Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g063080 Amaranthus hybridus HOM05D001437 ORTHO05D001297 1.8e-301 1038.5 533 100.0
EL10Ac2g02531 Beta vulgaris HOM05D001437 ORTHO05D001297 1.1e-72 278.5 643 36.1
AUR62032387 Chenopodium quinoa HOM05D001437 ORTHO05D001297 7.8e-71 272.3 604 36.4
AUR62024828 Chenopodium quinoa HOM05D001437 ORTHO05D001297 8.1e-68 262.3 572 36.9
CiPaw.07G217000 Carya illinoinensis HOM05D001437 ORTHO05D001297 3.5e-23 114.0 519 28.3
Hma1.2p1_0175F.1_g077322 Hydrangea macrophylla HOM05D001437 ORTHO05D001297 3.9e-22 110.5 476 29.6
Cfa013220 Carpinus fangiana HOM05D001437 ORTHO05D001297 3.4e-18 97.4 521 27.1
TWI63G1217 Tripterygium wilfordii HOM05D001437 ORTHO05D001297 5.9e-18 96.7 452 30.1
Duzib168G2108 Durio zibethinus HOM05D001437 ORTHO05D001297 2.9e-17 94.4 530 27.9
QL12p031169 Quercus lobata HOM05D001437 ORTHO05D001297 5.5e-16 90.1 543 24.7
Sc23g0005810 Simmondsia chinensis HOM05D001437 ORTHO05D001297 1.0e-14 85.9 218 33.5
Atru.chr7.1313 Acer truncatum HOM05D001437 ORTHO05D001297 1.3e-14 85.5 482 25.7
CiPaw.08G016300 Carya illinoinensis HOM05D001437 ORTHO05D001297 3.0e-14 84.3 328 29.3
Haze_21635 Corylus avellana HOM05D001437 ORTHO05D001297 3.9e-14 84.0 549 26.0
Duzib187G0293 Durio zibethinus HOM05D001437 ORTHO05D001297 3.9e-14 84.0 439 28.2
CSS0032954 Camellia sinensis var. sinensis HOM05D001437 ORTHO05D001297 5.1e-14 83.6 452 28.3
Hund25655 Selenicereus undatus HOM05D001437 ORTHO05D001297 1.5e-13 82.0 528 25.2
Dinv30219 Davidia involucrata HOM05D001437 ORTHO05D001297 1.9e-13 81.6 413 28.8
MBI01_g16636_MAGBIO Magnolia biondii HOM05D001437 ORTHO05D001297 1.9e-13 81.6 475 26.3
Actinidia20344 Actinidia chinensis HOM05D001437 ORTHO05D001297 2.5e-13 81.3 137 41.6
Hma1.2p1_0018F.1_g013230 Hydrangea macrophylla HOM05D001437 ORTHO05D001297 3.3e-13 80.9 429 28.4
vmacro11110 Vaccinium macrocarpon HOM05D001437 ORTHO05D001297 3.3e-13 80.9 401 26.4
GSVIVG01015419001 Vitis vinifera HOM05D001437 ORTHO05D001297 3.3e-13 80.9 562 26.3
CANSAT54G0023 Cannabis sativa HOM05D001437 ORTHO05D001297 5.7e-13 80.1 413 28.3
Nn8g39251 Nelumbo nucifera HOM05D001437 ORTHO05D001297 5.7e-13 80.1 580 26.4
TWI32G0814 Tripterygium wilfordii HOM05D001437 ORTHO05D001297 5.7e-13 80.1 559 25.9
Thecc.09G143600 Theobroma cacao HOM05D001437 ORTHO05D001297 1.3e-12 79.0 519 26.4
Glyma.09G188300 Glycine max HOM05D001437 ORTHO05D001297 2.2e-12 78.2 491 27.1
Dinv41584 Davidia involucrata HOM05D001437 ORTHO05D001297 3.7e-12 77.4 445 26.7
Gohir.A06G060900 Gossypium hirsutum HOM05D001437 ORTHO05D001297 4.8e-12 77.0 567 25.6
MD08G1135500 Malus domestica HOM05D001437 ORTHO05D001297 4.8e-12 77.0 517 26.9
Manes.03G067000 Manihot esculenta HOM05D001437 ORTHO05D001297 8.2e-12 76.3 549 27.5
Actinidia09409 Actinidia chinensis HOM05D001437 ORTHO05D001297 1.4e-11 75.5 465 26.0
CSS0017855 Camellia sinensis var. sinensis HOM05D001437 ORTHO05D001297 1.4e-11 75.5 499 25.3
Cpa.g.sc23.124 Carica papaya HOM05D001437 ORTHO05D001297 1.8e-11 75.1 183 35.5
Glyma.08G039600 Glycine max HOM05D001437 ORTHO05D001297 1.8e-11 75.1 442 27.1
Lj8A609T42 Lonicera japonica HOM05D001437 ORTHO05D001297 1.8e-11 75.1 447 28.9
MBI04_g40088_MAGBIO Magnolia biondii HOM05D001437 ORTHO05D001297 3.1e-11 74.3 418 28.0
MD15G1114500 Malus domestica HOM05D001437 ORTHO05D001297 4.1e-11 73.9 458 26.0
GSVIVG01017129001 Vitis vinifera HOM05D001437 ORTHO05D001297 6.9e-11 73.2 563 25.0
Ciclev10010498m.g Citrus clementina HOM05D001437 ORTHO05D001297 9.0e-11 72.8 248 32.3
Glyma.07G088500 Glycine max HOM05D001437 ORTHO05D001297 9.0e-11 72.8 457 27.4
Gorai.004G279500 Gossypium raimondii HOM05D001437 ORTHO05D001297 1.5e-10 72.0 539 26.3
Lj7A646G41 Lonicera japonica HOM05D001437 ORTHO05D001297 1.5e-10 72.0 146 39.7
Lalb_Chr05g0222691 Lupinus albus HOM05D001437 ORTHO05D001297 1.5e-10 72.0 465 26.5
VMungo0251G3488 Vigna mungo HOM05D001437 ORTHO05D001297 1.5e-10 72.0 444 27.3
CsaV3_3G046730 Cucumis sativus L. HOM05D001437 ORTHO05D001297 2.6e-10 71.2 462 24.5
Glyma.05G232200 Glycine max HOM05D001437 ORTHO05D001297 2.6e-10 71.2 414 26.8
DCAR_024706 Daucus carota HOM05D001437 ORTHO05D001297 3.4e-10 70.9 420 26.2
DCAR_031958 Daucus carota HOM05D001437 ORTHO05D001297 3.4e-10 70.9 420 26.2
Gohir.D08G261400 Gossypium hirsutum HOM05D001437 ORTHO05D001297 3.4e-10 70.9 544 25.7
Prupe.7G227900 Prunus persica HOM05D001437 ORTHO05D001297 3.4e-10 70.9 529 24.6
COL.COLO4_34887 Corchorus olitorius HOM05D001437 ORTHO05D001297 4.5e-10 70.5 545 26.1
Gohir.A08G240700 Gossypium hirsutum HOM05D001437 ORTHO05D001297 4.5e-10 70.5 557 26.8
Oeu027164.1 Olea europaea HOM05D001437 ORTHO05D001297 4.5e-10 70.5 400 26.8
Gorai.009G023500 Gossypium raimondii HOM05D001437 ORTHO05D001297 1.7e-09 68.6 543 28.5
Potri.018G076200 Populus trichocarpa HOM05D001437 ORTHO05D001297 1.7e-09 68.6 518 26.6
Cc06_g09450 Coffea canephora HOM05D001437 ORTHO05D001297 2.2e-09 68.2 460 27.0
Sc08g0007330 Simmondsia chinensis HOM05D001437 ORTHO05D001297 3.8e-09 67.4 471 28.5
Atru.chr7.2316 Acer truncatum HOM05D001437 ORTHO05D001297 5.0e-09 67.0 562 24.4
Gohir.D05G023400 Gossypium hirsutum HOM05D001437 ORTHO05D001297 5.0e-09 67.0 545 27.5
Gohir.D06G059300 Gossypium hirsutum HOM05D001437 ORTHO05D001297 6.5e-09 66.6 543 25.8
Phvul.002G314500 Phaseolus vulgaris HOM05D001437 ORTHO05D001297 6.5e-09 66.6 433 27.7
Potri.006G246100 Populus trichocarpa HOM05D001437 ORTHO05D001297 6.5e-09 66.6 123 38.2
Sabra18G0064900 Salix brachista HOM05D001437 ORTHO05D001297 6.5e-09 66.6 556 27.3
MSTRG.10681 Avicennia marina HOM05D001437 ORTHO05D001297 8.5e-09 66.2 498 26.3
Phvul.002G314400 Phaseolus vulgaris HOM05D001437 ORTHO05D001297 8.5e-09 66.2 423 26.5
Sopen12g002950 Solanum pennellii HOM05D001437 ORTHO05D001297 8.5e-09 66.2 526 26.6
Gorai.010G069100 Gossypium raimondii HOM05D001437 ORTHO05D001297 1.1e-08 65.9 543 25.2
PGSC0003DMG400000322 Solanum tuberosum HOM05D001437 ORTHO05D001297 1.1e-08 65.9 530 26.4
Thecc.09G113500 Theobroma cacao HOM05D001437 ORTHO05D001297 1.1e-08 65.9 581 25.1
Gohir.A05G021800 Gossypium hirsutum HOM05D001437 ORTHO05D001297 1.4e-08 65.5 572 28.5
Lj2g0023387 Lotus japonicus HOM05D001437 ORTHO05D001297 1.4e-08 65.5 457 26.0
Oeu045172.1 Olea europaea HOM05D001437 ORTHO05D001297 1.9e-08 65.1 375 26.4
QL02p085888 Quercus lobata HOM05D001437 ORTHO05D001297 1.9e-08 65.1 561 23.4
Rhsim02G0186900 Rhododendron simsii HOM05D001437 ORTHO05D001297 1.9e-08 65.1 422 26.1
Solyc12g006990.2 Solanum lycopersicum HOM05D001437 ORTHO05D001297 1.9e-08 65.1 525 26.3
TAR636G2605 Trochodendron aralioides HOM05D001437 ORTHO05D001297 1.9e-08 65.1 506 25.1
vmacro20662 Vaccinium macrocarpon HOM05D001437 ORTHO05D001297 1.9e-08 65.1 437 26.8
CSS0033969 Camellia sinensis var. sinensis HOM05D001437 ORTHO05D001297 2.5e-08 64.7 498 25.1
MELO3C003662.2 Cucumis melo HOM05D001437 ORTHO05D001297 2.5e-08 64.7 453 26.3
Lj4g0011940 Lotus japonicus HOM05D001437 ORTHO05D001297 4.2e-08 63.9 443 26.4
Migut.K00462 Erythranthe guttata HOM05D001437 ORTHO05D001297 5.5e-08 63.5 437 27.7
Gohir.A05G011100 Gossypium hirsutum HOM05D001437 ORTHO05D001297 5.5e-08 63.5 369 26.3
Gohir.A06G048300 Gossypium hirsutum HOM05D001437 ORTHO05D001297 5.5e-08 63.5 488 25.4
Gorai.009G012100 Gossypium raimondii HOM05D001437 ORTHO05D001297 5.5e-08 63.5 447 25.1
Aa31sc91G10 Aethionema arabicum HOM05D001437 ORTHO05D001297 7.2e-08 63.2 350 25.1
Cc08_g08250 Coffea canephora HOM05D001437 ORTHO05D001297 7.2e-08 63.2 430 24.7
PGR044G0999 Punica granatum HOM05D001437 ORTHO05D001297 1.2e-07 62.4 327 27.8
Sed0000855 Sechium edule HOM05D001437 ORTHO05D001297 1.6e-07 62.0 467 25.5
THA.LOC104808754 Tarenaya hassleriana HOM05D001437 ORTHO05D001297 1.6e-07 62.0 322 27.3
Actinidia13292 Actinidia chinensis HOM05D001437 ORTHO05D001297 2.1e-07 61.6 469 25.6
Gorai.010G054100 Gossypium raimondii HOM05D001437 ORTHO05D001297 2.7e-07 61.2 524 25.4
CAN.G713.33 Capsicum annuum HOM05D001437 ORTHO05D001297 4.6e-07 60.5 501 25.1
Gohir.D05G011800 Gossypium hirsutum HOM05D001437 ORTHO05D001297 4.6e-07 60.5 434 24.9
Aa31LG8G11170 Aethionema arabicum HOM05D001437 ORTHO05D001297 6.1e-07 60.1 242 29.3
Dinv36609 Davidia involucrata HOM05D001437 ORTHO05D001297 7.9e-07 59.7 398 26.6
Ca_25439_v3 Cicer arietinum L. HOM05D001437 ORTHO05D001297 1.8e-06 58.5 427 26.0
Nn2g11804 Nelumbo nucifera HOM05D001437 ORTHO05D001297 1.8e-06 58.5 450 25.8
Psat7g014040 Pisum sativum HOM05D001437 ORTHO05D001297 1.8e-06 58.5 423 27.0
arahy.Tifrunner.gnm1.ann1.ZV0YIE Arachis hypogaea HOM05D001437 ORTHO05D001297 2.3e-06 58.2 566 24.9
Cpa.g.sc91.2 Carica papaya HOM05D001437 ORTHO05D001297 2.3e-06 58.2 342 28.9
DCAR_006260 Daucus carota HOM05D001437 ORTHO05D001297 3.0e-06 57.8 213 31.9
Medtr8g103750 Medicago truncatula HOM05D001437 ORTHO05D001297 3.0e-06 57.8 548 24.6
Manes.16G070500 Manihot esculenta HOM05D001437 ORTHO05D001297 3.9e-06 57.4 559 25.0
Phvul.001G056000 Phaseolus vulgaris HOM05D001437 ORTHO05D001297 3.9e-06 57.4 287 29.6
VMungo0647G2223 Vigna mungo HOM05D001437 ORTHO05D001297 3.9e-06 57.4 333 27.6
ClCG05G017250 Citrullus lanatus HOM05D001437 ORTHO05D001297 5.1e-06 57.0 466 26.0
Peaxi162Scf00546g00325 Petunia axillaris HOM05D001437 ORTHO05D001297 5.1e-06 57.0 514 24.7
Lalb_Chr08g0243741 Lupinus albus HOM05D001437 ORTHO05D001297 6.7e-06 56.6 286 25.2
Solyc08g067930.4 Solanum lycopersicum HOM05D001437 ORTHO05D001297 6.7e-06 56.6 517 25.5
TAR636G1076 Trochodendron aralioides HOM05D001437 ORTHO05D001297 6.7e-06 56.6 498 23.7


User provided reference genes

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