Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 3.8e-148 528.1 255 100.0
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 4.6e-138 494.6 255 92.9
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 1.8e-134 482.6 255 91.0
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 4.0e-134 481.5 255 90.6
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 3.4e-133 478.4 255 90.2
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 7.6e-133 477.2 255 90.6
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 3.8e-132 474.9 255 89.0
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 1.1e-131 473.4 255 88.6
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 1.1e-131 473.4 255 87.8
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 1.4e-131 473.0 255 88.6
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.4e-131 473.0 255 88.2
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 1.9e-131 472.6 255 89.4
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 4.2e-131 471.5 255 88.6
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 5.5e-131 471.1 255 88.2
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 9.3e-131 470.3 255 88.2
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 1.2e-130 469.9 255 88.2
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 2.1e-130 469.2 253 88.5
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 2.7e-130 468.8 255 87.5
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 2.7e-130 468.8 255 86.7
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 4.6e-130 468.0 255 87.8
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 4.6e-130 468.0 256 88.7
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 6.0e-130 467.6 255 87.1
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 1.0e-129 466.8 255 86.7
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.3e-129 466.5 255 86.7
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 1.3e-129 466.5 255 89.0
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.3e-129 465.7 255 87.5
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 3.9e-129 464.9 255 87.8
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 3.9e-129 464.9 255 87.1
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 5.1e-129 464.5 255 87.1
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.1e-129 464.5 255 87.1
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 5.1e-129 464.5 255 87.8
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 6.7e-129 464.2 253 87.7
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 1.5e-128 463.0 255 87.1
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.5e-128 462.2 255 86.3
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 2.5e-128 462.2 255 86.7
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 2.5e-128 462.2 256 87.9
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 3.3e-128 461.8 255 86.3
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 4.3e-128 461.5 255 87.5
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 5.6e-128 461.1 255 87.5
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 5.6e-128 461.1 255 87.1
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 9.6e-128 460.3 255 87.5
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 9.6e-128 460.3 256 86.3
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 9.6e-128 460.3 255 85.5
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.6e-127 459.5 257 86.8
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 2.1e-127 459.1 256 86.3
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 2.1e-127 459.1 255 86.3
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 2.8e-127 458.8 255 85.5
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 2.8e-127 458.8 255 86.3
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 3.7e-127 458.4 256 85.5
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 4.8e-127 458.0 255 87.1
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 8.2e-127 457.2 256 86.7
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 8.2e-127 457.2 255 85.5
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 1.1e-126 456.8 255 85.9
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 1.4e-126 456.4 255 85.9
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 2.4e-126 455.7 255 85.9
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 85.5
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 4.0e-126 454.9 253 87.4
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 5.3e-126 454.5 255 86.3
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 6.9e-126 454.1 256 86.3
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 6.9e-126 454.1 256 85.9
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 9.0e-126 453.8 255 85.5
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 1.2e-125 453.4 255 85.1
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 1.5e-125 453.0 256 85.9
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 1.5e-125 453.0 255 85.1
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 1.5e-125 453.0 256 85.5
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 1.5e-125 453.0 255 84.3
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 2.0e-125 452.6 253 86.6
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 2.0e-125 452.6 256 85.9
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 84.7
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 85.9
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 84.7
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 4.5e-125 451.4 253 86.6
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 4.5e-125 451.4 253 86.6
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 85.5
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 7.6e-125 450.7 253 86.2
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 7.6e-125 450.7 255 84.3
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 7.6e-125 450.7 258 84.9
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 1.0e-124 450.3 254 83.5
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.7e-124 449.5 256 85.5
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 2.2e-124 449.1 256 85.2
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 2.2e-124 449.1 255 84.3
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 2.9e-124 448.7 253 86.6
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 4.9e-124 448.0 256 85.2
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 4.9e-124 448.0 253 85.0
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 4.9e-124 448.0 256 85.2
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 1.1e-123 446.8 254 83.1
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 1.4e-123 446.4 254 83.1
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 1.9e-123 446.0 255 84.3
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 2.5e-123 445.7 255 84.3
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 2.5e-123 445.7 255 84.3
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.2e-123 444.9 255 83.1
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 7.1e-123 444.1 255 83.5
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 1.6e-122 443.0 253 85.4
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.7e-122 442.2 255 82.7
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 7.9e-122 440.7 253 82.6
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 1.0e-121 440.3 255 84.3
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 5.1e-121 438.0 253 81.8
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 6.7e-121 437.6 306 71.9
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 8.7e-121 437.2 252 84.5
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 8.7e-121 437.2 252 84.5
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.5e-120 436.4 262 81.7
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.9e-120 436.0 255 81.6
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 2.5e-120 435.6 257 81.3
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 4.3e-120 434.9 255 82.7
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 5.7e-120 434.5 257 80.5
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 2.4e-118 429.1 256 80.5
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 9.0e-118 427.2 255 80.8
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 3.8e-116 421.8 283 73.9
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 3.2e-115 418.7 240 85.0
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 4.2e-115 418.3 250 78.4
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 2.1e-114 416.0 294 71.8
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 2.7e-114 415.6 238 80.7
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 8.8e-113 410.6 240 82.9
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 3.1e-110 402.1 267 74.9
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 4.5e-109 398.3 219 86.3
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 6.5e-108 394.4 230 80.0
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 7.2e-107 391.0 260 76.2
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 3.0e-105 385.6 229 77.7
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 3.9e-105 385.2 255 75.7
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 5.1e-105 384.8 253 71.9
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.0e-104 382.9 260 73.8
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.8e-103 379.0 250 71.6
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.7e-103 378.6 260 73.8
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 1.2e-101 373.6 319 62.1
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.5e-101 373.2 250 71.2
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.0e-101 372.9 247 71.7
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 5.9e-101 371.3 255 72.9
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 3.8e-100 368.6 200 86.0
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 1.2e-98 363.6 249 70.7
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 8.8e-97 357.5 240 70.4
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.3e-92 343.6 240 72.9
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 5.2e-89 331.6 250 69.2
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.0e-84 317.4 162 93.2
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 1.0e-84 317.4 160 93.1
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 2.3e-81 306.2 248 58.5
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 6.8e-81 304.7 162 86.4
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 9.1e-78 294.3 166 85.5
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 2.0e-77 293.1 201 72.6
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 5.9e-77 291.6 285 58.6
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 1.6e-74 283.5 162 85.2
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 5.2e-73 278.5 234 53.8
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 6.8e-73 278.1 171 78.9
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.1e-62 244.2 268 52.6
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 1.9e-59 233.4 135 82.2
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 3.1e-57 226.1 118 90.7
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 3.2e-54 216.1 116 88.8
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 3.9e-52 209.1 238 44.1
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 7.6e-48 194.9 102 91.2
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 1.9e-46 190.3 121 77.7
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 9.2e-46 188.0 109 83.5
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 4.6e-45 185.7 165 61.8
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 3.1e-41 172.9 211 45.0
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 2.0e-40 170.2 84 90.5
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 1.7e-39 167.2 83 89.2
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 9.3e-38 161.4 89 84.3
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.0e-36 157.9 83 88.0
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.9e-35 153.7 89 80.9
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 1.9e-35 153.7 100 73.0
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.3e-35 152.5 89 79.8
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.2e-34 148.7 89 78.7
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.4e-33 147.5 75 89.3
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 4.4e-32 142.5 81 82.7
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.6e-32 141.7 81 82.7
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.4e-30 136.7 75 84.0
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.4e-30 136.7 75 84.0
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.4e-30 136.7 75 84.0
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.4e-30 136.7 75 84.0
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.2e-30 136.3 81 79.0
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 3.2e-30 136.3 90 73.3
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 9.3e-30 134.8 75 82.7
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.0e-28 129.8 75 80.0
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 6.6e-28 128.6 84 73.8
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 5.6e-27 125.6 76 78.9
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.3e-26 124.4 71 81.7
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 1.2e-24 117.9 82 72.0
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 1.3e-10 71.2 49 65.3
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 1.6e-10 70.9 42 78.6
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 2.5e-06 57.0 29 93.1


User provided reference genes

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