Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 0.0e+00 1109.0 574 100.0
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 2.2e-236 822.4 586 74.7
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.2e-213 746.9 463 82.3
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 9.8e-205 717.2 567 68.8
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.5e-189 666.8 596 60.7
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.4e-189 665.2 596 60.6
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.3e-188 663.7 596 59.4
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 8.4e-188 661.0 566 61.5
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 8.4e-188 661.0 600 59.3
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.2e-187 659.1 600 59.0
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 5.4e-187 658.3 593 59.9
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 7.1e-187 657.9 583 61.2
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 3.9e-185 652.1 585 60.9
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 3.9e-185 652.1 575 60.2
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 4.3e-184 648.7 579 62.3
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 7.3e-184 647.9 587 58.8
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 6.2e-183 644.8 580 60.0
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 1.8e-182 643.3 576 60.8
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 5.3e-182 641.7 589 61.1
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 9.0e-182 641.0 609 58.6
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 1.2e-181 640.6 572 62.8
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 1.5e-181 640.2 573 60.7
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.5e-181 640.2 576 61.1
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 1.5e-181 640.2 564 62.6
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 2.6e-181 639.4 584 60.4
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 9.9e-181 637.5 576 59.7
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.3e-180 637.1 576 59.5
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.7e-180 636.7 591 57.0
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 2.2e-180 636.3 579 59.4
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 2.9e-180 636.0 591 58.4
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 4.9e-180 635.2 606 57.6
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 4.9e-180 635.2 526 62.0
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 1.1e-179 634.0 571 61.1
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 3.2e-179 632.5 586 60.4
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 7.1e-179 631.3 580 59.5
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 2.1e-178 629.8 575 59.1
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 6.0e-178 628.2 578 58.8
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 6.0e-178 628.2 573 59.3
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 1.0e-177 627.5 592 57.1
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 1.3e-177 627.1 583 60.9
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 2.3e-177 626.3 566 59.7
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 3.9e-177 625.5 578 60.4
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.9e-177 625.5 576 58.9
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 6.7e-177 624.8 602 58.5
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 1.5e-176 623.6 561 62.7
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 3.3e-176 622.5 571 58.5
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 7.4e-176 621.3 582 58.8
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 9.6e-176 620.9 601 58.1
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.3e-175 620.5 578 58.3
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 2.8e-175 619.4 603 56.1
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 3.6e-175 619.0 565 59.5
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 4.8e-175 618.6 590 58.8
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 6.2e-175 618.2 592 59.5
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 1.1e-174 617.5 557 61.4
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 1.8e-174 616.7 580 60.5
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 2.4e-174 616.3 586 56.3
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.1e-174 615.9 604 57.1
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 3.1e-174 615.9 571 57.4
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 5.3e-174 615.1 572 58.2
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 6.9e-174 614.8 570 59.1
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 9.0e-174 614.4 614 54.4
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 1.2e-173 614.0 580 59.0
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.0e-173 613.2 581 57.5
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 3.4e-173 612.5 591 57.0
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.7e-172 610.1 579 58.7
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 3.8e-172 609.0 578 59.2
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 6.4e-172 608.2 588 57.3
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 8.4e-172 607.8 575 57.4
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 8.4e-172 607.8 606 56.3
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.1e-171 607.4 582 57.9
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 1.1e-171 607.4 571 57.6
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 4.2e-171 605.5 566 60.6
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 5.5e-171 605.1 469 65.2
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 5.5e-171 605.1 567 59.8
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 7.1e-171 604.7 591 57.0
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 7.1e-171 604.7 625 54.1
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 9.3e-171 604.4 572 57.5
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 2.1e-170 603.2 573 56.5
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 6.0e-170 601.7 615 55.4
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 6.0e-170 601.7 585 55.7
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.0e-169 600.9 549 58.1
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 1.8e-169 600.1 618 55.5
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.3e-169 599.7 575 56.9
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.0e-169 599.4 381 81.6
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 3.9e-169 599.0 543 60.4
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 5.1e-169 598.6 591 56.7
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 6.7e-169 598.2 579 56.5
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 6.7e-169 598.2 575 57.4
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.1e-168 597.4 587 57.1
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.9e-168 596.7 585 57.9
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 4.3e-168 595.5 574 56.1
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 1.3e-167 594.0 489 64.8
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 4.8e-167 592.0 570 58.6
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 2.4e-166 589.7 559 57.4
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 6.9e-166 588.2 593 57.3
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 4.5e-165 585.5 530 60.9
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 4.5e-165 585.5 553 59.9
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 6.5e-164 581.6 661 50.2
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 8.4e-164 581.3 598 52.7
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 1.1e-163 580.9 636 54.2
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.9e-163 580.1 577 54.9
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.9e-163 580.1 495 61.2
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 2.5e-163 579.7 638 51.6
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 2.5e-163 579.7 571 57.4
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 3.2e-163 579.3 627 53.4
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 9.3e-163 577.8 569 53.1
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 9.3e-163 577.8 574 56.4
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 6.7e-161 571.6 571 55.9
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 1.5e-160 570.5 571 55.7
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 3.3e-160 569.3 601 52.4
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 4.8e-159 565.5 571 54.3
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 8.2e-159 564.7 583 52.8
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 8.2e-159 564.7 571 54.3
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 8.2e-159 564.7 594 54.7
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 4.1e-158 562.4 571 54.3
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 5.3e-158 562.0 560 54.5
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 6.9e-158 561.6 576 53.8
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.9e-158 561.6 564 55.7
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.3e-156 557.4 540 57.0
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 8.5e-156 554.7 569 54.8
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 3.2e-155 552.7 571 55.5
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.2e-155 552.7 567 54.9
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 4.2e-155 552.4 560 55.4
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 7.2e-155 551.6 558 55.2
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 2.7e-154 549.7 568 54.4
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.6e-154 548.9 578 54.7
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.0e-153 547.7 614 52.6
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.3e-152 542.7 488 61.1
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.7e-152 541.2 604 51.7
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 4.1e-150 535.8 577 51.3
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 9.1e-150 534.6 542 55.2
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 2.5e-147 526.6 530 55.8
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 9.4e-147 524.6 528 54.5
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 1.8e-145 520.4 550 53.3
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.5e-141 507.3 543 52.5
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 4.5e-141 505.8 619 48.8
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 7.4e-136 488.4 541 50.8
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 3.7e-135 486.1 571 50.4
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.3e-132 477.6 559 49.2
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 5.5e-131 472.2 371 63.3
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.2e-130 471.1 573 47.6
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.3e-127 461.1 443 56.4
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 3.4e-112 409.8 336 64.0
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 9.2e-110 401.7 390 58.7
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 6.6e-100 369.0 660 35.9
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 8.0e-98 362.1 337 59.1
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 8.3e-95 352.1 314 60.2
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 2.5e-83 313.9 370 49.5
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 1.3e-60 238.4 163 73.6
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.9e-54 218.0 268 50.7
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 3.2e-46 190.7 223 53.4
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 1.2e-45 188.7 226 46.0
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 2.1e-37 161.4 138 63.0
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 1.8e-33 148.3 386 29.8
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 2.6e-32 144.4 482 24.9
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 5.0e-31 140.2 167 50.3
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 1.1e-30 139.0 547 23.8
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 2.6e-19 101.3 118 50.8
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 3.1e-17 94.4 103 53.4
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 1.2e-16 92.4 86 52.3
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 2.0e-16 91.7 101 46.5
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 7.7e-16 89.7 78 66.7
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 7.7e-16 89.7 156 39.7
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.0e-15 89.4 208 32.7
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 8.5e-15 86.3 71 57.7
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 2.5e-14 84.7 100 49.0
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 3.6e-13 80.9 71 47.9
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 3.6e-13 80.9 62 59.7
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 1.5e-06 58.9 243 28.4
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 3.2e-06 57.8 64 53.1
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 5.5e-06 57.0 92 42.4
AUR62032097 Chenopodium quinoa HOM05D000064 ORTHO05D138450 7.2e-06 56.6 30 86.7
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 7.2e-06 56.6 36 72.2
QL12p041353 Quercus lobata HOM05D002813 ORTHO05D003203 7.2e-06 56.6 305 27.2


User provided reference genes

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