Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 0.0e+00 1264.2 652 100.0
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 1.6e-291 1005.7 648 79.8
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 2.3e-290 1001.9 644 80.6
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 7.3e-289 996.9 645 80.3
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 2.5e-265 918.7 645 74.9
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 4.2e-228 795.0 653 63.4
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 4.2e-228 795.0 653 63.4
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 4.4e-225 785.0 664 62.3
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 2.2e-224 782.7 653 62.3
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 1.1e-223 780.4 653 63.2
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 7.7e-222 774.2 656 62.5
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 5.5e-220 768.1 654 61.3
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 7.5e-217 757.7 653 61.4
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 1.7e-216 756.5 677 59.5
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 1.1e-215 753.8 662 59.7
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 7.0e-215 751.1 651 61.1
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.2e-214 750.4 656 60.2
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 4.5e-214 748.4 650 59.4
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 5.0e-213 745.0 650 59.2
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 6.5e-213 744.6 663 59.6
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 2.5e-212 742.7 661 58.2
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 2.1e-211 739.6 668 58.4
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 2.1e-211 739.6 662 59.1
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 2.7e-211 739.2 654 59.0
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 3.6e-211 738.8 664 58.6
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 4.7e-211 738.4 630 60.8
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 6.1e-211 738.0 650 59.1
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 8.0e-211 737.6 655 58.2
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.4e-210 736.9 659 57.8
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 1.8e-210 736.5 661 59.0
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 2.3e-210 736.1 650 59.4
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.3e-210 736.1 659 58.3
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 4.0e-210 735.3 659 58.1
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 5.2e-210 734.9 658 58.5
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 6.8e-210 734.6 656 59.9
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 8.8e-210 734.2 658 58.5
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 5.7e-209 731.5 654 58.7
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 7.5e-209 731.1 653 58.0
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 1.3e-208 730.3 657 60.1
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 2.4e-207 726.1 659 58.9
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 3.1e-207 725.7 660 58.3
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.4e-207 724.9 660 57.6
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 7.0e-207 724.5 665 57.1
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 9.1e-207 724.2 664 58.0
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 1.2e-206 723.8 651 59.6
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 1.1e-204 717.2 655 56.0
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 1.1e-204 717.2 671 55.7
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 1.5e-204 716.8 652 57.4
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 1.2e-203 713.8 668 56.4
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 1.6e-203 713.4 667 56.2
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 2.8e-203 712.6 662 55.7
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 2.8e-203 712.6 662 55.3
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 2.8e-203 712.6 665 54.7
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 3.6e-203 712.2 668 56.3
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 4.7e-203 711.8 654 58.1
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 2.3e-202 709.5 659 55.1
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 6.8e-202 708.0 655 57.3
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 1.5e-201 706.8 665 55.8
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 2.0e-201 706.4 657 57.5
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 3.7e-200 702.2 659 55.2
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 1.8e-199 699.9 655 56.8
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 1.8e-199 699.9 665 54.6
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 1.8e-199 699.9 667 57.4
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 2.4e-199 699.5 661 54.3
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 5.4e-199 698.4 650 56.6
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 1.7e-197 693.3 661 53.7
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 1.7e-197 693.3 661 53.7
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 1.5e-196 690.3 668 55.1
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 1.9e-196 689.9 653 56.4
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 3.6e-195 685.6 629 56.0
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 3.1e-194 682.6 655 55.0
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 1.5e-193 680.2 654 56.7
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 7.5e-193 677.9 629 55.8
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 7.5e-193 677.9 664 54.8
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 7.5e-193 677.9 679 53.2
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 2.0e-190 669.8 677 52.1
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 3.9e-189 665.6 703 52.8
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 1.1e-188 664.1 656 56.7
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 1.2e-187 660.6 626 54.2
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 2.8e-187 659.4 659 56.0
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 6.8e-186 654.8 715 51.9
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 4.1e-183 645.6 657 52.7
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 4.7e-179 632.1 654 53.8
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 2.9e-176 622.9 538 58.7
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 4.9e-176 622.1 654 52.9
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 3.2e-175 619.4 660 51.2
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 3.0e-173 612.8 629 51.5
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 4.0e-170 602.4 479 63.9
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 1.1e-154 551.2 653 47.2
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 1.2e-153 547.7 668 46.4
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 8.4e-152 541.6 554 50.2
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 1.8e-146 523.9 646 46.9
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 4.0e-146 522.7 422 64.0
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 8.5e-128 461.8 461 56.4
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 2.4e-122 443.7 660 40.5
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 1.2e-121 441.4 662 39.6
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 9.7e-116 421.8 583 41.5
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.3e-115 421.4 430 53.0
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 3.0e-109 400.2 692 36.6
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 1.3e-104 384.8 457 49.0
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 1.9e-95 354.4 607 35.6
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 2.5e-95 354.0 618 34.6
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 2.7e-94 350.5 602 36.7
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.0e-85 322.0 427 46.4
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 1.8e-69 268.1 205 63.9
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.8e-46 191.0 144 65.3
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 4.3e-39 167.2 140 60.7
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 6.2e-38 163.3 348 33.0
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.3e-37 160.2 354 32.5
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.6e-33 147.1 113 62.8
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.5e-28 132.1 347 28.2
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 1.3e-27 129.0 131 47.3
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 1.4e-21 109.0 85 56.5
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.3e-21 107.1 117 48.7
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 2.0e-20 105.1 118 53.4
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.4e-20 104.4 72 58.3
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 4.5e-20 104.0 72 58.3
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 1.0e-19 102.8 72 58.3
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 5.0e-19 100.5 72 55.6
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 8.5e-19 99.8 72 55.6
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.5e-18 98.2 120 42.5
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 3.2e-18 97.8 145 43.4
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 3.0e-16 91.3 85 58.8
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 2.8e-14 84.7 213 33.3
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 8.2e-14 83.2 61 57.4
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 5.3e-13 80.5 61 57.4
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.2e-12 79.3 65 55.4
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.0e-12 78.6 60 65.0
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.3e-11 75.9 60 65.0
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 1.3e-11 75.9 55 52.7
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.9e-11 74.7 55 52.7
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.5e-11 73.6 55 50.9
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 4.2e-10 70.9 90 44.4
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 1.2e-09 69.3 46 69.6
Pp3c19_1150 Physcomitrium patens HOM05D004953 ORTHO05D006193 7.9e-09 66.6 80 41.2


User provided reference genes

Program Settings