Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 2.7e-221 772.7 546 100.0
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.8e-84 318.2 264 56.4
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.1e-81 307.0 359 45.4
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 2.4e-57 228.0 284 42.6
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 1.8e-55 221.9 301 41.5
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 6.7e-55 219.9 277 45.5
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 8.4e-50 203.0 272 42.6
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 3.5e-48 197.6 293 40.3
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 9.7e-46 189.5 266 39.8
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 6.3e-45 186.8 306 38.2
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.5e-43 180.6 310 36.5
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 8.5e-42 176.4 304 36.5
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 8.8e-39 166.4 303 34.7
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 6.9e-36 156.8 279 35.8
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 2.0e-35 155.2 240 38.3
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 4.2e-33 147.5 285 35.8
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 4.2e-33 147.5 284 34.5
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 3.9e-31 141.0 256 34.8
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 3.9e-31 141.0 256 34.8
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 6.7e-31 140.2 306 33.3
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 3.3e-30 137.9 198 37.4
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 8.2e-29 133.3 268 33.2
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 2.6e-27 128.3 287 33.4
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 2.6e-27 128.3 311 31.8
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 2.6e-27 128.3 269 31.6
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 5.9e-27 127.1 181 38.1
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.0e-26 126.3 256 32.4
EL10Ac3g05636 Beta vulgaris HOM05D006287 ORTHO05D008192 1.9e-25 122.1 159 40.9
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 2.1e-24 118.6 140 44.3
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 2.7e-24 118.2 272 30.5
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 2.7e-24 118.2 126 47.6
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 1.0e-23 116.3 162 41.4
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 1.8e-23 115.5 144 45.1
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 3.0e-23 114.8 215 34.4
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 3.9e-23 114.4 177 41.2
Manes.03G017400 Manihot esculenta HOM05D006287 ORTHO05D008192 6.7e-23 113.6 103 54.4
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 2.6e-22 111.7 141 46.8
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 2.6e-22 111.7 302 27.8
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 3.3e-22 111.3 291 31.6
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.3e-21 109.4 240 31.2
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 1.7e-21 109.0 132 43.9
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 2.2e-21 108.6 151 41.7
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.4e-20 105.1 168 39.3
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 4.1e-20 104.4 163 39.3
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 5.3e-20 104.0 131 41.2
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 5.3e-20 104.0 240 29.6
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 7.0e-20 103.6 207 32.9
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 4.5e-19 100.9 149 40.9
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 7.7e-19 100.1 259 28.6
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 2.2e-18 98.6 181 35.9
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 5.0e-18 97.4 143 38.5
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 5.0e-18 97.4 246 29.3
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 1.5e-17 95.9 132 42.4
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 3.2e-17 94.7 269 27.9
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 4.2e-17 94.4 143 37.8
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 9.4e-17 93.2 251 27.9
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 9.4e-17 93.2 164 37.8
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 2.1e-16 92.0 264 28.4
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 2.7e-16 91.7 212 30.2
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 3.6e-16 91.3 286 29.4
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 4.7e-16 90.9 172 33.1
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 6.1e-16 90.5 182 31.9
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 8.0e-16 90.1 129 38.8
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 1.0e-15 89.7 130 40.0
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.0e-15 89.7 169 30.8
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 5.2e-15 87.4 143 37.1
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 5.2e-15 87.4 158 34.8
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 1.2e-14 86.3 158 34.8
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 2.6e-14 85.1 135 37.8
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 4.4e-14 84.3 117 38.5
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 5.7e-14 84.0 169 34.3
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 9.7e-14 83.2 115 40.9
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 9.7e-14 83.2 160 35.6
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 9.7e-14 83.2 110 40.9
CAN.G1030.28 Capsicum annuum HOM05D006287 ORTHO05D008192 1.3e-13 82.8 57 70.2
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 8.3e-13 80.1 143 32.9
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 1.1e-12 79.7 147 34.0
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 1.4e-12 79.3 144 34.7
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 1.8e-12 79.0 140 34.3
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 1.8e-12 79.0 151 35.1
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 1.8e-12 79.0 154 37.7
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 3.1e-12 78.2 127 35.4
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 7.0e-12 77.0 158 33.5
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 2.7e-11 75.1 149 34.9
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 4.5e-11 74.3 130 32.3
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 7.7e-11 73.6 151 31.8
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 7.7e-11 73.6 142 31.7
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 1.3e-10 72.8 110 36.4
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.3e-10 72.8 106 38.7
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 1.7e-10 72.4 165 27.9
Migut.A00317 Erythranthe guttata HOM05D006287 ORTHO05D008192 2.9e-10 71.6 92 37.0
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 2.9e-10 71.6 148 35.1
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 6.5e-10 70.5 145 33.1
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 3.2e-09 68.2 154 30.5
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 4.2e-09 67.8 129 32.6
Os01g0611900 Oryza sativa ssp. japonica HOM05D006287 ORTHO05D008192 4.2e-09 67.8 113 33.6
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 2.1e-08 65.5 123 33.3
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 3.6e-08 64.7 269 21.6
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 8.0e-08 63.5 118 32.2
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 4.0e-07 61.2 282 20.9
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 4.0e-07 61.2 207 25.1
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 5.2e-07 60.8 129 29.5
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 5.2e-07 60.8 153 30.7
RcHm_v2.0_Chr1g0326571 Rosa chinensis HOM05D006556 ORTHO05D008146 5.2e-07 60.8 270 21.5
Ah.15g092980 Amaranthus hybridus HOM05D000001 ORTHO05D000003 8.8e-07 60.1 191 23.6
Cfa000760 Carpinus fangiana HOM05D006556 ORTHO05D008146 8.8e-07 60.1 296 22.6
Solyc04g076370.4 Solanum lycopersicum HOM05D007402 ORTHO05D003673 2.0e-06 58.9 193 23.3
Sopen04g030130 Solanum pennellii HOM05D007402 ORTHO05D003673 2.0e-06 58.9 193 23.3
Hma1.2p1_0631F.1_g192380 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 2.6e-06 58.5 288 22.2
Hma1.2p1_0631F.1_g192390 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 2.6e-06 58.5 288 22.2
Hma1.2p1_0631F.1_g192404 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 2.6e-06 58.5 288 22.2
Os02g0167200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 4.4e-06 57.8 252 19.0
BcaNung04645 Brassica carinata HOM05D006287 ORTHO05D008192 7.5e-06 57.0 144 31.9
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 7.5e-06 57.0 309 22.3
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 7.5e-06 57.0 154 31.8
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 7.5e-06 57.0 154 31.8
Thecc.05G206300 Theobroma cacao HOM05D000001 ORTHO05D000003 9.8e-06 56.6 228 21.1
Zm00001eb092390 Zea mays HOM05D006287 ORTHO05D000003 9.8e-06 56.6 110 37.3


User provided reference genes

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