Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g064660 Amaranthus hybridus HOM05D005257 ORTHO05D006425 1.5e-37 159.1 83 100.0
EL10Ac5g11757 Beta vulgaris HOM05D005257 ORTHO05D006425 7.7e-18 93.6 62 80.6
AUR62039715 Chenopodium quinoa HOM05D005257 ORTHO05D006425 1.1e-16 89.7 62 75.8
Sc10g0005500 Simmondsia chinensis HOM05D005257 ORTHO05D006425 5.5e-16 87.4 62 72.6
AUR62036264 Chenopodium quinoa HOM05D005257 ORTHO05D006425 2.7e-15 85.1 62 71.0
Ah.15g100140 Amaranthus hybridus HOM05D005257 ORTHO05D006425 1.8e-14 82.4 62 72.6
Ca_08293_v3 Cicer arietinum L. HOM05D005257 ORTHO05D006425 8.8e-14 80.1 62 64.5
Ca_29914_v3 Cicer arietinum L. HOM05D005257 ORTHO05D006425 8.8e-14 80.1 62 64.5
Psat3g087120 Pisum sativum HOM05D005257 ORTHO05D006425 8.8e-14 80.1 62 64.5
Actinidia21524 Actinidia chinensis HOM05D005257 ORTHO05D006425 1.2e-13 79.7 62 66.1
Phvul.001G113700 Phaseolus vulgaris HOM05D005257 ORTHO05D006425 1.2e-13 79.7 62 62.9
Cfa005496 Carpinus fangiana HOM05D005257 ORTHO05D006425 1.5e-13 79.3 66 65.2
Dinv05572 Davidia involucrata HOM05D005257 ORTHO05D006425 2.0e-13 79.0 62 66.1
arahy.Tifrunner.gnm1.ann1.B386PI Arachis hypogaea HOM05D005257 ORTHO05D006425 3.4e-13 78.2 62 62.9
arahy.Tifrunner.gnm1.ann1.DQ02GG Arachis hypogaea HOM05D005257 ORTHO05D006425 3.4e-13 78.2 62 62.9
arahy.Tifrunner.gnm1.ann1.JQ1SRI Arachis hypogaea HOM05D005257 ORTHO05D006425 3.4e-13 78.2 62 62.9
Medtr7g086290 Medicago truncatula HOM05D005257 ORTHO05D006425 3.4e-13 78.2 62 62.9
TPR.G17857 Trifolium pratense HOM05D005257 ORTHO05D006425 4.4e-13 77.8 62 62.9
Cc06_g07290 Coffea canephora HOM05D005257 ORTHO05D006425 5.7e-13 77.4 62 64.5
Dinv11935 Davidia involucrata HOM05D005257 ORTHO05D006425 5.7e-13 77.4 62 64.5
Lalb_Chr10g0095341 Lupinus albus HOM05D005257 ORTHO05D006425 5.7e-13 77.4 66 59.1
GSVIVG01029949001 Vitis vinifera HOM05D005257 ORTHO05D006425 5.7e-13 77.4 60 68.3
Lj1g0012853 Lotus japonicus HOM05D005257 ORTHO05D006425 7.5e-13 77.0 62 62.9
MD12G1008000 Malus domestica HOM05D005257 ORTHO05D006425 7.5e-13 77.0 62 66.1
Cfa017688 Carpinus fangiana HOM05D005257 ORTHO05D006425 9.8e-13 76.6 62 66.1
Hma1.2p1_0768F.1_g215600 Hydrangea macrophylla HOM05D005257 ORTHO05D006425 9.8e-13 76.6 62 64.5
VMungo1383G2809 Vigna mungo HOM05D005257 ORTHO05D006425 9.8e-13 76.6 62 61.3
arahy.Tifrunner.gnm1.ann1.YCKM6W Arachis hypogaea HOM05D005257 ORTHO05D006425 1.3e-12 76.3 62 62.9
Rhsim08G0079300 Rhododendron simsii HOM05D005257 ORTHO05D006425 1.3e-12 76.3 66 63.6
CiPaw.09G164800 Carya illinoinensis HOM05D005257 ORTHO05D006425 1.7e-12 75.9 62 67.7
Ciclev10018934m.g Citrus clementina HOM05D005257 ORTHO05D006425 1.7e-12 75.9 63 61.9
Lj1g0008743 Lotus japonicus HOM05D005257 ORTHO05D006425 1.7e-12 75.9 62 62.9
Glyma.16G038400 Glycine max HOM05D005257 ORTHO05D006425 2.2e-12 75.5 62 59.7
Atru.chr2.1463 Acer truncatum HOM05D005257 ORTHO05D006425 2.8e-12 75.1 61 65.6
CSS0043158 Camellia sinensis var. sinensis HOM05D005257 ORTHO05D006425 2.8e-12 75.1 62 64.5
CAN.G732.36 Capsicum annuum HOM05D005257 ORTHO05D006425 2.8e-12 75.1 62 64.5
MELO3C008815.2 Cucumis melo HOM05D005257 ORTHO05D006425 2.8e-12 75.1 62 66.1
Glyma.19G114400 Glycine max HOM05D005257 ORTHO05D006425 2.8e-12 75.1 62 59.7
Nitab4.5_0000098g0080 Nicotiana tabacum HOM05D005257 ORTHO05D006425 2.8e-12 75.1 62 64.5
Psat5g302960 Pisum sativum HOM05D005257 ORTHO05D006425 2.8e-12 75.1 62 61.3
HPP92_025446 Vanilla planifolia HOM05D005257 ORTHO05D006425 2.8e-12 75.1 62 61.3
HanXRQChr02g0058981 Helianthus annuus HOM05D005257 ORTHO05D006425 3.7e-12 74.7 62 61.3
Prupe.1G541500 Prunus persica HOM05D005257 ORTHO05D006425 3.7e-12 74.7 62 64.5
PGR042G3559 Punica granatum HOM05D005257 ORTHO05D006425 3.7e-12 74.7 62 64.5
Aqoxy1G00543 Aquilegia oxysepala HOM05D005257 ORTHO05D006425 4.8e-12 74.3 62 62.9
Haze_20460 Corylus avellana HOM05D005257 ORTHO05D006425 4.8e-12 74.3 62 64.5
MBI05_g42570_MAGBIO Magnolia biondii HOM05D005257 ORTHO05D006425 4.8e-12 74.3 60 66.7
PGR042G1596 Punica granatum HOM05D005257 ORTHO05D006425 4.8e-12 74.3 62 62.9
SalBow3G0128 Salvia bowleyana HOM05D005257 ORTHO05D006425 4.8e-12 74.3 62 58.1
ClCG04G005430 Citrullus lanatus HOM05D005257 ORTHO05D006425 6.3e-12 73.9 62 64.5
CsaV3_4G012150 Cucumis sativus L. HOM05D005257 ORTHO05D006425 6.3e-12 73.9 62 64.5
Lsat_1_v5_gn_9_60281 Lactuca sativa HOM05D005257 ORTHO05D006425 8.3e-12 73.6 62 59.7
Oeu044649.1 Olea europaea HOM05D005257 ORTHO05D006425 8.3e-12 73.6 62 59.7
TWI31G1180 Tripterygium wilfordii HOM05D005257 ORTHO05D006425 8.3e-12 73.6 63 60.3
MSTRG.19351 Avicennia marina HOM05D005257 ORTHO05D006425 1.1e-11 73.2 62 61.3
Gohir.D11G243400 Gossypium hirsutum HOM05D005257 ORTHO05D006425 1.1e-11 73.2 62 61.3
Gorai.007G258400 Gossypium raimondii HOM05D005257 ORTHO05D006425 1.1e-11 73.2 62 61.3
Duzib177G0708 Durio zibethinus HOM05D005257 ORTHO05D006425 1.4e-11 72.8 62 62.9
Lj4C106T9 Lonicera japonica HOM05D005257 ORTHO05D006425 1.4e-11 72.8 62 59.7
Sed0016053 Sechium edule HOM05D005257 ORTHO05D006425 1.4e-11 72.8 62 64.5
SEGI_16290 Sequoiadendron giganteum HOM05D005257 ORTHO05D006425 1.4e-11 72.8 60 61.7
THA.LOC104802876 Tarenaya hassleriana HOM05D005257 ORTHO05D006425 1.4e-11 72.8 62 59.7
HanXRQChr12g0354211 Helianthus annuus HOM05D005257 ORTHO05D006425 1.8e-11 72.4 62 61.3
ECA232G0672 Erigeron canadensis HOM05D005257 ORTHO05D006425 2.4e-11 72.0 62 59.7
Nitab4.5_0001606g0020 Nicotiana tabacum HOM05D005257 ORTHO05D006425 2.4e-11 72.0 62 61.3
Thecc.05G245000 Theobroma cacao HOM05D005257 ORTHO05D006425 2.4e-11 72.0 62 61.3
CDE10G0660 Ceratophyllum demersum HOM05D005257 ORTHO05D006425 3.1e-11 71.6 62 58.1
Peaxi162Scf00117g00415 Petunia axillaris HOM05D005257 ORTHO05D006425 4.1e-11 71.2 62 59.7
RcHm_v2.0_Chr6g0270841 Rosa chinensis HOM05D005257 ORTHO05D006425 4.1e-11 71.2 62 64.5
Sabra13G0054300 Salix brachista HOM05D005257 ORTHO05D006425 4.1e-11 71.2 60 60.0
Solyc03g097280.4 Solanum lycopersicum HOM05D005257 ORTHO05D006425 4.1e-11 71.2 62 59.7
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 4.1e-11 71.2 62 59.7
PSO339G0351 Papaver somniferum HOM05D005257 ORTHO05D006425 5.4e-11 70.9 62 56.5
PSO384G0627 Papaver somniferum HOM05D005257 ORTHO05D006425 5.4e-11 70.9 62 56.5
Potri.013G061400 Populus trichocarpa HOM05D005257 ORTHO05D006425 5.4e-11 70.9 60 58.3
GSVIVG01027853001 Vitis vinifera HOM05D005257 ORTHO05D006425 5.4e-11 70.9 62 62.9
FvH4_2g11600 Fragaria vesca HOM05D005257 ORTHO05D006425 1.2e-10 69.7 62 62.9
FAN27G2011 Fragaria x ananassa HOM05D005257 ORTHO05D006425 1.2e-10 69.7 62 62.9
CANSAT35G0669 Cannabis sativa HOM05D005257 ORTHO05D006425 1.6e-10 69.3 56 67.9
Eucgr.A02125 Eucalyptus grandis HOM05D005257 ORTHO05D006425 1.6e-10 69.3 63 57.1
FAN15G1561 Fragaria x ananassa HOM05D005257 ORTHO05D006425 2.0e-10 68.9 62 62.9
TAR362G1082 Trochodendron aralioides HOM05D005257 ORTHO05D006425 2.0e-10 68.9 53 67.9
Migut.J00763 Erythranthe guttata HOM05D005257 ORTHO05D006425 2.7e-10 68.6 62 56.5
Manes.08G154800 Manihot esculenta HOM05D005257 ORTHO05D006425 3.5e-10 68.2 62 56.5
DCAR_003248 Daucus carota HOM05D005257 ORTHO05D006425 4.5e-10 67.8 62 54.8
FAN24G1403 Fragaria x ananassa HOM05D005257 ORTHO05D006425 4.5e-10 67.8 62 61.3
ATR0697G033 Amborella trichopoda HOM05D005257 ORTHO05D006425 5.9e-10 67.4 83 47.0
Gohir.A11G232100 Gossypium hirsutum HOM05D005257 ORTHO05D006425 2.2e-09 65.5 55 63.6
Nn1g06286 Nelumbo nucifera HOM05D005257 ORTHO05D006425 2.9e-09 65.1 62 61.3
SGA_v2.0_scaffold31G12800 Striga asiatica HOM05D005257 ORTHO05D006425 3.8e-09 64.7 62 48.4
vmacro18109 Vaccinium macrocarpon HOM05D005257 ORTHO05D006425 6.5e-09 63.9 93 44.1
Pp3c3_21680 Physcomitrium patens HOM05D005257 ORTHO05D006425 8.5e-09 63.5 60 46.7
Pp3c3_21687 Physcomitrium patens HOM05D005257 ORTHO05D006425 8.5e-09 63.5 60 46.7
AagrBONN_evm.TU.Sc2ySwM_340.475 Anthoceros agrestis HOM05D005257 ORTHO05D006425 2.5e-08 62.0 60 48.3
Mapoly0135s0015 Marchantia polymorpha HOM05D005257 ORTHO05D006425 4.2e-08 61.2 60 50.0
Sp6g26340 Schrenkiella parvula HOM05D005257 ORTHO05D006425 4.2e-08 61.2 63 55.6
MBI05_g13905_MAGBIO Magnolia biondii HOM05D005257 ORTHO05D006425 1.2e-07 59.7 60 58.3
AT5G17930 Arabidopsis thaliana HOM05D005257 ORTHO05D006425 1.6e-07 59.3 62 53.2
CARHR195170 Cardamine hirsuta HOM05D005257 ORTHO05D006425 1.6e-07 59.3 62 53.2
Carub.0006s1614 Capsella rubella HOM05D005257 ORTHO05D006425 3.6e-07 58.2 62 51.6
Thhalv10012737m.g Eutrema salsugineum HOM05D005257 ORTHO05D006425 6.1e-07 57.4 62 51.6
AL6G29030 Arabidopsis lyrata HOM05D005257 ORTHO05D006425 8.0e-07 57.0 62 51.6
CBR_g51831 Chara braunii HOM05D005257 ORTHO05D006425 1.0e-06 56.6 60 45.0
C02p09500 Brassica napus HOM05D005257 ORTHO05D006425 1.4e-06 56.2 62 51.6
BraA02t05418Z Brassica rapa HOM05D005257 ORTHO05D006425 1.4e-06 56.2 62 51.6
Aa31LG11G11610 Aethionema arabicum HOM05D005257 ORTHO05D006425 2.3e-06 55.5 62 50.0
BcaB05g23293 Brassica carinata HOM05D005257 ORTHO05D006425 3.0e-06 55.1 62 51.6
A02p04570 Brassica napus HOM05D005257 ORTHO05D006425 5.2e-06 54.3 62 50.0
BolC2t06856H Brassica oleracea HOM05D005257 ORTHO05D006425 5.2e-06 54.3 62 50.0


User provided reference genes

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