Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g053490 Amaranthus hybridus HOM05D001125 ORTHO05D002772 4.7e-39 164.1 84 100.0
Ah.12g057980 Amaranthus hybridus HOM05D001125 ORTHO05D002772 4.7e-31 137.5 70 98.6
Hund11552 Selenicereus undatus HOM05D001125 ORTHO05D002772 3.1e-22 108.2 81 71.6
AUR62017354 Chenopodium quinoa HOM05D001125 ORTHO05D002772 4.0e-22 107.8 79 69.6
AUR62010541 Chenopodium quinoa HOM05D001125 ORTHO05D002772 1.2e-21 106.3 79 68.4
EL10Ac5g12661 Beta vulgaris HOM05D001125 ORTHO05D002772 2.2e-20 102.1 58 84.5
Ciclev10019738m.g Citrus clementina HOM05D001125 ORTHO05D002772 3.0e-17 91.7 70 61.4
Manes.02G029775 Manihot esculenta HOM05D001125 ORTHO05D002772 1.1e-16 89.7 70 62.9
Cpa.g.sc29.55 Carica papaya HOM05D001125 ORTHO05D002772 2.5e-16 88.6 70 62.9
COL.COLO4_23829 Corchorus olitorius HOM05D001125 ORTHO05D002772 4.3e-16 87.8 81 56.8
Gorai.008G241500 Gossypium raimondii HOM05D001125 ORTHO05D002772 1.2e-15 86.3 81 56.8
GSVIVG01019918001 Vitis vinifera HOM05D001125 ORTHO05D002772 1.2e-15 86.3 70 61.4
Dinv39051 Davidia involucrata HOM05D001125 ORTHO05D002772 2.1e-15 85.5 70 62.9
Gohir.A12G222900 Gossypium hirsutum HOM05D001125 ORTHO05D002772 2.8e-15 85.1 81 55.6
Lalb_Chr09g0324641 Lupinus albus HOM05D001125 ORTHO05D002772 2.8e-15 85.1 66 63.6
Cc08_g13550 Coffea canephora HOM05D001125 ORTHO05D002772 3.6e-15 84.7 70 62.9
Aqoxy7G00577 Aquilegia oxysepala HOM05D001125 ORTHO05D002772 6.2e-15 84.0 70 60.0
arahy.Tifrunner.gnm1.ann1.B2CMKB Arachis hypogaea HOM05D001125 ORTHO05D002772 6.2e-15 84.0 67 64.2
Cfa012047 Carpinus fangiana HOM05D001125 ORTHO05D002772 6.2e-15 84.0 80 55.0
Haze_09020 Corylus avellana HOM05D001125 ORTHO05D002772 6.2e-15 84.0 70 58.6
Gohir.D12G225500 Gossypium hirsutum HOM05D001125 ORTHO05D002772 8.1e-15 83.6 81 58.0
QL12p015862 Quercus lobata HOM05D001125 ORTHO05D002772 8.1e-15 83.6 70 60.0
Sc01g0009040 Simmondsia chinensis HOM05D001125 ORTHO05D002772 8.1e-15 83.6 70 58.6
RcHm_v2.0_Chr7g0200391 Rosa chinensis HOM05D001125 ORTHO05D002772 1.1e-14 83.2 80 56.2
Thecc.03G265100 Theobroma cacao HOM05D001125 ORTHO05D002772 1.1e-14 83.2 81 56.8
Atru.chr9.1479 Acer truncatum HOM05D001125 ORTHO05D002772 1.4e-14 82.8 70 58.6
FAN18G1756 Fragaria x ananassa HOM05D001125 ORTHO05D002772 1.4e-14 82.8 80 56.2
Potri.003G117800 Populus trichocarpa HOM05D001125 ORTHO05D002772 2.4e-14 82.0 70 57.1
TAR374G0787 Trochodendron aralioides HOM05D001125 ORTHO05D002772 2.4e-14 82.0 70 61.4
FvH4_5g00990 Fragaria vesca HOM05D001125 ORTHO05D002772 4.0e-14 81.3 80 55.0
FAN04G2268 Fragaria x ananassa HOM05D001125 ORTHO05D002772 4.0e-14 81.3 80 55.0
FAN13G0963 Fragaria x ananassa HOM05D001125 ORTHO05D002772 4.0e-14 81.3 80 55.0
TAR629G3223 Trochodendron aralioides HOM05D001125 ORTHO05D002772 4.0e-14 81.3 70 55.7
VMungo1215G1646 Vigna mungo HOM05D001125 ORTHO05D002772 4.0e-14 81.3 67 56.7
Nn4g26443 Nelumbo nucifera HOM05D001125 ORTHO05D002772 5.2e-14 80.9 70 57.1
FAN08G1243 Fragaria x ananassa HOM05D001125 ORTHO05D002772 6.8e-14 80.5 80 55.0
MD04G1076100 Malus domestica HOM05D001125 ORTHO05D002772 6.8e-14 80.5 82 54.9
CiPaw.11G144700 Carya illinoinensis HOM05D001125 ORTHO05D002772 8.9e-14 80.1 80 53.8
Duzib084G0880 Durio zibethinus HOM05D001125 ORTHO05D002772 8.9e-14 80.1 65 61.5
Peaxi162Scf00620g00235 Petunia axillaris HOM05D001125 ORTHO05D002772 8.9e-14 80.1 70 52.9
THA.LOC104806354 Tarenaya hassleriana HOM05D001125 ORTHO05D002772 8.9e-14 80.1 66 60.6
TAR629G1613 Trochodendron aralioides HOM05D001125 ORTHO05D002772 1.2e-13 79.7 70 54.3
Glyma.01G213800 Glycine max HOM05D001125 ORTHO05D002772 1.5e-13 79.3 67 58.2
Nn1g01181 Nelumbo nucifera HOM05D001125 ORTHO05D002772 1.5e-13 79.3 70 54.3
Prupe.5G083700 Prunus persica HOM05D001125 ORTHO05D002772 2.6e-13 78.6 80 52.5
CAN.G630.29 Capsicum annuum HOM05D001125 ORTHO05D002772 3.4e-13 78.2 60 60.0
CANSAT21G2583 Cannabis sativa HOM05D001125 ORTHO05D002772 5.8e-13 77.4 63 58.7
Phvul.002G152300 Phaseolus vulgaris HOM05D001125 ORTHO05D002772 5.8e-13 77.4 67 53.7
CSS0018881 Camellia sinensis var. sinensis HOM05D001125 ORTHO05D002772 1.3e-12 76.3 70 54.3
CSS0040986 Camellia sinensis var. sinensis HOM05D001125 ORTHO05D002772 1.3e-12 76.3 70 54.3
Carub.0007s1841 Capsella rubella HOM05D001125 ORTHO05D002772 1.7e-12 75.9 80 50.0
Glyma.11G028100 Glycine max HOM05D001125 ORTHO05D002772 1.7e-12 75.9 67 55.2
CiPaw.12G102600 Carya illinoinensis HOM05D001125 ORTHO05D002772 2.9e-12 75.1 80 52.5
TWI81G0472 Tripterygium wilfordii HOM05D001125 ORTHO05D002772 2.9e-12 75.1 79 51.9
Glyma.17G137100 Glycine max HOM05D001125 ORTHO05D002772 3.8e-12 74.7 70 52.9
MBI12_g34483_MAGBIO Magnolia biondii HOM05D001125 ORTHO05D002772 3.8e-12 74.7 57 63.2
Solyc08g079760.4 Solanum lycopersicum HOM05D001125 ORTHO05D002772 3.8e-12 74.7 70 51.4
Potri.001G114400 Populus trichocarpa HOM05D001125 ORTHO05D002772 4.9e-12 74.3 70 51.4
Sopen08g028120 Solanum pennellii HOM05D001125 ORTHO05D002772 4.9e-12 74.3 70 51.4
Phvul.003G216700 Phaseolus vulgaris HOM05D001125 ORTHO05D002772 6.4e-12 73.9 70 55.7
Eucgr.E00497 Eucalyptus grandis HOM05D001125 ORTHO05D002772 8.4e-12 73.6 55 65.5
Oeu040246.1 Olea europaea HOM05D001125 ORTHO05D002772 8.4e-12 73.6 76 51.3
Aa31LG6G4940 Aethionema arabicum HOM05D001125 ORTHO05D002772 1.1e-11 73.2 50 70.0
AL7G30650 Arabidopsis lyrata HOM05D001125 ORTHO05D002772 1.1e-11 73.2 80 47.5
Lj2g0008063 Lotus japonicus HOM05D001125 ORTHO05D002772 1.1e-11 73.2 67 53.7
PSO478G5216 Papaver somniferum HOM05D001125 ORTHO05D002772 1.1e-11 73.2 78 48.7
PSO782G0579 Papaver somniferum HOM05D001125 ORTHO05D002772 1.1e-11 73.2 78 48.7
Ca_06676_v3 Cicer arietinum L. HOM05D001125 ORTHO05D002772 1.4e-11 72.8 55 63.6
Oeu022402.1 Olea europaea HOM05D001125 ORTHO05D002772 1.4e-11 72.8 71 57.7
Actinidia02067 Actinidia chinensis HOM05D001125 ORTHO05D002772 1.9e-11 72.4 70 52.9
AT4G22860 Arabidopsis thaliana HOM05D001125 ORTHO05D002772 1.9e-11 72.4 80 47.5
MD06G1068100 Malus domestica HOM05D001125 ORTHO05D002772 1.9e-11 72.4 81 51.9
TWI60G1296 Tripterygium wilfordii HOM05D001125 ORTHO05D002772 1.9e-11 72.4 63 54.0
BcaB03g11746 Brassica carinata HOM05D001125 ORTHO05D002772 2.4e-11 72.0 63 54.0
BcaC01g00799 Brassica carinata HOM05D001125 ORTHO05D002772 2.4e-11 72.0 55 60.0
C03p84430 Brassica napus HOM05D001125 ORTHO05D002772 2.4e-11 72.0 55 60.0
BolC3t20734H Brassica oleracea HOM05D001125 ORTHO05D002772 2.4e-11 72.0 55 60.0
Migut.A00877 Erythranthe guttata HOM05D001125 ORTHO05D002772 2.4e-11 72.0 53 66.0
Thhalv10029375m.g Eutrema salsugineum HOM05D001125 ORTHO05D002772 2.4e-11 72.0 63 54.0
SGA_v2.0_scaffold37G14861 Striga asiatica HOM05D001125 ORTHO05D002772 2.4e-11 72.0 70 57.1
arahy.Tifrunner.gnm1.ann1.JV155Z Arachis hypogaea HOM05D001125 ORTHO05D002772 3.2e-11 71.6 46 73.9
Glyma.05G054600 Glycine max HOM05D001125 ORTHO05D002772 3.2e-11 71.6 70 52.9
CARHR229900 Cardamine hirsuta HOM05D001125 ORTHO05D002772 4.1e-11 71.2 63 54.0
Gohir.A03G012700 Gossypium hirsutum HOM05D001125 ORTHO05D002772 4.1e-11 71.2 74 47.3
Sp6g05520 Schrenkiella parvula HOM05D001125 ORTHO05D002772 4.1e-11 71.2 86 41.9
Actinidia14489 Actinidia chinensis HOM05D001125 ORTHO05D002772 5.4e-11 70.9 70 54.3
Sp7g20940 Schrenkiella parvula HOM05D001125 ORTHO05D002772 5.4e-11 70.9 63 52.4
PGSC0003DMG400003944 Solanum tuberosum HOM05D001125 ORTHO05D002772 5.4e-11 70.9 58 58.6
A03p53830 Brassica napus HOM05D001125 ORTHO05D002772 7.1e-11 70.5 73 47.9
A08p16000 Brassica napus HOM05D001125 ORTHO05D002772 7.1e-11 70.5 55 58.2
MBI07_g03521_MAGBIO Magnolia biondii HOM05D001125 ORTHO05D002772 9.2e-11 70.1 54 61.1
Thhalv10024955m.g Eutrema salsugineum HOM05D001125 ORTHO05D002772 1.2e-10 69.7 63 50.8
VMungo0251G2883 Vigna mungo HOM05D001125 ORTHO05D002772 1.2e-10 69.7 70 52.9
BraA03t14452Z Brassica rapa HOM05D001125 ORTHO05D002772 1.6e-10 69.3 79 48.1
CsaV3_3G003370 Cucumis sativus L. HOM05D001125 ORTHO05D002772 1.6e-10 69.3 82 46.3
Hund04655 Selenicereus undatus HOM05D001125 ORTHO05D002772 1.6e-10 69.3 53 60.4
BcaNung01666 Brassica carinata HOM05D001125 ORTHO05D002772 2.1e-10 68.9 73 46.6
Gorai.003G164700 Gossypium raimondii HOM05D001125 ORTHO05D002772 2.1e-10 68.9 70 48.6
MBI16_g09477_MAGBIO Magnolia biondii HOM05D001125 ORTHO05D002772 2.1e-10 68.9 50 66.0
MSTRG.17721 Avicennia marina HOM05D001125 ORTHO05D002772 2.7e-10 68.6 51 62.7
Psat4g069600 Pisum sativum HOM05D001125 ORTHO05D002772 2.7e-10 68.6 71 47.9
Lj4g0017986 Lotus japonicus HOM05D001125 ORTHO05D002772 3.5e-10 68.2 70 47.1
MBI19_g21661_MAGBIO Magnolia biondii HOM05D001125 ORTHO05D002772 3.5e-10 68.2 46 69.6
C07p52230 Brassica napus HOM05D001125 ORTHO05D002772 4.6e-10 67.8 73 45.2
BolC7t45717H Brassica oleracea HOM05D001125 ORTHO05D002772 4.6e-10 67.8 73 45.2
Medtr5g011390 Medicago truncatula HOM05D001125 ORTHO05D002772 7.8e-10 67.0 56 60.7
THA.LOC104813006 Tarenaya hassleriana HOM05D001125 ORTHO05D002772 7.8e-10 67.0 69 49.3
PGR042G3061 Punica granatum HOM05D001125 ORTHO05D002772 1.0e-09 66.6 55 58.2
TPR.G19589 Trifolium pratense HOM05D001125 ORTHO05D002772 1.3e-09 66.2 47 68.1
TPR.G37583 Trifolium pratense HOM05D001125 ORTHO05D002772 1.3e-09 66.2 80 43.8
BraA09t38285Z Brassica rapa HOM05D001125 ORTHO05D002772 2.3e-09 65.5 67 49.3
Sc25g0000150 Simmondsia chinensis HOM05D001125 ORTHO05D002772 2.3e-09 65.5 75 44.0
DCAR_000881 Daucus carota HOM05D001125 ORTHO05D002772 3.0e-09 65.1 65 44.6
Duzib068G0705 Durio zibethinus HOM05D001125 ORTHO05D002772 3.0e-09 65.1 44 70.5
SalBow6G6785 Salvia bowleyana HOM05D001125 ORTHO05D002772 3.0e-09 65.1 70 50.0
A09p27160 Brassica napus HOM05D001125 ORTHO05D002772 3.9e-09 64.7 67 49.3
AUR62035036 Chenopodium quinoa HOM05D001125 ORTHO05D002772 3.9e-09 64.7 47 66.0
Ca_12291_v3 Cicer arietinum L. HOM05D001125 ORTHO05D002772 3.9e-09 64.7 80 43.8
Gohir.D03G156800 Gossypium hirsutum HOM05D001125 ORTHO05D002772 3.9e-09 64.7 60 50.0
Sed0006610 Sechium edule HOM05D001125 ORTHO05D002772 3.9e-09 64.7 70 48.6
Psat2g180680 Pisum sativum HOM05D001125 ORTHO05D002772 5.1e-09 64.3 48 68.8
Sabra03G0082000 Salix brachista HOM05D001125 ORTHO05D002772 5.1e-09 64.3 64 53.1
Haze_09018 Corylus avellana HOM05D001125 ORTHO05D002772 6.6e-09 63.9 44 68.2
MBI04_g46549_MAGBIO Magnolia biondii HOM05D001125 ORTHO05D002772 6.6e-09 63.9 67 52.2
BraA08t33572Z Brassica rapa HOM05D001125 ORTHO05D002772 8.7e-09 63.5 65 49.2
ATR0757G023 Amborella trichopoda HOM05D001125 ORTHO05D002772 1.1e-08 63.2 78 46.2
AUR62016089 Chenopodium quinoa HOM05D001125 ORTHO05D002772 1.1e-08 63.2 72 45.8
BcaC04g21183 Brassica carinata HOM05D001125 ORTHO05D002772 1.5e-08 62.8 67 47.8
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.5e-08 62.8 67 47.8
arahy.Tifrunner.gnm1.ann1.4UTI2R Arachis hypogaea HOM05D001125 ORTHO05D002772 1.9e-08 62.4 71 49.3
HanXRQChr02g0047681 Helianthus annuus HOM05D001125 ORTHO05D002772 1.9e-08 62.4 51 56.9
arahy.Tifrunner.gnm1.ann1.9N64NI Arachis hypogaea HOM05D001125 ORTHO05D002772 4.3e-08 61.2 71 47.9
EL10Ac3g05778 Beta vulgaris HOM05D001125 ORTHO05D002772 4.3e-08 61.2 50 58.0
CARHR254300 Cardamine hirsuta HOM05D001125 ORTHO05D002772 7.3e-08 60.5 63 49.2
HanXRQChr09g0246771 Helianthus annuus HOM05D001125 ORTHO05D002772 9.6e-08 60.1 77 42.9
AT4G11990 Arabidopsis thaliana HOM05D001125 ORTHO05D002772 1.2e-07 59.7 86 37.2
Lsat_1_v5_gn_6_8301 Lactuca sativa HOM05D001125 ORTHO05D002772 1.2e-07 59.7 51 56.9
AL6G46770 Arabidopsis lyrata HOM05D001125 ORTHO05D002772 1.6e-07 59.3 90 37.8
Os06g0130200 Oryza sativa ssp. japonica HOM05D001125 ORTHO05D002772 1.6e-07 59.3 52 55.8
TAR375G0684 Trochodendron aralioides HOM05D001125 ORTHO05D002772 2.1e-07 58.9 56 55.4
ECA233G5841 Erigeron canadensis HOM05D001125 ORTHO05D002772 3.6e-07 58.2 51 54.9
BcaB01g01696 Brassica carinata HOM05D001125 ORTHO05D002772 6.2e-07 57.4 65 46.2
Sabra01G0087500 Salix brachista HOM05D001125 ORTHO05D002772 8.1e-07 57.0 44 61.4
A10p02320 Brassica napus HOM05D001125 ORTHO05D003189 1.1e-06 56.6 81 37.0
BraA10t42499Z Brassica rapa HOM05D001125 ORTHO05D003189 1.1e-06 56.6 81 37.0
Lalb_Chr05g0225241 Lupinus albus HOM05D001125 ORTHO05D002772 1.1e-06 56.6 60 51.7
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 1.4e-06 56.2 52 53.8
ClCG00G000090 Citrullus lanatus HOM05D001125 ORTHO05D002772 1.4e-06 56.2 63 49.2
ClCG00G004050 Citrullus lanatus HOM05D001125 ORTHO05D002772 1.4e-06 56.2 63 49.2
MSTRG.1918 Avicennia marina HOM05D001125 ORTHO05D002772 1.8e-06 55.8 71 46.5
AagrBONN_evm.TU.Sc2ySwM_117.1028 Anthoceros agrestis HOM05D001125 ORTHO05D003189 2.4e-06 55.5 49 57.1
Aa31LG5G2980 Aethionema arabicum HOM05D001125 ORTHO05D003189 3.1e-06 55.1 67 41.8
BcaC06g31636 Brassica carinata HOM05D001125 ORTHO05D003189 3.1e-06 55.1 52 51.9
Pp3c23_4540 Physcomitrium patens HOM05D001125 ORTHO05D003189 3.1e-06 55.1 53 50.9
BcaC06g34577 Brassica carinata HOM05D001125 ORTHO05D003189 4.0e-06 54.7 81 39.5
C07p26940 Brassica napus HOM05D001125 ORTHO05D003189 4.0e-06 54.7 81 39.5
BolC7t43222H Brassica oleracea HOM05D001125 ORTHO05D003189 4.0e-06 54.7 81 39.5
QL12p039410 Quercus lobata HOM05D001125 ORTHO05D002772 4.0e-06 54.7 70 42.9
ATR0752G128 Amborella trichopoda HOM05D001125 ORTHO05D003189 5.2e-06 54.3 81 42.0
ClCG00G004640 Citrullus lanatus HOM05D001125 ORTHO05D002772 5.2e-06 54.3 45 55.6
ClCG10G003340 Citrullus lanatus HOM05D001125 ORTHO05D002772 5.2e-06 54.3 45 55.6
Sp1g02640 Schrenkiella parvula HOM05D001125 ORTHO05D003189 5.2e-06 54.3 81 35.8
C05p02130 Brassica napus HOM05D001125 ORTHO05D003189 6.9e-06 53.9 52 44.2
BolC5t28990H Brassica oleracea HOM05D001125 ORTHO05D003189 6.9e-06 53.9 52 44.2
TAR627G0354 Trochodendron aralioides HOM05D001125 ORTHO05D003189 6.9e-06 53.9 66 43.9
TAR627G0421 Trochodendron aralioides HOM05D001125 ORTHO05D003189 6.9e-06 53.9 66 43.9
BcaC05g24510 Brassica carinata HOM05D001125 ORTHO05D003189 9.0e-06 53.5 52 44.2
BcaC07g42227 Brassica carinata HOM05D001125 ORTHO05D003189 9.0e-06 53.5 81 37.0
C08p52650 Brassica napus HOM05D001125 ORTHO05D003189 9.0e-06 53.5 81 37.0
BolC8t52791H Brassica oleracea HOM05D001125 ORTHO05D003189 9.0e-06 53.5 81 37.0
Thhalv10006864m.g Eutrema salsugineum HOM05D001125 ORTHO05D003189 9.0e-06 53.5 81 37.0
Sc21g0003100 Simmondsia chinensis HOM05D001125 ORTHO05D003189 9.0e-06 53.5 67 35.8
Solyc12g005480.2 Solanum lycopersicum HOM05D001125 ORTHO05D003189 9.0e-06 53.5 57 54.4
THA.LOC104801165 Tarenaya hassleriana HOM05D001125 ORTHO05D003189 9.0e-06 53.5 67 38.8


User provided reference genes

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