Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 3.5e-206 721.5 390 100.0
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.0e-136 490.7 395 72.7
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 6.1e-89 332.0 337 60.2
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.9e-80 302.8 390 49.7
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.0e-79 300.4 393 49.4
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 2.2e-78 297.0 402 47.8
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.1e-77 294.7 390 49.5
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 2.0e-76 290.4 389 49.6
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.9e-75 286.6 391 49.6
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 3.6e-73 279.6 400 48.5
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 3.9e-72 276.2 408 48.3
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 6.7e-72 275.4 441 45.6
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 2.0e-71 273.9 402 47.8
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 2.6e-71 273.5 395 48.6
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 4.4e-71 272.7 400 47.0
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.2e-70 270.4 386 47.4
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 6.3e-70 268.9 400 46.5
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 8.2e-70 268.5 420 47.4
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 3.1e-69 266.5 394 45.7
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 9.1e-69 265.0 396 44.2
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.2e-68 264.6 389 47.3
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 3.5e-68 263.1 403 48.1
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 7.7e-68 261.9 391 47.8
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.0e-67 261.5 394 45.4
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.3e-67 261.2 397 47.9
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.2e-67 260.4 392 45.4
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 5.0e-67 259.2 393 45.5
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 8.5e-67 258.5 398 45.2
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.5e-66 257.7 387 43.2
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.9e-66 257.3 392 45.4
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.9e-66 257.3 385 48.8
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 5.5e-66 255.8 401 44.9
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 9.4e-66 255.0 398 45.0
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 1.2e-65 254.6 396 47.5
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.2e-65 254.6 395 45.1
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 2.1e-65 253.8 390 44.6
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 2.1e-65 253.8 393 43.8
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 8.0e-65 251.9 389 46.3
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 5.2e-64 249.2 393 45.0
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.3e-63 246.5 395 44.1
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.4e-63 246.1 382 47.4
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 4.4e-63 246.1 393 43.3
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 5.7e-63 245.7 419 45.8
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 7.5e-63 245.4 396 45.7
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 9.7e-63 245.0 384 46.4
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.3e-62 244.6 395 47.1
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 2.8e-62 243.4 431 45.5
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.8e-62 243.4 396 44.7
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.4e-61 241.1 425 42.6
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.8e-61 240.7 388 45.1
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 3.1e-61 240.0 392 45.4
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 3.1e-61 240.0 394 43.1
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.7e-60 236.9 381 46.2
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 5.9e-60 235.7 391 43.0
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 5.9e-60 235.7 385 46.0
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 7.7e-60 235.3 341 49.6
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.0e-59 235.0 377 44.3
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.7e-59 234.2 393 42.0
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 2.2e-59 233.8 399 44.1
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 2.9e-59 233.4 402 43.0
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 2.9e-59 233.4 422 43.1
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 1.5e-58 231.1 396 43.2
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.5e-58 230.3 341 50.1
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 5.5e-58 229.2 396 44.4
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 7.2e-58 228.8 402 44.3
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 9.4e-58 228.4 385 45.2
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 9.4e-58 228.4 399 43.9
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.2e-57 228.0 400 43.0
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 4.7e-57 226.1 381 43.6
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 5.2e-56 222.6 399 42.4
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 6.8e-56 222.2 402 43.8
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 2.0e-55 220.7 442 41.9
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 9.8e-55 218.4 399 42.1
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 9.8e-55 218.4 384 43.5
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 4.1e-53 213.0 383 44.1
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 7.0e-53 212.2 336 44.0
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 7.0e-53 212.2 273 50.5
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 3.5e-52 209.9 392 45.2
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 7.7e-52 208.8 392 45.2
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 1.0e-51 208.4 392 39.8
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 6.5e-51 205.7 410 42.2
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 1.5e-50 204.5 368 43.8
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.6e-49 201.1 396 43.7
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.6e-49 201.1 332 42.5
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 2.7e-49 200.3 380 41.8
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 8.0e-49 198.7 410 42.2
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.8e-48 197.6 397 41.3
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 3.0e-48 196.8 373 41.0
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 6.8e-48 195.7 401 41.9
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.2e-47 194.9 407 41.0
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.3e-46 191.4 394 39.8
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.7e-46 191.0 404 40.6
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.1e-45 188.3 361 41.0
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 1.1e-45 188.3 375 40.0
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 1.8e-45 187.6 397 40.3
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.4e-45 187.2 387 40.6
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 2.4e-45 187.2 416 38.9
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 2.4e-45 187.2 368 41.3
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 3.1e-45 186.8 394 40.6
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 3.1e-45 186.8 394 40.6
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 7.0e-45 185.7 420 38.8
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 7.0e-45 185.7 398 39.4
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.6e-44 184.5 432 39.4
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 2.0e-44 184.1 432 40.3
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 5.9e-44 182.6 403 40.4
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 5.9e-44 182.6 403 40.4
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 5.9e-44 182.6 403 40.4
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.0e-43 181.8 366 42.1
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.0e-43 181.8 366 42.1
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 3.8e-43 179.9 419 37.9
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 3.8e-43 179.9 184 59.2
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.9e-42 177.6 224 51.8
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 3.6e-41 173.3 415 39.5
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 2.0e-39 167.5 375 41.3
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 3.4e-39 166.8 412 38.1
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 9.8e-39 165.2 408 40.0
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 1.3e-38 164.9 400 39.5
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 2.9e-38 163.7 387 38.8
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 8.3e-38 162.2 396 39.4
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.1e-37 161.8 397 38.3
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.4e-37 161.4 412 35.9
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 3.2e-37 160.2 404 38.9
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 3.2e-37 160.2 404 38.9
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 7.0e-37 159.1 354 37.9
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 4.6e-36 156.4 203 47.8
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.5e-34 151.4 374 35.6
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 2.5e-34 150.6 199 50.8
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 4.3e-34 149.8 261 44.8
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 2.1e-33 147.5 431 33.4
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 1.0e-32 145.2 390 34.6
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.4e-32 144.8 410 34.6
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 4.0e-32 143.3 366 38.0
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 4.4e-31 139.8 361 35.7
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 3.5e-28 130.2 385 34.3
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 7.3e-26 122.5 418 33.5
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 9.5e-26 122.1 257 41.6
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 1.2e-25 121.7 276 38.8
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 8.1e-17 92.4 188 44.1
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 6.8e-16 89.4 325 32.0
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 4.4e-15 86.7 216 34.7
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 2.9e-14 84.0 141 39.0
EL10As5g23492 Beta vulgaris HOM05D005109 ORTHO05D006084 6.2e-09 66.2 60 66.7
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 1.7e-06 58.2 150 36.7


User provided reference genes

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