Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.12g052300 Amaranthus hybridus HOM05D002129 ORTHO05D002188 0.0e+00 1464.9 876 100.0
AUR62010808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 6.4e-248 861.3 904 57.6
AUR62019807 Chenopodium quinoa HOM05D002129 ORTHO05D002188 1.1e-194 684.5 905 49.6
EL10Ac5g12883 Beta vulgaris HOM05D002129 ORTHO05D002188 1.2e-140 505.0 859 45.5
Sc01g0010120 Simmondsia chinensis HOM05D002129 ORTHO05D002188 7.4e-95 352.8 689 38.2
Sc07g0009950 Simmondsia chinensis HOM05D002129 ORTHO05D002188 4.5e-92 343.6 936 33.1
FAN18G1710 Fragaria x ananassa HOM05D002129 ORTHO05D002188 5.2e-48 197.2 953 25.7
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 2.4e-45 188.3 930 25.1
FvH4_5g04071 Fragaria vesca HOM05D002129 ORTHO05D002188 2.5e-42 178.3 883 25.5
FAN04G1467 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.9e-38 164.9 963 23.7
RcHm_v2.0_Chr7g0195441 Rosa chinensis HOM05D002129 ORTHO05D002188 1.9e-37 162.2 962 24.5
Potri.003G137300 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.3e-35 156.0 894 26.5
PGSC0003DMG400004988 Solanum tuberosum HOM05D002129 ORTHO05D002188 8.1e-33 146.7 863 24.6
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 1.4e-32 146.0 867 24.0
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 1.3e-30 139.4 913 22.9
Sopen12g028580 Solanum pennellii HOM05D002129 ORTHO05D002188 1.3e-30 139.4 867 24.2
Atru.chr9.2043 Acer truncatum HOM05D002129 ORTHO05D002188 1.4e-29 136.0 527 28.1
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 2.4e-29 135.2 892 24.0
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.1e-28 132.1 867 24.3
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 3.5e-28 131.3 827 24.4
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 4.6e-28 131.0 952 23.2
TWI15G0725 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 6.0e-28 130.6 871 26.6
CAN.G26.3 Capsicum annuum HOM05D002129 ORTHO05D002188 7.8e-28 130.2 897 23.9
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 1.0e-27 129.8 864 25.0
TPR.G3398 Trifolium pratense HOM05D002129 ORTHO05D002188 1.7e-27 129.0 634 25.2
Sabra03G0098800 Salix brachista HOM05D002129 ORTHO05D002188 1.1e-26 126.3 872 22.6
Solyc12g056060.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 1.5e-26 125.9 865 23.6
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 1.9e-26 125.6 998 23.5
CsaV3_4G006410 Cucumis sativus L. HOM05D002129 ORTHO05D002188 2.5e-26 125.2 583 26.8
MELO3C016309.2 Cucumis melo HOM05D002129 ORTHO05D002188 5.6e-26 124.0 588 26.2
QL02p031447 Quercus lobata HOM05D002129 ORTHO05D002188 7.3e-26 123.6 858 24.6
FAN18G4347 Fragaria x ananassa HOM05D002129 ORTHO05D002188 9.6e-26 123.2 921 22.8
Cc08_g15770 Coffea canephora HOM05D002129 ORTHO05D002188 3.1e-24 118.2 861 23.8
CANSAT21G0822 Cannabis sativa HOM05D002129 ORTHO05D002188 5.3e-24 117.5 564 26.4
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 1.2e-23 116.3 576 29.7
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 2.6e-23 115.2 1112 25.8
Oeu061086.1 Olea europaea HOM05D002129 ORTHO05D002188 2.6e-23 115.2 877 23.8
Manes.01G046000 Manihot esculenta HOM05D002129 ORTHO05D002188 4.5e-23 114.4 858 24.2
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 7.6e-23 113.6 947 22.5
Cfa012842 Carpinus fangiana HOM05D002129 ORTHO05D002188 4.2e-21 107.8 712 25.8
CSS0006894 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 7.1e-21 107.1 283 29.7
Peaxi162Scf00102g00176 Petunia axillaris HOM05D002129 ORTHO05D002188 9.3e-21 106.7 341 29.3
Sed0023438 Sechium edule HOM05D002129 ORTHO05D002188 9.3e-21 106.7 461 26.7
FAN08G2732 Fragaria x ananassa HOM05D002129 ORTHO05D002188 4.6e-20 104.4 692 24.0
Lj8P210T83 Lonicera japonica HOM05D002129 ORTHO05D002188 6.0e-20 104.0 592 24.0
Actinidia01396 Actinidia chinensis HOM05D002129 ORTHO05D002188 7.9e-20 103.6 915 22.1
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 1.0e-19 103.2 578 25.4
Haze_08667 Corylus avellana HOM05D002129 ORTHO05D002188 1.0e-19 103.2 673 26.2
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 2.3e-19 102.1 860 23.1
Duzib205G1563 Durio zibethinus HOM05D002129 ORTHO05D002188 2.3e-19 102.1 522 26.6
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 3.0e-19 101.7 874 21.6
Medtr8g099290 Medicago truncatula HOM05D002129 ORTHO05D002188 3.0e-19 101.7 658 26.3
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 5.1e-19 100.9 341 28.7
Nitab4.5_0005112g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 8.7e-19 100.1 893 22.4
unitig_52.g17439 Utricularia gibba HOM05D002129 ORTHO05D002188 1.9e-18 99.0 634 24.4
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.5e-18 98.6 874 21.5
Cpa.g.sc122.43 Carica papaya HOM05D002129 ORTHO05D002188 1.3e-17 96.3 688 26.7
Lj4g0006933 Lotus japonicus HOM05D002129 ORTHO05D002188 1.6e-17 95.9 606 24.8
Duzib068G0910 Durio zibethinus HOM05D002129 ORTHO05D002188 6.2e-17 94.0 852 23.5
CSS0015477 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 8.1e-17 93.6 398 26.1
Duzib068G1418 Durio zibethinus HOM05D002129 ORTHO05D002188 1.8e-16 92.4 1116 20.0
Gohir.A02G102200 Gossypium hirsutum HOM05D002129 ORTHO05D002188 4.0e-16 91.3 456 25.9
Lalb_Chr05g0224241 Lupinus albus HOM05D002129 ORTHO05D002188 4.0e-16 91.3 593 23.1
Manes.10G064266 Manihot esculenta HOM05D002129 ORTHO05D002188 4.0e-16 91.3 833 22.6
Oeu042385.1 Olea europaea HOM05D002129 ORTHO05D002188 4.0e-16 91.3 171 35.1
QL12p009828 Quercus lobata HOM05D002129 ORTHO05D002188 6.9e-16 90.5 552 26.1
arahy.Tifrunner.gnm1.ann1.X2XLI1 Arachis hypogaea HOM05D002129 ORTHO05D002188 9.0e-16 90.1 860 22.1
QL12p010595 Quercus lobata HOM05D002129 ORTHO05D002188 9.0e-16 90.1 552 26.1
Ca_17496_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 1.2e-15 89.7 614 23.3
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 1.5e-15 89.4 957 24.8
Lalb_Chr16g0390551 Lupinus albus HOM05D002129 ORTHO05D002188 2.0e-15 89.0 924 23.2
AT5G41780 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 2.6e-15 88.6 574 25.1
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 3.4e-15 88.2 103 47.6
Migut.E01236 Erythranthe guttata HOM05D002129 ORTHO05D002188 4.5e-15 87.8 537 23.1
unitig_748.g7418 Utricularia gibba HOM05D002129 ORTHO05D002188 5.8e-15 87.4 473 23.3
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 7.6e-15 87.0 546 23.1
Medtr8g099265 Medicago truncatula HOM05D002129 ORTHO05D002188 1.3e-14 86.3 891 20.5
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.7e-14 85.9 1099 23.7
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 3.8e-14 84.7 389 33.4
Actinidia27335 Actinidia chinensis HOM05D002129 ORTHO05D002188 6.4e-14 84.0 101 42.6
CARHR046640 Cardamine hirsuta HOM05D002129 ORTHO05D002188 6.4e-14 84.0 618 23.1
Actinidia04211 Actinidia chinensis HOM05D002129 ORTHO05D002188 1.1e-13 83.2 331 27.2
Oeu042386.1 Olea europaea HOM05D002129 ORTHO05D002188 1.1e-13 83.2 520 24.0
Manes.02G012600 Manihot esculenta HOM05D002129 ORTHO05D002188 1.4e-13 82.8 151 39.1
SalBow8G3978 Salvia bowleyana HOM05D002129 ORTHO05D002188 1.4e-13 82.8 299 26.4
Glyma.08G021400 Glycine max HOM05D002129 ORTHO05D002188 1.9e-13 82.4 101 41.6
BraA07t29778Z Brassica rapa HOM05D002129 ORTHO05D002188 2.5e-13 82.0 405 25.2
Sopen08g004110 Solanum pennellii HOM05D002129 ORTHO05D002188 2.5e-13 82.0 972 22.1
MSTRG.11936 Avicennia marina HOM05D002129 ORTHO05D002188 4.2e-13 81.3 890 21.3
Actinidia04212 Actinidia chinensis HOM05D002129 ORTHO05D002188 7.1e-13 80.5 363 25.1
LjContig00312_ERROPOS870357g0010036 Lotus japonicus HOM05D002129 ORTHO05D002188 7.1e-13 80.5 878 21.4
CAN.G792.47 Capsicum annuum HOM05D002129 ORTHO05D002188 1.2e-12 79.7 978 20.9
Potri.001G094200 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.2e-12 79.7 1116 21.3
AL2G10620 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 1.6e-12 79.3 569 23.7
Lalb_Chr09g0332631 Lupinus albus HOM05D002129 ORTHO05D002188 1.6e-12 79.3 1173 23.1
MD14G1121500 Malus domestica HOM05D002129 ORTHO05D002188 1.6e-12 79.3 973 20.3
MSTRG.1816 Avicennia marina HOM05D002129 ORTHO05D002188 2.1e-12 79.0 362 29.6
BcaB02g07879 Brassica carinata HOM05D002129 ORTHO05D002188 2.7e-12 78.6 443 23.3
Migut.A00679 Erythranthe guttata HOM05D002129 ORTHO05D002188 2.7e-12 78.6 101 43.6
Solyc08g008260.2 Solanum lycopersicum HOM05D002129 ORTHO05D002188 3.5e-12 78.2 968 22.5
arahy.Tifrunner.gnm1.ann1.F3VNHJ Arachis hypogaea HOM05D002129 ORTHO05D002188 4.6e-12 77.8 151 35.1
BcaC08g44555 Brassica carinata HOM05D002129 ORTHO05D002188 4.6e-12 77.8 405 24.9
PGSC0003DMG400005787 Solanum tuberosum HOM05D002129 ORTHO05D002188 6.0e-12 77.4 983 22.8
VMungo0251G1428 Vigna mungo HOM05D002129 ORTHO05D002188 7.9e-12 77.0 102 40.2
arahy.Tifrunner.gnm1.ann1.P7UIV5 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.0e-11 76.6 151 34.4
Lalb_Chr05g0224251 Lupinus albus HOM05D002129 ORTHO05D002188 1.0e-11 76.6 863 22.0
BolC6t37201H Brassica oleracea HOM05D002129 ORTHO05D002188 1.3e-11 76.3 405 24.7
AUR62010809 Chenopodium quinoa HOM05D002129 ORTHO05D002188 1.8e-11 75.9 636 21.2
COL.COLO4_21719 Corchorus olitorius HOM05D002129 ORTHO05D002188 2.3e-11 75.5 910 21.9
Oeu061087.1 Olea europaea HOM05D002129 ORTHO05D002188 2.3e-11 75.5 516 27.1
SGA_v2.0_scaffold173G39089 Striga asiatica HOM05D002129 ORTHO05D002188 2.3e-11 75.5 228 26.8
TAR374G0929 Trochodendron aralioides HOM05D002129 ORTHO05D002188 2.3e-11 75.5 220 28.6
arahy.Tifrunner.gnm1.ann1.DN0YA4 Arachis hypogaea HOM05D002129 ORTHO05D002188 3.9e-11 74.7 574 23.3
AUR62019808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 3.9e-11 74.7 268 27.6
Cc08_g15780 Coffea canephora HOM05D002129 ORTHO05D002188 3.9e-11 74.7 98 40.8
CsaV3_4G006420 Cucumis sativus L. HOM05D002129 ORTHO05D002188 3.9e-11 74.7 608 22.2
Gohir.A08G099784 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.9e-11 74.7 876 25.9
Carub.0002s0049 Capsella rubella HOM05D002129 ORTHO05D002188 6.7e-11 73.9 571 22.9
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 6.7e-11 73.9 295 25.4
Phvul.002G296300 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 6.7e-11 73.9 102 38.2
THA.LOC104823609 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 6.7e-11 73.9 459 27.5
BcaB07g31454 Brassica carinata HOM05D002129 ORTHO05D002188 8.7e-11 73.6 222 29.3
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 8.7e-11 73.6 150 36.0
Lsat_1_v5_gn_6_12040 Lactuca sativa HOM05D002129 ORTHO05D002188 1.1e-10 73.2 102 38.2
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 1.9e-10 72.4 597 22.8
AT1G64320 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 1.9e-10 72.4 633 22.4
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.9e-10 72.4 102 39.2
HanXRQChr17g0535111 Helianthus annuus HOM05D002129 ORTHO05D002188 1.9e-10 72.4 260 28.1
Sopen08g030310 Solanum pennellii HOM05D002129 ORTHO05D002188 1.9e-10 72.4 104 38.5
AL7G47480 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 2.5e-10 72.0 581 24.4
Gohir.D03G081900 Gossypium hirsutum HOM05D002129 ORTHO05D002188 2.5e-10 72.0 453 24.7
RcHm_v2.0_Chr7g0195431 Rosa chinensis HOM05D002129 ORTHO05D002188 2.5e-10 72.0 188 33.5
Thhalv10024082m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 4.3e-10 71.2 596 22.3
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 9.6e-10 70.1 150 36.7
PGSC0003DMG400012303 Solanum tuberosum HOM05D002129 ORTHO05D002188 9.6e-10 70.1 97 38.1
VMungo0251G1783 Vigna mungo HOM05D002129 ORTHO05D002188 9.6e-10 70.1 590 22.5
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 1.3e-09 69.7 330 22.4
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 1.3e-09 69.7 101 40.6
SalBow8G2059 Salvia bowleyana HOM05D002129 ORTHO05D002188 1.6e-09 69.3 97 37.1
BraA09t37126Z Brassica rapa HOM05D002129 ORTHO05D002188 2.1e-09 68.9 222 28.8
FAN04G1700 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.1e-09 68.9 236 25.0
FAN04G3154 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.1e-09 68.9 236 25.0
FAN18G4528 Fragaria x ananassa HOM05D002129 ORTHO05D002188 3.7e-09 68.2 605 20.8
TPR.G3412 Trifolium pratense HOM05D002129 ORTHO05D002188 3.7e-09 68.2 151 31.8
CAN.G532.94 Capsicum annuum HOM05D002129 ORTHO05D002188 4.8e-09 67.8 562 22.4
Atru.chr9.2042 Acer truncatum HOM05D002129 ORTHO05D002188 8.2e-09 67.0 151 33.8
arahy.Tifrunner.gnm1.ann1.Q3GPI2 Arachis hypogaea HOM05D002129 ORTHO05D002188 8.2e-09 67.0 573 20.6
Ciclev10024006m.g Citrus clementina HOM05D002129 ORTHO05D002188 8.2e-09 67.0 434 25.6
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 8.2e-09 67.0 101 40.6
Peaxi162Scf00117g00131 Petunia axillaris HOM05D002129 ORTHO05D002188 8.2e-09 67.0 894 20.7
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 1.1e-08 66.6 640 22.8
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 1.1e-08 66.6 650 22.3
Nitab4.5_0002944g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.4e-08 66.2 854 22.4
Nitab4.5_0006656g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 2.4e-08 65.5 957 20.9
TAR374G1003 Trochodendron aralioides HOM05D002129 ORTHO05D002188 3.1e-08 65.1 277 29.2
Gorai.003G081700 Gossypium raimondii HOM05D002129 ORTHO05D002188 4.0e-08 64.7 880 21.6
arahy.Tifrunner.gnm1.ann1.CM611Z Arachis hypogaea HOM05D002129 ORTHO05D002188 5.3e-08 64.3 867 21.3
FAN18G3989 Fragaria x ananassa HOM05D002129 ORTHO05D002188 5.3e-08 64.3 605 20.5
BcaC04g22558 Brassica carinata HOM05D002129 ORTHO05D002188 6.9e-08 63.9 471 24.2
Ca_17495_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 6.9e-08 63.9 101 33.7
Medtr8g099275 Medicago truncatula HOM05D002129 ORTHO05D002188 6.9e-08 63.9 282 31.2
Nitab4.5_0002213g0050 Nicotiana tabacum HOM05D002129 ORTHO05D002188 9.0e-08 63.5 875 20.9
Glyma.08G021300 Glycine max HOM05D002129 ORTHO05D002188 1.5e-07 62.8 303 25.7
A07p20910 Brassica napus HOM05D002129 ORTHO05D002188 2.0e-07 62.4 405 23.0
CARHR212790 Cardamine hirsuta HOM05D002129 ORTHO05D002188 2.0e-07 62.4 421 25.2
Oeu042387.1 Olea europaea HOM05D002129 ORTHO05D002188 2.0e-07 62.4 711 25.2
Psat7g027680 Pisum sativum HOM05D002129 ORTHO05D002188 2.6e-07 62.0 334 32.9
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 3.4e-07 61.6 477 21.6
vmacro13912 Vaccinium macrocarpon HOM05D002129 ORTHO05D002188 3.4e-07 61.6 1117 26.2
A09p14800 Brassica napus HOM05D002129 ORTHO05D002188 4.5e-07 61.2 500 23.6
Thhalv10028203m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 5.8e-07 60.8 418 22.5
Gorai.004G135400 Gossypium raimondii HOM05D002129 ORTHO05D002188 7.6e-07 60.5 888 26.1
SGA_v2.0_scaffold144G35850 Striga asiatica HOM05D002129 ORTHO05D002188 1.0e-06 60.1 103 34.0
Duzib205G0555 Durio zibethinus HOM05D002129 ORTHO05D002188 1.3e-06 59.7 792 21.3
CANSAT21G2383 Cannabis sativa HOM05D002129 ORTHO05D002188 1.7e-06 59.3 302 23.2
Gohir.A05G349350 Gossypium hirsutum HOM05D002129 ORTHO05D002188 2.2e-06 58.9 154 49.4
ECA233G6022 Erigeron canadensis HOM05D002129 ORTHO05D002188 2.9e-06 58.5 544 22.1
SGA_v2.0_scaffold111G31429 Striga asiatica HOM05D002129 ORTHO05D002188 3.8e-06 58.2 542 22.3
THA.LOC104809341 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 3.8e-06 58.2 103 31.1
CiPaw.11G123900 Carya illinoinensis HOM05D002129 ORTHO05D002188 4.9e-06 57.8 544 26.7
Carub.0007s3359 Capsella rubella HOM05D002129 ORTHO05D002188 6.5e-06 57.4 101 32.7
C09p17920 Brassica napus HOM05D002129 ORTHO05D002188 8.4e-06 57.0 505 21.8
Carub.0007s3360 Capsella rubella HOM05D002129 ORTHO05D002188 8.4e-06 57.0 497 22.5
Carub.0007s3367 Capsella rubella HOM05D002129 ORTHO05D021914 8.4e-06 57.0 101 33.7
THA.LOC104809342 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 8.4e-06 57.0 597 24.1


User provided reference genes

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