.6
ClCG05G004210 Citrullus lanatus HOM05D006432 ORTHO05D008257 2.5e-95 352.8 309 66.0
CAN.G220.38 Capsicum annuum HOM05D006432 ORTHO05D008257 4.3e-95 352.1 242 75.6
Sopen09g033230 Solanum pennellii HOM05D006432 ORTHO05D008257 7.3e-95 351.3 233 77.3
GSVIVG01027851001 Vitis vinifera HOM05D006432 ORTHO05D008257 7.3e-95 351.3 242 74.4
Sed0005439 Sechium edule HOM05D006432 ORTHO05D008257 1.6e-94 350.1 229 77.3
Thecc.04G259000 Theobroma cacao HOM05D006432 ORTHO05D008257 2.1e-94 349.7 298 66.8
Solyc09g090330.3 Solanum lycopersicum HOM05D006432 ORTHO05D008257 2.8e-94 349.4 223 79.8
MD16G1221800 Malus domestica HOM05D006432 ORTHO05D008257 4.8e-94 348.6 308 63.6
CsaV3_3G011940 Cucumis sativus L. HOM05D006432 ORTHO05D008257 6.2e-94 348.2 309 65.0
Glyma.20G207100 Glycine max HOM05D006432 ORTHO05D008257 6.2e-94 348.2 244 74.2
Manes.15G043100 Manihot esculenta HOM05D006432 ORTHO05D008257 8.1e-94 347.8 242 75.2
PGSC0003DMG400017164 Solanum tuberosum HOM05D006432 ORTHO05D008257 8.1e-94 347.8 223 79.4
Ca_09849_v3 Cicer arietinum L. HOM05D006432 ORTHO05D008257 1.1e-93 347.4 301 65.8
COL.COLO4_15916 Corchorus olitorius HOM05D006432 ORTHO05D008257 1.8e-93 346.7 297 68.7
Nitab4.5_0000044g0560 Nicotiana tabacum HOM05D006432 ORTHO05D008257 2.4e-93 346.3 223 79.4
Haze_11417 Corylus avellana HOM05D006432 ORTHO05D008257 5.3e-93 345.1 289 67.8
MELO3C006407.2 Cucumis melo HOM05D006432 ORTHO05D008257 5.3e-93 345.1 236 75.4
Gohir.D09G229900 Gossypium hirsutum HOM05D006432 ORTHO05D008257 5.3e-93 345.1 242 75.2
Nitab4.5_0000596g0040 Nicotiana tabacum HOM05D006432 ORTHO05D008257 5.3e-93 345.1 223 79.8
Gohir.A09G228800 Gossypium hirsutum HOM05D006432 ORTHO05D008257 6.9e-93 344.7 242 75.2
Sc13g0005860 Simmondsia chinensis HOM05D006432 ORTHO05D008257 6.9e-93 344.7 300 64.0
Cfa014742 Carpinus fangiana HOM05D006432 ORTHO05D008257 9.0e-93 344.4 289 67.1
VMungo0720G1276 Vigna mungo HOM05D006432 ORTHO05D008257 1.2e-92 344.0 247 73.3
Gorai.006G252600 Gossypium raimondii HOM05D006432 ORTHO05D008257 1.5e-92 343.6 242 74.8
Potri.008G169100 Populus trichocarpa HOM05D006432 ORTHO05D008257 2.0e-92 343.2 243 74.9
Prupe.1G042200 Prunus persica HOM05D006432 ORTHO05D008257 2.0e-92 343.2 289 65.4
Actinidia11356 Actinidia chinensis HOM05D006432 ORTHO05D008257 2.6e-92 342.8 295 64.7
Atru.chr4.2005 Acer truncatum HOM05D006432 ORTHO05D008257 4.5e-92 342.0 245 75.9
MBI07_g31085_MAGBIO Magnolia biondii HOM05D006432 ORTHO05D008257 9.9e-92 340.9 229 75.1
FAN12G0128 Fragaria x ananassa HOM05D006432 ORTHO05D008257 1.7e-91 340.1 193 83.9
Sabra08G0128900 Salix brachista HOM05D006432 ORTHO05D008257 1.7e-91 340.1 243 73.7
PGR031G2997 Punica granatum HOM05D006432 ORTHO05D008257 2.2e-91 339.7 243 72.0
RcHm_v2.0_Chr4g0394281 Rosa chinensis HOM05D006432 ORTHO05D008257 2.2e-91 339.7 193 83.9
FAN22G0893 Fragaria x ananassa HOM05D006432 ORTHO05D008257 2.9e-91 339.3 193 83.4
FAN17G1327 Fragaria x ananassa HOM05D006432 ORTHO05D008257 4.9e-91 338.6 193 83.4
TWI73G0471 Tripterygium wilfordii HOM05D006432 ORTHO05D008257 4.9e-91 338.6 305 62.6
Medtr1g075660 Medicago truncatula HOM05D006432 ORTHO05D008257 6.4e-91 338.2 193 85.0
Dinv27072 Davidia involucrata HOM05D006432 ORTHO05D008257 8.4e-91 337.8 308 65.3
Migut.N00285 Erythranthe guttata HOM05D006432 ORTHO05D008257 8.4e-91 337.8 221 77.4
Zm00001eb114860 Zea mays HOM05D006432 ORTHO05D008257 8.4e-91 337.8 222 78.8
CiPaw.01G181700 Carya illinoinensis HOM05D006432 ORTHO05D008257 1.1e-90 337.4 239 73.2
Duzib052G0458 Durio zibethinus HOM05D006432 ORTHO05D008257 1.1e-90 337.4 205 81.0
QL06p019206 Quercus lobata HOM05D006432 ORTHO05D008257 1.9e-90 336.7 302 65.9
Psat6g122560 Pisum sativum HOM05D006432 ORTHO05D008257 2.4e-90 336.3 288 65.3
Peaxi162Scf00392g00732 Petunia axillaris HOM05D006432 ORTHO05D008257 3.2e-90 335.9 221 76.0
Lalb_Chr21g0312161 Lupinus albus HOM05D006432 ORTHO05D008257 5.4e-90 335.1 193 83.4
Os11g0595200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 5.4e-90 335.1 208 81.2
CSS0006599 Camellia sinensis var. sinensis HOM05D006432 ORTHO05D008257 7.1e-90 334.7 300 63.0
Rhsim02G0041500 Rhododendron simsii HOM05D006432 ORTHO05D008257 9.3e-90 334.3 194 83.5
HanXRQChr14g0434951 Helianthus annuus HOM05D006432 ORTHO05D008257 2.1e-89 333.2 210 76.7
Lsat_1_v5_gn_2_40021 Lactuca sativa HOM05D006432 ORTHO05D008257 2.1e-89 333.2 297 62.3
CANSAT78G0744 Cannabis sativa HOM05D006432 ORTHO05D008257 3.5e-89 332.4 225 76.0
TPR.G10084 Trifolium pratense HOM05D006432 ORTHO05D008257 3.5e-89 332.4 194 83.5
Ciclev10007095m.g Citrus clementina HOM05D006432 ORTHO05D008257 4.6e-89 332.0 303 61.7
Cc03_g05780 Coffea canephora HOM05D006432 ORTHO05D008257 1.3e-88 330.5 223 74.9
Lj5g0003574 Lotus japonicus HOM05D006432 ORTHO05D008257 3.0e-88 329.3 194 83.5
vmacro15458 Vaccinium macrocarpon HOM05D006432 ORTHO05D008257 8.7e-88 327.8 306 61.8
Aqoxy5G00185 Aquilegia oxysepala HOM05D006432 ORTHO05D008257 1.1e-87 327.4 231 72.7
Oeu059409.1 Olea europaea HOM05D006432 ORTHO05D008257 1.1e-87 327.4 288 61.8
Eucgr.H00144 Eucalyptus grandis HOM05D006432 ORTHO05D008257 4.3e-87 325.5 242 70.7
ATR0582G319 Amborella trichopoda HOM05D006432 ORTHO05D008257 5.6e-87 325.1 193 82.9
MSTRG.9882 Avicennia marina HOM05D006432 ORTHO05D008257 7.4e-87 324.7 292 62.3
Aa31LG8G9890 Aethionema arabicum HOM05D006432 ORTHO05D008257 2.8e-86 322.8 223 70.4
AL3G38060 Arabidopsis lyrata HOM05D006432 ORTHO05D008257 3.7e-86 322.4 207 74.9
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 4.8e-86 322.0 244 65.6
CDE04G3487 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 6.2e-86 321.6 246 66.3
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 8.1e-86 321.2 224 71.0
Lalb_Chr06g0169201 Lupinus albus HOM05D006432 ORTHO05D008257 1.1e-85 320.9 194 80.9
Lj3A686T58 Lonicera japonica HOM05D006432 ORTHO05D008257 1.8e-85 320.1 203 76.8
AT3G23400 Arabidopsis thaliana HOM05D006432 ORTHO05D008257 6.9e-85 318.2 221 71.0
Thhalv10021276m.g Eutrema salsugineum HOM05D006432 ORTHO05D008257 1.2e-84 317.4 229 68.1
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 2.0e-84 316.6 224 69.6
ECA240G3223 Erigeron canadensis HOM05D002023 ORTHO05D002049 2.6e-84 316.2 218 71.6
THA.LOC104804760 Tarenaya hassleriana HOM05D006432 ORTHO05D008257 2.6e-84 316.2 193 75.6
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 7.6e-84 314.7 193 76.2
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 7.6e-84 314.7 223 68.6
CARHR099370 Cardamine hirsuta HOM05D006432 ORTHO05D008257 1.3e-83 313.9 291 58.8
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 1.7e-83 313.5 193 75.6
PSO478G2331 Papaver somniferum HOM05D006432 ORTHO05D008257 3.8e-83 312.4 190 78.4
PSO017G5682 Papaver somniferum HOM05D006432 ORTHO05D008257 4.9e-83 312.0 190 77.9
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 6.4e-83 311.6 193 75.6
Hma1.2p1_0385F.1_g141230 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 4.6e-81 305.4 214 74.8
Nn3g19719 Nelumbo nucifera HOM05D006432 ORTHO05D008257 5.1e-80 302.0 309 59.5
Glyma.10G182900 Glycine max HOM05D006432 ORTHO05D008257 1.1e-77 294.3 168 84.5
MD13G1216500 Malus domestica HOM05D006432 ORTHO05D008257 3.2e-74 282.7 247 62.3
HPP92_005402 Vanilla planifolia HOM05D006432 ORTHO05D008257 3.5e-73 279.3 240 61.7
unitig_0.g1188 Utricularia gibba HOM05D006432 ORTHO05D008257 9.0e-69 264.6 271 60.9
SEGI_38471 Sequoiadendron giganteum HOM05D006432 ORTHO05D008257 8.8e-64 248.1 193 61.7
Pp3c11_17240 Physcomitrium patens HOM05D006432 ORTHO05D008257 1.5e-63 247.3 190 60.0
Nn1g02871 Nelumbo nucifera HOM05D006432 ORTHO05D008257 2.2e-62 243.4 173 74.0
SMO141G0176 Selaginella moellendorffii HOM05D006432 ORTHO05D008257 1.0e-59 234.6 190 61.1
Oeu055241.1 Olea europaea HOM05D000508 ORTHO05D000371 2.9e-59 233.0 266 51.9
AagrBONN_evm.TU.Sc2ySwM_228.2035 Anthoceros agrestis HOM05D006432 ORTHO05D008257 1.9e-58 230.3 191 57.1
BcaB05g22938 Brassica carinata HOM05D006432 ORTHO05D008257 1.8e-56 223.8 172 65.7
arahy.Tifrunner.gnm1.ann1.X8C4EZ Arachis hypogaea HOM05D006432 ORTHO05D008257 3.2e-50 203.0 114 82.5
arahy.Tifrunner.gnm1.ann1.508QQU Arachis hypogaea HOM05D006432 ORTHO05D008257 4.2e-50 202.6 114 81.6
Dinv29840 Davidia involucrata HOM05D006432 ORTHO05D008257 4.2e-50 202.6 137 75.9
Mapoly0012s0134 Marchantia polymorpha HOM05D006432 ORTHO05D008257 4.2e-50 202.6 190 53.2
Cpa.g.sc44.36 Carica papaya HOM05D006432 ORTHO05D008257 7.2e-50 201.8 110 84.5
SGA_v2.0_scaffold43G16214 Striga asiatica HOM05D006432 ORTHO05D008257 5.2e-48 195.7 114 79.8
CBR_g30839 Chara braunii HOM05D006432 ORTHO05D008257 9.4e-42 174.9 202 45.0
SGA_v2.0_scaffold370G50119 Striga asiatica HOM05D006432 ORTHO05D008257 3.6e-41 172.9 105 76.2
CDE03G0089 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 2.3e-40 170.2 114 70.2
Cpa.g.sc44.33 Carica papaya HOM05D006432 ORTHO05D008257 2.9e-35 153.3 179 54.7
FvH4_4g04000 Fragaria vesca HOM05D003789 ORTHO05D004158 6.1e-33 145.6 97 75.3
Phvul.010G070111 Phaseolus vulgaris HOM05D006432 ORTHO05D008257 9.8e-31 138.3 116 67.2
BcaB04g17238 Brassica carinata HOM05D006432 ORTHO05D008257 1.6e-28 131.0 105 61.9
BcaB02g08931 Brassica carinata HOM05D006432 ORTHO05D008257 2.7e-28 130.2 79 72.2
Nn1g02875 Nelumbo nucifera HOM05D006432 ORTHO05D008257 7.7e-28 128.6 84 81.0
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 1.3e-27 127.9 80 71.2
Cre02.g143667 Chlamydomonas reinhardtii HOM05D006432 ORTHO05D008257 2.9e-27 126.7 263 33.5
MCO05G338 Micromonas commoda HOM05D006432 ORTHO05D008257 1.1e-21 108.2 200 39.5
BcaB07g33946 Brassica carinata HOM05D006432 ORTHO05D008257 2.9e-19 100.1 62 69.4
Os05g0304200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 6.1e-17 92.4 73 67.1
Sabra10G0037800 Salix brachista HOM05D006432 ORTHO05D008257 2.1e-09 67.4 41 70.7
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 4.7e-09 66.2 198 30.8
CARHR203580 Cardamine hirsuta HOM05D005663 ORTHO05D007258 1.1e-08 65.1 191 29.3
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 1.4e-08 64.7 191 29.3
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 1.8e-08 64.3 190 30.5
PRCOL_00002195 Prasinoderma coloniale HOM05D006432 ORTHO05D008257 3.1e-08 63.5 153 34.6
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 4.0e-08 63.2 186 32.3
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 4.0e-08 63.2 189 27.5
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 5.2e-08 62.8 198 29.8
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 5.2e-08 62.8 192 29.2
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 5.2e-08 62.8 188 31.9
Glyma.08G185000 Glycine max HOM05D003483 ORTHO05D004101 6.8e-08 62.4 201 28.9
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 6.8e-08 62.4 214 27.6
PGSC0003DMG400003986 Solanum tuberosum HOM05D005663 ORTHO05D007258 8.9e-08 62.0 188 27.7
AT5G09820 Arabidopsis thaliana HOM05D005663 ORTHO05D007258 1.2e-07 61.6 191 28.8
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 1.2e-07 61.6 188 29.8
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 1.2e-07 61.6 191 27.2
AL6G20230 Arabidopsis lyrata HOM05D005663 ORTHO05D007258 1.5e-07 61.2 191 28.8
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 1.5e-07 61.2 184 31.0
CiPaw.03G123800 Carya illinoinensis HOM05D005663 ORTHO05D007258 1.5e-07 61.2 192 28.6
PSO541G2505 Papaver somniferum HOM05D005663 ORTHO05D007258 2.0e-07 60.8 186 29.6
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 2.6e-07 60.5 184 30.4
Sopen11g001350 Solanum pennellii HOM05D005663 ORTHO05D007258 2.6e-07 60.5 191 27.2
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 3.4e-07 60.1 186 32.3
Potri.001G309300 Populus trichocarpa HOM05D005663 ORTHO05D007258 3.4e-07 60.1 189 31.7
Carub.0006s0824 Capsella rubella HOM05D005663 ORTHO05D007258 5.8e-07 59.3 191 28.3
CAN.G345.5 Capsicum annuum HOM05D006432 ORTHO05D008257 5.8e-07 59.3 44 65.9
Duzib264G0763 Durio zibethinus HOM05D005663 ORTHO05D007258 7.5e-07 58.9 189 29.1
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 7.5e-07 58.9 183 30.1
Actinidia39049 Actinidia chinensis HOM05D003483 ORTHO05D004101 9.8e-07 58.5 185 31.4
BraA03t09772Z Brassica rapa HOM05D005663 ORTHO05D007258 9.8e-07 58.5 188 26.1
Cc07_g17370 Coffea canephora HOM05D005663 ORTHO05D007258 9.8e-07 58.5 192 30.2
Aa31LG3G17290 Aethionema arabicum HOM05D005663 ORTHO05D007258 1.3e-06 58.2 191 24.6
Psat7g048760 Pisum sativum HOM05D005663 ORTHO05D007258 1.3e-06 58.2 191 27.2
THA.LOC104818465 Tarenaya hassleriana HOM05D005663 ORTHO05D007258 1.3e-06 58.2 191 25.1
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 1.7e-06 57.8 204 28.9
Thhalv10014407m.g Eutrema salsugineum HOM05D005663 ORTHO05D007258 1.7e-06 57.8 191 25.7
RcHm_v2.0_Chr2g0119121 Rosa chinensis HOM05D005663 ORTHO05D007258 1.7e-06 57.8 193 26.9
FvH4_1g23570 Fragaria vesca HOM05D005663 ORTHO05D007258 2.2e-06 57.4 193 27.5
FAN26G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 2.2e-06 57.4 193 27.5
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 2.2e-06 57.4 250 29.2
Medtr2g007640 Medicago truncatula HOM05D003483 ORTHO05D004101 2.2e-06 57.4 199 29.1
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 2.2e-06 57.4 191 29.8
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 2.2e-06 57.4 186 28.5
Atru.chr4.540 Acer truncatum HOM05D005663 ORTHO05D007258 2.9e-06 57.0 188 28.7
Cre03.g197650 Chlamydomonas reinhardtii HOM05D006432 ORTHO05D044141 2.9e-06 57.0 205 26.8
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 2.9e-06 57.0 221 28.5
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 2.9e-06 57.0 203 29.6
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 2.9e-06 57.0 191 28.8
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 3.7e-06 56.6 185 30.3
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 3.7e-06 56.6 296 29.4
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 3.7e-06 56.6 191 27.7
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 3.7e-06 56.6 187 29.9
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 3.7e-06 56.6 188 29.3
A03p04280 Brassica napus HOM05D005663 ORTHO05D007258 4.9e-06 56.2 191 25.7
Nitab4.5_0009320g0020 Nicotiana tabacum HOM05D005663 ORTHO05D007258 4.9e-06 56.2 205 27.8
THA.LOC104825685 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 4.9e-06 56.2 187 27.3
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 6.4e-06 55.8 187 29.9
Sp6g33590 Schrenkiella parvula HOM05D005663 ORTHO05D007258 8.3e-06 55.5 293 23.5
unitig_899.g14706 Utricularia gibba HOM05D005663 ORTHO05D007258 8.3e-06 55.5 187 28.3


User provided reference genes

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