Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.1e-58 228.8 115 100.0
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 5.8e-56 220.7 115 94.8
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.7e-53 211.8 115 92.2
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 7.3e-51 203.8 120 88.3
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 1.5e-40 169.5 115 73.0
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 9.9e-40 166.8 129 66.7
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 3.8e-39 164.9 116 73.3
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.1e-38 163.3 116 70.7
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 4.2e-38 161.4 116 70.7
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 5.5e-38 161.0 116 71.6
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 5.5e-38 161.0 116 70.7
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 9.3e-38 160.2 115 70.4
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 1.2e-37 159.8 116 69.8
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.6e-37 159.5 116 69.8
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.6e-37 159.5 116 69.8
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.6e-37 159.5 115 70.4
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 2.1e-37 159.1 116 68.1
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 2.1e-37 159.1 116 68.1
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 2.1e-37 159.1 115 69.6
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 2.1e-37 159.1 116 69.0
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 2.1e-37 159.1 116 69.0
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 2.7e-37 158.7 115 69.6
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 2.7e-37 158.7 116 70.7
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.7e-37 158.7 116 70.7
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 3.5e-37 158.3 116 70.7
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 4.6e-37 157.9 116 69.8
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 4.6e-37 157.9 116 71.6
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 6.0e-37 157.5 116 69.8
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 7.9e-37 157.1 116 70.7
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.0e-36 156.8 116 70.7
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 1.3e-36 156.4 116 69.0
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.8e-36 156.0 115 66.1
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.8e-36 156.0 116 69.0
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 2.3e-36 155.6 115 68.7
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 3.0e-36 155.2 116 68.1
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 3.9e-36 154.8 116 69.0
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 3.9e-36 154.8 116 69.0
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 5.1e-36 154.5 116 69.8
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 1.1e-35 153.3 115 70.4
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.5e-35 152.9 116 69.8
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.5e-35 152.9 116 69.8
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.5e-35 152.9 116 68.1
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 7.4e-35 150.6 115 68.7
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 7.4e-35 150.6 116 66.4
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 1.3e-34 149.8 113 68.1
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 1.6e-34 149.4 116 67.2
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.1e-34 149.1 116 69.0
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 6.2e-34 147.5 108 71.3
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 1.4e-33 146.4 101 72.3
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.2e-32 143.3 116 65.5
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 2.6e-32 142.1 116 65.5
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 1.3e-31 139.8 116 65.5
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 1.3e-31 139.8 116 64.7
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.3e-31 139.8 116 65.5
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 1.7e-31 139.4 118 62.7
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 2.2e-31 139.0 159 50.9
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.2e-31 139.0 116 63.8
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 3.8e-31 138.3 116 64.7
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 4.9e-31 137.9 116 63.8
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 8.4e-31 137.1 116 62.9
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 8.4e-31 137.1 116 62.9
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 1.4e-30 136.3 116 63.8
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 2.5e-30 135.6 114 64.0
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 3.2e-30 135.2 118 61.9
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.2e-30 134.8 117 61.5
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 4.2e-30 134.8 114 64.0
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 4.2e-30 134.8 116 62.1
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 4.2e-30 134.8 116 62.1
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 4.2e-30 134.8 116 62.1
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 5.5e-30 134.4 114 63.2
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 7.1e-30 134.0 118 61.9
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 7.1e-30 134.0 114 63.2
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 9.3e-30 133.7 90 75.6
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 9.3e-30 133.7 118 62.7
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.1e-29 132.5 116 63.8
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 3.5e-29 131.7 116 63.8
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.5e-29 131.7 118 61.9
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 4.6e-29 131.3 116 62.9
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 6.0e-29 131.0 114 62.3
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 6.0e-29 131.0 114 61.4
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 7.9e-29 130.6 119 61.3
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.0e-28 130.2 178 46.1
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.3e-28 129.8 118 59.3
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.3e-28 129.8 118 59.3
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.8e-28 129.4 117 59.8
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 3.0e-28 128.6 118 60.2
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 3.0e-28 128.6 114 57.0
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 3.9e-28 128.3 115 59.1
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 6.7e-28 127.5 118 61.0
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 6.7e-28 127.5 118 61.0
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 6.7e-28 127.5 113 62.8
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 8.7e-28 127.1 116 60.3
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.1e-27 126.7 118 58.5
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.5e-27 126.3 115 60.0
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 1.9e-27 125.9 119 61.3
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.3e-27 125.2 113 61.9
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 3.3e-27 125.2 113 61.9
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 5.7e-27 124.4 116 60.3
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 7.4e-27 124.0 118 61.0
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 7.4e-27 124.0 117 60.7
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.6e-26 122.9 113 61.1
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 3.7e-26 121.7 142 51.4
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 4.8e-26 121.3 118 55.9
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 4.8e-26 121.3 116 56.0
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 6.3e-26 120.9 114 59.6
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 6.3e-26 120.9 114 59.6
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 1.1e-25 120.2 120 55.0
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.8e-25 119.4 114 53.5
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.4e-25 119.0 91 68.1
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 3.1e-25 118.6 116 58.6
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 4.1e-25 118.2 116 56.9
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 6.9e-25 117.5 114 57.0
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 9.0e-25 117.1 117 59.0
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.5e-24 116.3 116 57.8
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.5e-24 116.3 117 59.8
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 2.0e-24 115.9 119 60.5
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 7.6e-24 114.0 115 56.5
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 1.3e-23 113.2 118 57.6
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 2.9e-23 112.1 76 71.1
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 3.8e-23 111.7 101 59.4
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 5.0e-23 111.3 102 58.8
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 5.0e-23 111.3 84 66.7
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.5e-23 110.9 116 56.9
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 8.4e-23 110.5 116 53.4
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.1e-22 110.2 124 54.0
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.5e-22 109.0 116 50.9
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 3.2e-22 108.6 116 56.0
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 4.2e-22 108.2 116 57.8
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 2.1e-21 105.9 54 94.4
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 2.1e-21 105.9 120 50.8
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 3.5e-21 105.1 117 53.0
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 1.0e-20 103.6 112 51.8
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.0e-20 103.6 112 51.8
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 1.0e-20 103.6 112 51.8
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.8e-20 102.8 54 88.9
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 2.3e-20 102.4 116 51.7
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 3.0e-20 102.1 60 80.0
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.0e-20 102.1 76 67.1
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 5.1e-20 101.3 111 51.4
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 1.1e-19 100.1 66 71.2
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.9e-19 99.4 118 51.7
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 3.3e-19 98.6 143 44.1
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 3.3e-19 98.6 116 51.7
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 4.3e-19 98.2 114 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 9.7e-19 97.1 117 50.4
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 9.7e-19 97.1 122 50.0
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 1.6e-18 96.3 138 47.1
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 6.3e-18 94.4 228 35.1
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.3e-18 94.4 60 76.7
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 6.3e-18 94.4 111 54.1
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.1e-17 93.6 84 58.3
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.4e-17 92.4 135 44.4
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 5.3e-17 91.3 118 49.2
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 2.0e-16 89.4 89 60.7
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.0e-16 89.4 84 56.0
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 3.4e-16 88.6 62 67.7
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 4.5e-16 88.2 57 73.7
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 5.0e-15 84.7 53 73.6
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 2.5e-14 82.4 63 61.9
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 4.2e-14 81.6 98 48.0
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 5.5e-14 81.3 85 54.1
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 1.4e-12 76.6 53 71.7
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 2.3e-12 75.9 116 44.8
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.0e-11 72.8 50 72.0
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 7.4e-11 70.9 51 68.6
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 9.7e-11 70.5 59 52.5
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 2.8e-10 68.9 84 47.6
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 1.1e-09 67.0 116 40.5
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 3.4e-08 62.0 126 38.1
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 2.9e-07 58.9 41 65.9
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 6.5e-07 57.8 31 77.4
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 4.2e-06 55.1 57 50.9


User provided reference genes

Program Settings