Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 3.5e-227 791.2 371 100.0
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 9.4e-225 783.1 371 98.9
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 7.3e-201 703.7 373 86.6
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 4.9e-197 691.0 375 84.8
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 2.1e-195 685.6 375 85.1
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.9e-193 679.1 372 83.9
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 5.2e-191 671.0 372 82.8
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.7e-189 666.0 391 80.1
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 4.9e-189 664.5 373 81.0
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 1.4e-188 662.9 372 80.4
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 9.2e-188 660.2 371 80.6
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 2.7e-187 658.7 372 81.5
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.3e-186 656.4 373 79.6
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 1.3e-186 656.4 374 80.7
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 1.7e-186 656.0 373 81.2
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.3e-186 655.6 373 79.6
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 6.6e-186 654.1 372 80.4
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 8.6e-186 653.7 373 79.4
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 3.3e-185 651.7 370 80.3
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 2.1e-184 649.0 373 79.6
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 6.2e-184 647.5 373 79.6
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 1.4e-183 646.4 370 80.3
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 3.1e-183 645.2 371 79.5
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 6.8e-183 644.0 379 78.9
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.2e-182 643.3 369 79.9
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.2e-182 643.3 374 79.1
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 1.2e-182 643.3 366 79.8
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 1.5e-182 642.9 373 79.6
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 7.6e-182 640.6 383 78.1
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 7.6e-182 640.6 371 79.0
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 1.3e-181 639.8 372 79.3
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 1.3e-181 639.8 373 77.7
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 2.9e-181 638.6 371 78.7
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 4.9e-181 637.9 369 79.7
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 6.4e-181 637.5 369 79.7
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 8.4e-181 637.1 371 79.0
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 1.4e-180 636.3 373 79.1
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 3.2e-180 635.2 374 78.1
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 3.2e-180 635.2 372 78.2
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 4.2e-180 634.8 371 78.2
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 4.2e-180 634.8 372 78.5
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 5.4e-180 634.4 368 78.0
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 7.1e-180 634.0 373 79.1
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 1.6e-179 632.9 367 79.0
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 2.1e-179 632.5 372 77.2
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 6.0e-179 630.9 373 76.7
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 7.8e-179 630.6 373 76.4
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 1.7e-178 629.4 372 78.8
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 5.1e-178 627.9 372 76.1
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 6.6e-178 627.5 368 77.7
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.3e-176 623.2 373 76.7
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 2.8e-176 622.1 374 75.7
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.8e-176 622.1 373 76.4
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 8.1e-176 620.5 373 74.3
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.1e-175 620.2 370 76.2
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 1.4e-175 619.8 373 75.9
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 1.8e-175 619.4 372 76.9
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 4.0e-175 618.2 374 76.5
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 4.0e-175 618.2 367 76.3
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 4.0e-175 618.2 371 75.7
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 5.3e-175 617.8 372 75.0
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 1.2e-174 616.7 371 77.1
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 1.5e-174 616.3 373 75.3
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 3.4e-174 615.1 378 75.1
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 4.4e-174 614.8 373 74.3
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 4.4e-174 614.8 373 74.0
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 5.8e-174 614.4 369 75.6
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 4.9e-173 611.3 372 74.7
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 6.4e-173 610.9 371 76.0
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.1e-172 610.1 373 74.0
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 5.4e-172 607.8 357 77.9
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 7.1e-172 607.4 367 74.7
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 9.3e-172 607.1 367 75.7
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 2.1e-171 605.9 371 74.4
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 2.1e-171 605.9 372 74.2
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 2.1e-171 605.9 371 73.9
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 1.3e-170 603.2 369 75.1
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 3.0e-170 602.1 372 74.7
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 5.1e-170 601.3 366 75.7
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 6.6e-170 600.9 366 74.6
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 1.5e-169 599.7 371 74.4
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 1.5e-169 599.7 374 73.0
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 2.5e-169 599.0 371 73.9
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 5.6e-169 597.8 458 63.8
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 9.6e-169 597.0 372 74.2
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 1.3e-168 596.7 372 73.9
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 1.3e-168 596.7 367 74.4
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 2.8e-168 595.5 370 74.3
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 3.6e-168 595.1 401 69.3
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 3.6e-168 595.1 383 72.3
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 4.8e-168 594.7 367 73.6
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 4.8e-168 594.7 367 73.6
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.4e-167 592.4 344 78.8
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 1.5e-166 589.7 368 73.9
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 4.5e-166 588.2 368 74.2
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 5.8e-166 587.8 420 67.4
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 4.9e-165 584.7 380 73.2
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 2.4e-164 582.4 372 71.2
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 5.5e-164 581.3 369 72.1
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 7.1e-164 580.9 373 71.6
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 3.5e-163 578.6 373 72.1
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 3.0e-162 575.5 346 77.5
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 7.4e-161 570.9 403 68.0
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 2.1e-160 569.3 406 67.5
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 5.3e-159 564.7 374 68.4
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 1.5e-158 563.1 371 70.9
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 1.7e-157 559.7 372 71.0
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 6.5e-157 557.8 371 67.1
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 2.8e-152 542.3 370 69.5
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 8.2e-152 540.8 371 66.3
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 1.4e-151 540.0 373 66.2
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 3.1e-151 538.9 370 65.9
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.5e-150 536.6 360 67.8
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 1.3e-149 533.5 374 64.7
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 4.2e-148 528.5 304 79.9
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 2.1e-147 526.2 365 66.3
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 1.4e-140 503.4 411 59.4
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 8.5e-133 477.6 293 72.4
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 4.2e-132 475.3 371 63.6
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 1.4e-130 470.3 388 59.0
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 9.4e-124 447.6 274 75.2
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 4.4e-105 385.6 385 50.9
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 7.5e-105 384.8 344 57.8
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.8e-103 380.2 216 78.2
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.8e-99 366.3 222 74.8
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.8e-98 361.7 250 69.2
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 8.9e-98 361.3 373 52.0
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 3.4e-97 359.4 380 48.2
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.4e-95 354.0 221 74.2
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.1e-87 327.8 381 45.1
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 3.0e-85 319.7 403 43.9
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.8e-83 313.2 196 75.0
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.9e-80 302.4 165 80.0
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 7.3e-76 288.5 170 77.1
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 4.4e-65 252.7 171 71.9
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 5.6e-44 182.6 477 28.3
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 2.8e-43 180.3 93 81.7
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.3e-37 161.4 129 67.4
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 1.2e-33 148.3 109 65.1
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 5.9e-33 146.0 102 67.6
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 9.3e-31 138.7 78 80.8
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 5.1e-29 132.9 92 69.6
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 1.7e-24 117.9 335 27.8
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.7e-16 91.3 163 35.6
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 2.7e-14 84.0 43 88.4
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 4.7e-14 83.2 47 78.7
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 3.9e-13 80.1 45 77.8
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 8.8e-13 79.0 46 78.3
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 2.8e-11 73.9 40 80.0
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 9.4e-07 58.9 30 66.7
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 8.0e-06 55.8 29 72.4


User provided reference genes

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