Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 7.4e-250 866.7 420 100.0
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 9.7e-202 706.8 411 79.6
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 3.0e-195 685.3 403 79.7
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.0e-194 682.6 403 79.2
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 6.8e-171 604.4 405 67.9
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 7.8e-159 564.3 402 65.4
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.3e-153 547.0 397 62.5
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 5.4e-152 541.6 403 62.0
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 5.4e-152 541.6 397 63.0
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 9.2e-152 540.8 394 64.5
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 1.6e-151 540.0 409 61.6
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.6e-151 540.0 394 64.7
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 7.8e-151 537.7 403 62.5
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 7.8e-151 537.7 395 63.0
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 3.0e-150 535.8 407 62.9
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 3.9e-150 535.4 398 61.6
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 3.9e-150 535.4 403 61.8
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 5.1e-150 535.0 394 63.5
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 8.6e-150 534.3 391 62.7
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.9e-149 533.1 401 62.1
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.9e-149 533.1 404 60.6
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 3.3e-149 532.3 403 61.8
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 4.3e-149 531.9 400 62.0
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.2e-148 530.4 401 63.6
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 1.6e-148 530.0 400 61.0
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.6e-148 530.0 404 62.4
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.1e-148 529.6 398 61.8
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 2.1e-148 529.6 395 62.8
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 2.1e-148 529.6 398 63.1
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 2.1e-148 529.6 406 60.8
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 3.6e-148 528.9 402 61.4
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.6e-148 528.9 395 62.8
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 6.2e-148 528.1 401 61.1
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 8.1e-148 527.7 404 60.6
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 8.1e-148 527.7 400 62.8
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 1.4e-147 526.9 403 59.1
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 1.8e-147 526.6 401 62.1
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 3.1e-147 525.8 398 61.6
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 5.2e-147 525.0 400 62.2
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 5.2e-147 525.0 398 62.1
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 6.9e-147 524.6 400 60.8
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 6.9e-147 524.6 395 63.0
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 6.9e-147 524.6 403 61.3
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 9.0e-147 524.2 400 60.8
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.2e-146 523.9 400 60.8
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 1.5e-146 523.5 401 60.8
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.5e-146 523.5 396 62.9
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 2.0e-146 523.1 400 60.5
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 2.0e-146 523.1 400 60.5
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 2.6e-146 522.7 398 60.3
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 4.4e-146 521.9 401 60.6
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 4.4e-146 521.9 398 59.3
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 4.4e-146 521.9 401 60.8
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 5.8e-146 521.5 399 60.7
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 5.8e-146 521.5 398 61.1
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 5.8e-146 521.5 398 61.1
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 5.8e-146 521.5 398 60.3
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 7.6e-146 521.2 399 60.4
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 9.9e-146 520.8 397 61.0
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 1.7e-145 520.0 398 59.8
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.7e-145 520.0 400 62.0
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 2.2e-145 519.6 404 62.6
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.2e-145 519.6 398 60.3
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 2.9e-145 519.2 398 61.1
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.8e-145 518.8 413 59.8
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 4.9e-145 518.5 403 59.1
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 4.9e-145 518.5 401 59.9
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 4.9e-145 518.5 410 60.2
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 8.4e-145 517.7 395 63.0
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.4e-144 516.9 398 60.6
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 1.4e-144 516.9 395 63.3
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.9e-144 516.5 393 61.1
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 3.2e-144 515.8 387 62.0
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.6e-143 513.5 401 60.1
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.1e-143 513.1 395 61.5
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 2.1e-143 513.1 402 59.7
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.5e-143 512.3 427 55.7
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.3e-142 510.4 397 61.0
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 2.3e-142 509.6 392 61.5
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 5.1e-142 508.4 393 58.8
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.5e-141 506.1 395 59.5
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.3e-141 505.8 395 61.5
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 6.2e-140 501.5 403 59.3
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.4e-139 500.4 403 59.3
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 1.4e-139 500.4 405 57.8
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 9.0e-139 497.7 392 60.5
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 9.0e-139 497.7 388 59.8
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.3e-137 493.8 399 57.9
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.3e-137 493.8 387 57.6
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 1.7e-137 493.4 384 59.6
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.8e-137 492.3 387 57.4
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 1.4e-136 490.3 394 59.4
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.9e-136 490.0 393 57.5
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 7.1e-136 488.0 385 60.3
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 7.1e-136 488.0 416 56.2
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.0e-134 484.2 414 55.1
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.3e-134 483.8 412 56.3
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 1.6e-132 476.9 393 57.8
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 4.8e-132 475.3 402 57.2
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 6.2e-132 474.9 398 56.3
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 6.2e-132 474.9 412 55.3
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 4.0e-131 472.2 387 57.6
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 4.5e-130 468.8 390 56.4
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 5.8e-130 468.4 387 56.6
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-129 466.8 383 58.0
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-129 466.8 383 58.0
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 3.8e-129 465.7 390 55.6
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.4e-129 464.5 377 58.6
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.4e-129 464.5 377 58.6
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.4e-128 463.8 388 55.2
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.2e-127 460.7 385 56.1
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.6e-127 460.3 388 54.9
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 7.9e-127 458.0 389 55.5
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.1e-125 454.1 383 55.6
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.3e-124 450.7 409 52.6
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.4e-123 447.2 385 55.1
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 3.1e-123 446.0 397 56.4
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 5.3e-123 445.3 404 55.0
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 1.2e-119 434.1 389 50.9
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.5e-117 426.4 416 50.7
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.2e-116 423.3 411 51.3
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 4.8e-116 422.2 400 51.2
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.3e-113 414.1 405 51.6
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 4.8e-108 395.6 385 49.9
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 6.9e-107 391.7 399 48.6
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.2e-106 391.0 399 49.6
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.5e-105 385.2 374 50.3
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 3.6e-103 379.4 390 47.7
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 7.9e-103 378.3 398 48.2
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.8e-99 367.1 406 46.6
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 3.9e-94 349.4 398 45.7
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 2.6e-93 346.7 403 44.4
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 4.8e-92 342.4 404 46.3
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 8.2e-84 315.1 394 42.6
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.5e-80 302.4 410 42.0
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 9.4e-80 301.6 401 41.9
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 2.8e-76 290.0 255 52.5
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 4.1e-75 286.2 397 40.8
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 2.7e-74 283.5 397 40.6
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.5e-69 267.7 400 40.5
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 9.8e-69 265.0 410 37.6
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 5.6e-64 249.2 186 58.1
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.0e-61 240.7 229 52.8
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 4.1e-59 233.0 427 33.5
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 4.0e-54 216.5 157 62.4
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 3.3e-40 170.2 156 53.2
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.4e-35 152.9 388 29.4
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 1.5e-32 144.8 110 56.4
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.8e-31 140.6 127 55.1
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.4e-27 127.5 319 27.6
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 6.0e-26 122.9 93 61.3
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 9.6e-16 89.0 411 25.3
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.6e-10 71.6 45 71.1
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 5.1e-09 66.6 408 21.6
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 8.7e-09 65.9 414 22.5
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 7.4e-08 62.8 408 23.3
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.6e-07 61.6 397 24.2
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.6e-07 61.6 47 51.1
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 1.6e-07 61.6 408 23.3
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 4.8e-07 60.1 398 21.9
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 6.2e-07 59.7 397 23.4
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 1.4e-06 58.5 419 21.5
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 1.4e-06 58.5 419 21.5
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 1.8e-06 58.2 418 21.8
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 1.8e-06 58.2 395 21.5
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 5.3e-06 56.6 416 21.9
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 6.9e-06 56.2 400 23.0
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 9.0e-06 55.8 420 22.1


User provided reference genes

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