Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 0.0e+00 1160.6 583 100.0
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.7e-265 919.1 577 78.0
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 6.8e-262 907.1 657 71.4
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 3.5e-258 894.8 577 76.1
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 7.3e-256 887.1 574 75.8
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 2.4e-230 802.4 540 69.6
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 1.5e-229 799.7 574 67.6
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 2.0e-229 799.3 572 67.7
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 7.6e-229 797.3 550 69.8
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 7.1e-227 790.8 534 70.8
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 3.9e-225 785.0 576 65.8
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 8.7e-225 783.9 575 65.7
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 1.9e-224 782.7 538 68.8
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 2.8e-223 778.9 571 65.8
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 2.8e-223 778.9 572 66.3
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 1.4e-222 776.5 567 66.7
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 5.8e-221 771.2 569 65.6
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 6.5e-220 767.7 585 63.8
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 1.1e-219 766.9 544 66.4
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 5.5e-219 764.6 571 65.1
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 5.5e-219 764.6 572 65.9
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 2.1e-218 762.7 577 63.3
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 2.7e-218 762.3 574 65.9
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 3.5e-218 761.9 579 64.9
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 1.0e-217 760.4 580 64.8
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 1.3e-217 760.0 582 63.2
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.3e-217 760.0 569 64.5
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 1.8e-217 759.6 577 62.9
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 3.9e-217 758.4 576 64.2
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 3.9e-217 758.4 535 66.2
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 3.9e-217 758.4 575 64.0
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 8.7e-217 757.3 570 65.6
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 4.3e-216 755.0 534 68.0
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 1.6e-215 753.1 584 64.0
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 6.2e-215 751.1 562 65.1
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 2.4e-214 749.2 534 64.8
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 3.4e-213 745.3 563 63.9
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 5.8e-213 744.6 579 63.2
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 1.3e-212 743.4 562 63.2
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 1.3e-212 743.4 557 63.4
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 2.2e-212 742.7 571 62.5
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 2.2e-212 742.7 572 62.4
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 2.5e-211 739.2 580 64.0
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 4.2e-211 738.4 565 63.4
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 5.5e-211 738.0 557 64.3
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 9.3e-211 737.3 569 63.3
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 1.2e-210 736.9 569 62.7
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 2.7e-210 735.7 565 63.7
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 4.6e-210 734.9 571 61.6
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 7.9e-210 734.2 534 65.5
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 7.9e-210 734.2 534 65.2
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 1.3e-209 733.4 512 67.4
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 1.8e-209 733.0 592 60.0
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 2.3e-209 732.6 571 61.8
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 6.7e-209 731.1 571 61.3
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 1.1e-208 730.3 571 61.8
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 1.1e-208 730.3 534 65.0
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 3.3e-208 728.8 576 61.6
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 1.3e-207 726.9 581 61.3
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.6e-207 726.5 571 62.0
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 3.7e-207 725.3 571 61.3
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 1.1e-206 723.8 589 59.8
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 3.1e-206 722.2 575 61.4
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 2.6e-205 719.2 468 72.6
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 1.3e-204 716.8 575 61.0
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 4.6e-202 708.4 624 58.2
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 1.8e-201 706.4 569 61.2
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 1.0e-196 690.6 568 58.8
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 5.0e-196 688.3 549 61.7
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 5.0e-196 688.3 571 57.6
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 4.2e-195 685.3 564 60.5
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 1.4e-193 680.2 567 58.4
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 4.4e-192 675.2 463 68.7
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 1.7e-191 673.3 462 69.7
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 2.7e-186 656.0 463 67.2
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 4.0e-185 652.1 508 62.6
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 6.3e-183 644.8 563 56.3
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 5.4e-174 615.1 612 54.1
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 1.2e-173 614.0 460 63.5
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.9e-171 606.7 402 73.9
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 8.0e-170 601.3 537 57.7
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 1.5e-168 597.0 462 63.2
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 2.6e-168 596.3 422 66.8
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 2.8e-167 592.8 460 63.0
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 2.0e-165 586.6 515 58.3
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 1.9e-163 580.1 395 70.4
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 7.3e-163 578.2 531 55.6
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 6.4e-159 565.1 572 53.5
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 5.2e-153 545.4 534 49.8
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 1.9e-150 537.0 581 46.3
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 2.3e-145 520.0 578 46.2
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.9e-142 510.4 348 71.0
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 9.2e-142 508.1 546 47.6
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 3.5e-133 479.6 479 51.4
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 1.6e-130 470.7 320 68.1
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.7e-116 424.1 296 68.2
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.5e-115 421.0 357 57.4
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 2.4e-110 403.7 534 42.7
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 2.9e-103 380.2 265 67.2
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 7.1e-102 375.6 269 66.5
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.1e-99 368.2 309 57.3
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 7.2e-94 349.0 238 68.5
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 7.4e-91 339.0 717 33.8
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 1.7e-87 327.8 564 37.9
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 2.5e-86 323.9 564 37.2
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 5.5e-86 322.8 248 60.5
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 3.3e-75 287.0 473 37.0
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 4.8e-66 256.5 200 61.0
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 2.4e-65 254.2 542 34.9
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 1.0e-63 248.8 175 66.3
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 6.8e-52 209.5 140 68.6
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.5e-51 208.4 534 27.7
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.5e-51 208.4 528 30.9
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 2.0e-51 208.0 398 38.2
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 8.6e-47 192.6 121 73.6
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 2.7e-32 144.4 131 58.0
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 5.8e-27 126.7 95 61.1
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 5.1e-23 113.6 84 59.5
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 3.3e-22 110.9 112 57.1
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.0e-19 101.7 82 57.3
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.4e-19 100.9 190 35.8
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.2e-18 98.2 119 43.7
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 3.8e-18 97.4 103 47.6
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 1.9e-17 95.1 57 70.2
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 5.4e-17 93.6 105 46.7
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 9.2e-17 92.8 498 24.7
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.0e-15 87.8 140 37.1
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 5.1e-15 87.0 123 39.0
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.1e-14 85.9 126 38.1
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 1.9e-14 85.1 54 70.4
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.4e-12 78.2 81 53.1
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.0e-07 62.8 46 65.2
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 1.5e-06 58.9 35 68.6
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 1.5e-06 58.9 35 68.6
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 2.5e-06 58.2 48 54.2
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 4.3e-06 57.4 42 64.3


User provided reference genes

Program Settings