Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g064050 Amaranthus hybridus HOM05D006924 ORTHO05D008218 2.3e-167 592.4 365 100.0
EL10Ac2g02609 Beta vulgaris HOM05D006924 ORTHO05D008218 1.3e-85 320.9 293 72.0
Hund25749 Selenicereus undatus HOM05D006924 ORTHO05D008218 6.7e-82 308.5 348 60.1
GSVIVG01035827001 Vitis vinifera HOM05D006924 ORTHO05D008218 9.7e-73 278.1 323 50.5
CSS0024674 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 2.8e-72 276.6 352 48.3
QL02p022351 Quercus lobata HOM05D006924 ORTHO05D008218 3.1e-71 273.1 367 49.9
AUR62024897 Chenopodium quinoa HOM05D006924 ORTHO05D008218 3.2e-68 263.1 291 61.2
Cfa013171 Carpinus fangiana HOM05D006924 ORTHO05D008218 1.6e-67 260.8 330 53.9
Thecc.09G150000 Theobroma cacao HOM05D006924 ORTHO05D008218 4.7e-67 259.2 326 48.5
MSTRG.1715 Avicennia marina HOM05D006924 ORTHO05D008218 1.8e-66 257.3 324 58.6
Peaxi162Scf00073g01120 Petunia axillaris HOM05D006924 ORTHO05D008218 1.1e-65 254.6 274 66.4
vmacro11153 Vaccinium macrocarpon HOM05D006924 ORTHO05D008218 3.3e-65 253.1 373 50.1
THA.LOC104815037 Tarenaya hassleriana HOM05D006924 ORTHO05D008218 5.7e-65 252.3 351 49.9
Sc09g0008380 Simmondsia chinensis HOM05D006924 ORTHO05D008218 7.5e-65 251.9 280 57.9
Nitab4.5_0002007g0080 Nicotiana tabacum HOM05D006924 ORTHO05D008218 1.7e-64 250.8 281 59.8
Nitab4.5_0009676g0020 Nicotiana tabacum HOM05D006924 ORTHO05D008218 1.7e-64 250.8 271 55.7
Cpa.g.sc115.10 Carica papaya HOM05D006924 ORTHO05D008218 3.7e-64 249.6 362 52.2
Nn8g39393 Nelumbo nucifera HOM05D006924 ORTHO05D008218 1.4e-63 247.7 276 64.1
Eucgr.C02804 Eucalyptus grandis HOM05D006924 ORTHO05D008218 1.8e-63 247.3 359 52.1
Migut.E01789 Erythranthe guttata HOM05D006924 ORTHO05D008218 9.1e-63 245.0 333 52.0
Duzib187G1593 Durio zibethinus HOM05D006924 ORTHO05D008218 1.2e-62 244.6 348 49.7
DCAR_001517 Daucus carota HOM05D006924 ORTHO05D008218 1.6e-62 244.2 309 57.0
Dinv15967 Davidia involucrata HOM05D006924 ORTHO05D008218 1.3e-61 241.1 345 50.4
Dinv18229 Davidia involucrata HOM05D006924 ORTHO05D008218 1.3e-61 241.1 345 50.4
TWI63G1089 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 3.8e-61 239.6 315 51.4
Actinidia13248 Actinidia chinensis HOM05D006924 ORTHO05D008218 6.5e-61 238.8 278 52.9
TWI34G0486 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 8.5e-61 238.4 332 47.0
PSO455G0271 Papaver somniferum HOM05D006924 ORTHO05D008218 1.9e-60 237.3 339 50.4
Lsat_1_v5_gn_5_30481 Lactuca sativa HOM05D006924 ORTHO05D008218 5.5e-60 235.7 359 49.0
CARHR201990 Cardamine hirsuta HOM05D006924 ORTHO05D008218 2.7e-59 233.4 351 48.7
Ciclev10010768m.g Citrus clementina HOM05D006924 ORTHO05D008218 2.7e-59 233.4 353 49.9
MELO3C003685.2 Cucumis melo HOM05D006924 ORTHO05D008218 3.6e-59 233.0 341 49.6
Solyc08g061140.3 Solanum lycopersicum HOM05D006924 ORTHO05D008218 3.6e-59 233.0 279 57.7
CANSAT21G2575 Cannabis sativa HOM05D006924 ORTHO05D008218 4.7e-59 232.6 326 50.6
COL.COLO4_00196 Corchorus olitorius HOM05D006924 ORTHO05D008218 6.1e-59 232.3 356 49.4
PGSC0003DMG400020785 Solanum tuberosum HOM05D006924 ORTHO05D008218 1.0e-58 231.5 322 51.6
Gohir.D08G257200 Gossypium hirsutum HOM05D006924 ORTHO05D008218 1.8e-58 230.7 286 52.4
Gorai.004G274200 Gossypium raimondii HOM05D006924 ORTHO05D008218 1.8e-58 230.7 286 51.7
Sabra06G0196700 Salix brachista HOM05D006924 ORTHO05D008218 1.8e-58 230.7 286 51.0
PSO455G0276 Papaver somniferum HOM05D006924 ORTHO05D008218 2.3e-58 230.3 302 51.7
Manes.03G016800 Manihot esculenta HOM05D006924 ORTHO05D008218 6.8e-58 228.8 333 48.0
Potri.006G251700 Populus trichocarpa HOM05D006924 ORTHO05D008218 6.8e-58 228.8 343 46.9
CsaV3_3G046540 Cucumis sativus L. HOM05D006924 ORTHO05D008218 1.5e-57 227.6 343 49.3
Sopen08g016210 Solanum pennellii HOM05D006924 ORTHO05D008218 2.0e-57 227.3 323 51.7
Aqoxy7G02106 Aquilegia oxysepala HOM05D006924 ORTHO05D008218 3.4e-57 226.5 314 51.0
MD08G1147000 Malus domestica HOM05D006924 ORTHO05D008218 5.7e-57 225.7 350 48.0
Gohir.A08G236600 Gossypium hirsutum HOM05D006924 ORTHO05D008218 7.5e-57 225.3 272 58.1
PSO170G6279 Papaver somniferum HOM05D006924 ORTHO05D008218 7.5e-57 225.3 294 53.7
FAN24G1985 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.3e-56 224.6 349 46.1
ECA246G2052 Erigeron canadensis HOM05D000004 ORTHO05D000048 1.7e-56 224.2 389 41.6
FAN27G0236 Fragaria x ananassa HOM05D006924 ORTHO05D008218 2.2e-56 223.8 328 48.8
Rhsim02G0195700 Rhododendron simsii HOM05D006924 ORTHO05D008218 2.8e-56 223.4 351 46.4
unitig_26.g9317 Utricularia gibba HOM05D006924 ORTHO05D008218 4.8e-56 222.6 280 49.6
ClCG05G017060 Citrullus lanatus HOM05D006924 ORTHO05D008218 6.3e-56 222.2 349 48.7
FvH4_2g29450 Fragaria vesca HOM05D006924 ORTHO05D008218 6.3e-56 222.2 338 48.5
Glyma.04G068000 Glycine max HOM05D006924 ORTHO05D008218 8.3e-56 221.9 316 44.3
Glyma.06G069700 Glycine max HOM05D006924 ORTHO05D008218 8.3e-56 221.9 277 49.8
Lj1g0004722 Lotus japonicus HOM05D006924 ORTHO05D008218 1.1e-55 221.5 317 47.6
Lalb_Chr23g0268731 Lupinus albus HOM05D006924 ORTHO05D008218 1.1e-55 221.5 314 46.8
Cc08_g00950 Coffea canephora HOM05D006924 ORTHO05D008218 2.4e-55 220.3 271 50.2
VMungo1309G0550 Vigna mungo HOM05D006924 ORTHO05D008218 4.1e-55 219.5 271 52.0
MBI04_g07630_MAGBIO Magnolia biondii HOM05D006924 ORTHO05D008218 7.0e-55 218.8 363 48.5
CAN.G6.23 Capsicum annuum HOM05D006924 ORTHO05D008218 9.1e-55 218.4 303 43.9
FAN20G0173 Fragaria x ananassa HOM05D006924 ORTHO05D008218 2.7e-54 216.9 329 48.6
Aa31LG3G15920 Aethionema arabicum HOM05D006924 ORTHO05D008218 1.0e-53 214.9 355 47.0
BraA10t44702Z Brassica rapa HOM05D006924 ORTHO05D008218 1.3e-53 214.5 265 54.3
Sed0001141 Sechium edule HOM05D006924 ORTHO05D008218 2.2e-53 213.8 315 51.7
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 3.8e-53 213.0 381 48.3
A10p26450 Brassica napus HOM05D006924 ORTHO05D008218 5.0e-53 212.6 261 54.4
RcHm_v2.0_Chr6g0298241 Rosa chinensis HOM05D006924 ORTHO05D008218 5.0e-53 212.6 343 46.1
CDE04G2397 Ceratophyllum demersum HOM05D006924 ORTHO05D008218 6.5e-53 212.2 358 43.0
AT5G11270 Arabidopsis thaliana HOM05D006924 ORTHO05D008218 1.5e-52 211.1 340 48.5
Phvul.009G094300 Phaseolus vulgaris HOM05D006924 ORTHO05D008218 1.9e-52 210.7 335 46.6
Ca_15720_v3 Cicer arietinum L. HOM05D006924 ORTHO05D008218 2.5e-52 210.3 305 44.9
AL6G21900 Arabidopsis lyrata HOM05D006924 ORTHO05D008218 3.2e-52 209.9 350 47.7
BcaC04g19245 Brassica carinata HOM05D006924 ORTHO05D008218 3.2e-52 209.9 262 56.5
Sp6g32290 Schrenkiella parvula HOM05D006924 ORTHO05D008218 5.5e-52 209.1 353 45.0
BolC9t59383H Brassica oleracea HOM05D006924 ORTHO05D008218 7.2e-52 208.8 261 54.0
BcaB08g37076 Brassica carinata HOM05D006924 ORTHO05D008218 9.4e-52 208.4 329 47.4
Carub.0006s0974 Capsella rubella HOM05D006924 ORTHO05D008218 9.4e-52 208.4 337 47.5
Rhsim02G0198800 Rhododendron simsii HOM05D006924 ORTHO05D008218 9.4e-52 208.4 411 40.4
Psat5g028520 Pisum sativum HOM05D006924 ORTHO05D008218 1.6e-51 207.6 315 43.2
TPR.G31774 Trifolium pratense HOM05D006924 ORTHO05D008218 1.4e-50 204.5 175 57.7
arahy.Tifrunner.gnm1.ann1.748QI4 Arachis hypogaea HOM05D006924 ORTHO05D008218 2.3e-50 203.8 331 46.2
ATR0564G047 Amborella trichopoda HOM05D006924 ORTHO05D008218 3.0e-50 203.4 280 53.6
HanXRQChr08g0234821 Helianthus annuus HOM05D006924 ORTHO05D008218 3.0e-50 203.4 391 39.1
arahy.Tifrunner.gnm1.ann1.SMV5T8 Arachis hypogaea HOM05D006924 ORTHO05D008218 8.8e-50 201.8 330 45.2
FAN15G1620 Fragaria x ananassa HOM05D006924 ORTHO05D008218 8.8e-50 201.8 179 59.2
Medtr3g107530 Medicago truncatula HOM05D006924 ORTHO05D008218 3.4e-49 199.9 267 45.7
Prupe.1G478200 Prunus persica HOM05D006924 ORTHO05D008218 9.8e-49 198.4 331 49.5
SalBow1G5089 Salvia bowleyana HOM05D006924 ORTHO05D008218 1.7e-48 197.6 155 63.9
CiPaw.08G012700 Carya illinoinensis HOM05D006924 ORTHO05D008218 1.1e-47 194.9 295 44.4
Zm00001eb385620 Zea mays HOM05D006924 ORTHO05D008218 1.1e-47 194.9 310 42.6
Os06g0601000 Oryza sativa ssp. japonica HOM05D006924 ORTHO05D008218 3.1e-47 193.4 266 50.4
Lj7C719T2 Lonicera japonica HOM05D006924 ORTHO05D008218 4.1e-47 193.0 237 62.9
Atru.chr7.2389 Acer truncatum HOM05D006924 ORTHO05D008218 2.0e-46 190.7 352 44.3
Thhalv10013990m.g Eutrema salsugineum HOM05D006924 ORTHO05D008218 2.3e-45 187.2 359 41.2
PGR044G1352 Punica granatum HOM05D006924 ORTHO05D008218 7.3e-44 182.2 311 46.9
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 2.1e-43 180.6 162 58.6
Haze_21546 Corylus avellana HOM05D006924 ORTHO05D008218 2.0e-41 174.1 317 45.4
AUR62030642 Chenopodium quinoa HOM05D006924 ORTHO05D008218 1.1e-39 168.3 298 48.3
TAR626G1567 Trochodendron aralioides HOM05D006924 ORTHO05D008218 1.1e-39 168.3 153 58.8
CSS0004992 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 4.7e-35 152.9 127 61.4
Mapoly0029s0145 Marchantia polymorpha HOM05D006924 ORTHO05D008218 1.1e-26 125.2 274 39.1
Atru.chr7.2280 Acer truncatum HOM05D006924 ORTHO05D008218 4.1e-23 113.2 115 51.3
Pp3c19_15790 Physcomitrium patens HOM05D006924 ORTHO05D008218 3.5e-22 110.2 158 40.5
Atru.chr10.503 Acer truncatum HOM05D006924 ORTHO05D008218 1.7e-16 91.3 345 31.6
SEGI_32810 Sequoiadendron giganteum HOM05D006924 ORTHO05D008218 3.9e-13 80.1 278 32.7
AagrBONN_evm.TU.Sc2ySwM_368.1808 Anthoceros agrestis HOM05D006924 ORTHO05D008218 2.5e-12 77.4 132 37.9
Haze_21544 Corylus avellana HOM05D006924 ORTHO05D008218 3.3e-12 77.0 55 67.3
Nn2g11969 Nelumbo nucifera HOM05D006924 ORTHO05D008218 1.2e-11 75.1 99 47.5
Atru.chr1.1063 Acer truncatum HOM05D006924 ORTHO05D008218 8.1e-11 72.4 86 47.7
TPR.G28713 Trifolium pratense HOM05D006924 ORTHO05D008218 3.4e-09 67.0 45 60.0
SMO367G1066 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 9.9e-09 65.5 55 49.1
Hma1.2p1_0000F.1_g000370 Hydrangea macrophylla HOM05D006924 ORTHO05D008218 9.3e-07 58.9 106 44.3


User provided reference genes

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