Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.2e-111 405.6 203 100.0
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 8.0e-85 317.4 199 77.4
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.5e-83 313.2 199 75.9
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 4.3e-78 295.0 204 72.5
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 8.4e-66 254.2 199 58.8
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 3.2e-65 252.3 203 62.1
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 4.6e-64 248.4 199 58.3
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.6e-64 248.4 199 61.3
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 6.0e-64 248.1 201 61.2
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.0e-63 247.3 199 60.3
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 6.6e-63 244.6 199 60.3
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.5e-62 243.4 206 60.7
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 2.1e-61 239.6 199 56.8
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 2.1e-61 239.6 201 56.2
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 3.6e-61 238.8 205 59.0
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.4e-60 236.9 198 58.6
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 5.2e-60 235.0 201 56.2
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 6.8e-60 234.6 199 58.3
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 6.8e-60 234.6 198 58.6
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.0e-59 233.0 199 59.8
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.4e-59 232.3 198 58.1
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 9.9e-59 230.7 201 55.7
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.3e-58 230.3 201 56.2
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 1.7e-58 229.9 197 55.3
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 2.2e-58 229.6 199 55.8
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 6.4e-58 228.0 197 54.8
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.4e-58 228.0 193 60.1
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.4e-57 226.9 194 58.8
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.4e-57 226.1 188 61.2
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 3.2e-57 225.7 199 56.8
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.2e-57 225.7 199 55.8
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 4.2e-57 225.3 246 47.2
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 5.4e-57 224.9 202 56.4
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.6e-56 223.4 194 58.2
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 6.0e-56 221.5 194 56.7
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.0e-55 220.7 194 57.2
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.3e-55 220.3 198 53.5
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.3e-55 220.3 199 54.8
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 1.7e-55 219.9 195 54.9
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 2.3e-55 219.5 199 56.3
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 3.0e-55 219.2 198 54.5
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 3.0e-55 219.2 197 52.3
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 3.9e-55 218.8 196 58.2
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 8.7e-55 217.6 192 53.6
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 8.7e-55 217.6 200 54.0
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.5e-54 216.9 199 54.3
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 4.3e-54 215.3 196 57.1
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 7.3e-54 214.5 194 56.2
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 1.3e-53 213.8 188 53.7
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 2.1e-53 213.0 196 56.6
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 2.8e-53 212.6 199 54.3
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.8e-53 212.6 199 54.3
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 6.2e-53 211.5 199 53.3
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 6.2e-53 211.5 196 52.0
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 8.1e-53 211.1 192 54.2
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.1e-52 210.7 191 52.4
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.8e-52 209.9 199 55.8
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.8e-52 209.9 199 55.3
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.4e-52 209.5 193 53.9
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 3.1e-52 209.1 199 53.3
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 4.0e-52 208.8 199 51.3
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 2.0e-51 206.5 198 53.0
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 3.4e-51 205.7 194 54.1
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.4e-51 205.7 192 52.1
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 7.6e-51 204.5 199 50.8
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 7.6e-51 204.5 199 51.3
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 9.9e-51 204.1 199 52.3
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.9e-51 204.1 192 52.1
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 2.9e-50 202.6 198 50.5
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 2.9e-50 202.6 199 51.3
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 3.8e-50 202.2 195 50.3
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 4.9e-50 201.8 195 49.7
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 4.9e-50 201.8 199 52.3
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 4.9e-50 201.8 198 51.5
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.9e-50 201.8 184 52.7
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.4e-50 201.4 190 54.2
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 6.4e-50 201.4 201 51.7
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 8.4e-50 201.1 194 53.6
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-49 200.7 197 53.3
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.4e-49 200.3 194 52.6
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.4e-49 199.5 195 49.7
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.4e-49 199.5 201 51.2
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 3.2e-49 199.1 199 51.8
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 4.2e-49 198.7 196 50.0
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 5.4e-49 198.4 198 52.0
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.2e-48 197.2 190 53.2
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.6e-48 196.8 199 51.3
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 2.7e-48 196.1 190 53.2
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 4.6e-48 195.3 198 52.0
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 4.6e-48 195.3 198 50.5
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 4.6e-48 195.3 186 51.1
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.3e-47 193.7 196 51.0
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.3e-47 193.7 200 50.5
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.7e-47 193.4 196 48.5
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.0e-47 192.6 189 51.9
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 5.1e-47 191.8 198 51.5
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 1.9e-46 189.9 194 49.5
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 3.3e-46 189.1 194 49.5
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 9.6e-46 187.6 194 49.0
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.3e-45 187.2 196 51.0
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 3.6e-45 185.7 189 47.1
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.6e-45 185.7 191 47.6
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 8.1e-45 184.5 196 50.5
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-44 184.1 178 54.5
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.1e-44 184.1 195 51.3
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.1e-44 184.1 192 49.0
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 1.4e-44 183.7 192 49.5
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.4e-44 183.7 189 46.6
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.8e-44 183.3 197 46.7
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 2.4e-44 183.0 196 51.0
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 3.1e-44 182.6 198 49.0
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 3.1e-44 182.6 191 46.6
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 3.1e-44 182.6 194 47.4
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.1e-44 182.6 198 47.0
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 3.1e-44 182.6 196 50.0
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 3.1e-44 182.6 196 51.0
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.1e-44 182.6 189 49.7
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 4.0e-44 182.2 174 50.6
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 5.3e-44 181.8 191 46.6
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.2e-43 180.6 194 49.0
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 2.0e-43 179.9 198 46.5
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 2.6e-43 179.5 194 46.4
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 2.6e-43 179.5 196 51.5
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.6e-43 179.5 190 48.4
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 3.4e-43 179.1 196 48.0
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 3.4e-43 179.1 184 51.6
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.5e-43 178.7 186 48.4
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 9.9e-43 177.6 196 49.0
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 9.9e-43 177.6 192 47.9
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 3.8e-42 175.6 149 56.4
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 4.9e-42 175.3 139 58.3
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 4.9e-42 175.3 197 49.2
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 8.4e-42 174.5 149 57.0
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 8.4e-42 174.5 195 48.2
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 5.5e-41 171.8 177 50.8
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 7.1e-41 171.4 195 45.6
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 9.3e-41 171.0 200 45.5
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.6e-40 170.2 191 44.5
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 3.0e-39 166.0 196 44.9
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.7e-39 164.9 197 43.7
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.5e-38 162.9 164 49.4
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.5e-38 162.9 197 43.1
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 3.3e-38 162.5 189 46.6
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 5.6e-38 161.8 181 47.5
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 4.8e-37 158.7 189 42.9
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.8e-37 158.7 166 49.4
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.8e-36 156.8 127 60.6
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.0e-35 153.3 158 49.4
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 7.6e-35 151.4 196 40.3
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 1.3e-34 150.6 196 41.3
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.2e-34 149.8 191 40.3
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 2.9e-34 149.4 196 39.8
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.8e-34 149.1 198 44.4
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 7.1e-33 144.8 145 49.0
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 1.2e-32 144.1 126 55.6
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.2e-32 144.1 165 46.1
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.1e-32 143.3 144 49.3
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.6e-32 142.1 160 48.1
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.0e-31 139.4 191 40.3
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.8e-29 132.9 200 40.5
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.2e-29 131.3 133 49.6
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 5.5e-25 118.6 114 50.9
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 7.9e-24 114.8 195 38.5
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.0e-23 114.4 158 41.8
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.8e-15 87.0 193 30.6
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 2.0e-14 83.6 108 43.5
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.4e-14 81.6 105 42.9
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 6.3e-13 78.6 74 51.4
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.4e-12 77.4 185 33.5
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 4.1e-12 75.9 221 25.3
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.2e-11 74.3 84 42.9
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 2.0e-11 73.6 185 29.7
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 5.9e-11 72.0 75 46.7
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.0e-10 71.2 225 24.9
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 6.5e-10 68.6 85 43.5
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 1.1e-06 57.8 83 41.0
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.1e-06 57.8 95 38.9


User provided reference genes

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