Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1974.1 988 100.0
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1815.8 988 91.6
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1771.1 988 89.4
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1698.3 988 86.7
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1632.1 989 81.5
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1625.9 989 81.1
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1619.4 989 80.5
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1617.8 986 81.0
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1617.1 989 80.4
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1615.9 989 80.9
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1614.4 990 80.5
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1613.6 984 80.9
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1611.3 989 80.5
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1611.3 989 79.6
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1609.3 989 80.4
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1607.4 989 80.4
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1606.3 989 80.0
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1605.5 989 80.0
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1605.5 989 79.9
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1605.1 989 80.0
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1603.6 989 80.2
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1603.2 990 80.4
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1602.4 989 80.2
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1600.9 998 79.8
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1600.9 989 80.0
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1598.2 989 79.9
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1596.6 984 80.2
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1596.3 989 79.9
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1593.2 989 78.9
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1591.6 990 79.5
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1591.2 989 78.8
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1589.3 990 79.6
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1587.4 1013 77.9
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1585.9 990 79.6
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1585.1 987 79.5
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1584.7 1013 77.8
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1583.2 1015 78.8
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1582.4 990 78.6
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1580.5 989 79.4
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1578.9 997 79.0
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1578.9 1005 78.8
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1578.9 990 78.9
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1577.0 990 78.4
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1570.8 996 78.5
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1570.1 989 78.1
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1569.7 988 77.8
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1568.5 995 77.5
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1567.0 1013 76.9
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1565.4 991 78.1
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1563.5 992 77.7
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1563.1 985 78.1
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1562.0 988 77.9
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1562.0 989 78.0
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1561.6 990 77.7
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1561.2 1026 76.3
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1560.0 991 77.8
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1559.3 986 77.7
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1556.2 991 77.5
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1555.8 990 78.7
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1554.3 990 77.6
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1554.3 986 76.9
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1553.5 990 77.5
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1553.5 1005 76.5
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1552.7 1002 76.5
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1551.2 992 77.2
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1550.8 990 77.1
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1548.9 1077 74.0
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1548.9 993 77.3
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1547.7 995 77.0
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1546.2 989 77.7
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1543.9 988 77.1
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1543.5 985 76.8
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1542.3 998 77.4
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1541.2 1084 71.9
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1539.6 986 77.2
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1537.3 1005 75.9
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1536.2 1007 75.8
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1526.9 895 83.8
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1523.5 990 76.9
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1522.7 986 76.6
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1522.3 990 76.9
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1521.1 931 80.8
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1502.6 1040 72.7
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1502.6 989 76.0
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1487.6 995 73.2
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1483.4 936 78.4
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1478.0 1017 72.8
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1458.7 1027 72.2
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1454.1 992 74.3
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1422.1 918 78.0
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1390.9 844 80.8
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1384.0 993 68.9
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1377.8 994 70.1
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1314.3 817 80.5
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1298.1 789 81.5
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1285.4 849 76.3
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1285.0 802 79.7
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1267.7 792 78.8
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1258.0 952 66.8
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1252.3 794 78.8
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1251.5 994 66.8
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1228.0 759 80.8
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1224.5 772 78.8
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1213.7 763 79.2
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1169.1 989 59.3
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1161.4 991 60.0
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1146.7 778 75.8
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1100.5 762 74.0
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 3.9e-294 1015.0 987 52.8
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 1.5e-282 976.5 790 61.5
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.2e-280 967.6 611 78.4
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 4.7e-279 964.9 647 75.9
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 8.5e-273 944.1 678 70.5
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 3.8e-265 918.7 558 81.7
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.5e-242 842.4 574 73.5
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 5.8e-237 825.1 519 78.8
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 1.1e-235 820.8 611 65.8
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 9.2e-235 817.8 517 78.7
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 7.1e-195 685.3 418 79.7
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 2.3e-161 573.9 336 82.4
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 8.5e-148 528.9 337 76.6
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.1e-138 497.7 282 84.4
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 6.0e-125 453.0 1080 30.6
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 1.8e-113 414.8 249 81.5
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 6.4e-103 379.8 1266 27.0
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.3e-100 372.1 1033 27.5
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 2.5e-99 367.9 230 74.8
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 2.0e-96 358.2 231 72.3
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 5.8e-96 356.7 268 71.6
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 5.6e-91 340.1 207 78.3
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 7.4e-91 339.7 205 77.1
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 7.4e-83 313.2 231 65.8
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 5.3e-81 307.0 178 80.9
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.8e-76 292.0 202 68.8
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 3.9e-76 290.8 300 52.3
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 5.5e-70 270.4 441 37.6
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 4.6e-69 267.3 153 79.1
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.7e-66 257.7 209 61.7
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 4.1e-57 227.6 153 69.9
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 7.7e-56 223.4 127 81.1
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 2.7e-40 171.8 163 57.7
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 1.3e-39 169.5 136 58.8
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.9e-39 168.3 174 59.8
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.1e-37 162.2 106 69.8
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.1e-37 162.2 106 69.8
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.6e-35 155.2 94 77.7
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 1.2e-32 146.4 121 58.7
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 1.2e-32 146.4 88 76.1
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.8e-29 135.2 73 89.0
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 4.9e-26 124.4 114 61.4
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 6.3e-26 124.0 114 61.4
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 4.1e-25 121.3 75 77.3
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.1e-25 121.3 81 70.4
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 2.0e-24 119.0 75 81.3
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 8.6e-23 113.6 98 57.1
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 4.3e-22 111.3 80 77.5
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.2e-21 109.8 92 60.9
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.1e-21 109.0 91 61.5
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 2.7e-16 92.0 52 82.7
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.6e-16 91.3 105 49.5
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 6.0e-16 90.9 54 79.6
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 5.6e-14 84.3 227 27.3
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 7.3e-14 84.0 102 47.1
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 1.2e-13 83.2 87 49.4
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.1e-12 78.6 51 60.8
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 1.9e-09 69.3 159 31.4
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 6.6e-07 60.8 50 58.0
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 7.3e-06 57.4 47 66.0


User provided reference genes

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