Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 2504.6 1303 100.0
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1827.0 1530 67.1
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1788.1 1467 69.5
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1771.1 1528 63.8
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1668.7 1438 65.4
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1553.5 1125 69.6
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1470.7 1235 62.9
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1447.2 1342 60.6
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1443.3 1386 57.4
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1443.3 1386 57.4
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1416.4 1211 61.8
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1401.0 1218 61.0
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1396.7 1403 56.0
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1384.8 1242 59.9
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1375.9 1197 61.2
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1373.6 1209 60.8
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1371.7 1198 59.8
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1365.9 1210 60.3
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1362.8 1280 58.1
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1357.4 1318 57.7
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1354.7 1252 57.4
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1352.8 1341 56.0
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1349.7 1208 58.5
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1344.7 1404 54.3
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1339.3 1468 50.7
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1336.2 1344 54.2
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1330.1 1304 56.1
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1327.0 1370 56.4
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1326.2 1345 53.2
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1325.8 1303 56.5
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1325.1 1340 54.4
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1324.3 1139 61.1
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1323.5 1254 57.8
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1323.1 1195 57.9
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1322.4 1301 56.6
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1321.2 1340 54.3
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1320.8 1428 51.4
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1318.1 1302 56.6
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1318.1 1422 51.6
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1316.2 1324 54.1
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1312.4 1341 54.1
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1307.0 1201 57.5
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1307.0 1273 56.2
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1302.7 1339 53.8
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1298.9 1230 56.7
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1298.1 1230 56.7
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1294.6 1217 57.0
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1292.3 1217 57.2
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1290.0 1299 55.4
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1290.0 1258 54.1
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1286.2 1296 55.0
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1281.9 1340 53.3
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1281.2 1249 56.1
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1278.5 1258 54.1
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1271.5 1218 56.2
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1269.2 1243 55.0
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1268.1 1331 55.8
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1263.4 1260 55.3
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1260.0 1141 57.8
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1260.0 987 63.0
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1252.3 991 63.3
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1251.1 1252 53.4
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1251.1 1202 57.9
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1250.3 1363 50.6
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1247.3 1189 55.8
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1218.8 1197 55.1
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1201.8 1345 50.2
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 1193.7 1198 53.0
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 1181.4 1274 50.5
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 1180.2 1258 50.5
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 1177.9 1275 50.6
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 1174.5 1224 51.5
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 1173.7 1225 51.7
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1170.6 1257 51.2
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1166.0 1209 54.9
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1164.8 1236 51.5
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1156.0 1274 49.9
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 1153.7 1274 49.7
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1149.8 1273 49.5
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 1141.7 1287 48.9
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1135.9 1137 52.8
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 1134.8 1286 49.2
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1128.6 1207 52.5
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1124.4 1288 49.3
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1109.4 1134 51.8
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1087.0 1191 53.1
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 1.6e-306 1056.6 1188 48.0
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 3.5e-306 1055.4 955 59.8
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 6.1e-303 1044.6 1228 48.0
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 1.6e-295 1020.0 723 68.0
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 1.7e-292 1010.0 805 61.6
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 4.9e-292 1008.4 1058 51.3
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 4.9e-276 955.3 724 65.6
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 3.7e-268 929.1 818 59.2
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 1.3e-247 860.9 979 47.4
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 3.4e-245 852.8 991 46.8
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 3.3e-240 836.3 977 46.8
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 4.8e-223 779.2 837 52.9
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 3.0e-201 706.8 996 41.4
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 1.6e-194 684.5 804 50.9
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 8.0e-186 655.6 481 65.5
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 8.9e-177 625.5 793 44.4
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.9e-163 581.3 623 54.9
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 3.1e-153 547.4 446 62.3
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 3.2e-142 510.8 549 53.9
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 7.1e-142 509.6 549 53.7
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 1.2e-136 492.3 713 40.4
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 2.9e-135 487.6 450 53.6
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 1.5e-128 465.3 328 67.4
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 1.8e-124 451.8 328 65.5
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 1.6e-109 402.1 513 48.5
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 8.7e-108 396.4 306 61.8
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.3e-99 367.9 235 75.3
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 2.5e-86 325.1 256 62.9
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 1.5e-78 299.3 545 42.4
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 1.5e-78 299.3 528 42.4
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 1.5e-70 272.7 208 62.5
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 2.8e-66 258.5 206 62.1
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.3e-63 249.6 173 69.4
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 3.6e-53 214.9 723 26.0
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 1.4e-52 213.0 732 25.7
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 3.5e-48 198.4 163 60.7
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 1.3e-47 196.4 145 64.1
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 2.5e-46 192.2 139 66.9
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.8e-44 186.0 115 74.8
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 5.8e-43 181.0 134 66.4
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 5.2e-36 157.9 126 60.3
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 1.2e-35 156.8 691 22.0
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 1.7e-34 152.9 285 41.1
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 2.1e-32 146.0 509 30.1
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 2.7e-32 145.6 178 47.8
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 2.3e-31 142.5 111 65.8
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.2e-29 136.7 132 56.1
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 3.6e-29 135.2 280 35.4
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 4.0e-28 131.7 117 56.4
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 2.0e-27 129.4 85 68.2
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 4.9e-26 124.8 105 55.2
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 4.6e-24 118.2 79 70.9
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 1.1e-22 113.6 102 56.9
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 1.5e-22 113.2 148 45.3
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 5.6e-22 111.3 111 55.9
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 7.3e-22 110.9 75 69.3
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 1.3e-21 110.2 76 63.2
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 3.6e-21 108.6 69 72.5
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 1.4e-20 106.7 111 50.5
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 3.4e-19 102.1 122 51.6
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 4.4e-19 101.7 114 49.1
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 4.6e-16 91.7 76 53.9
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 3.9e-15 88.6 64 60.9
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 1.8e-12 79.7 49 69.4
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 2.4e-12 79.3 188 38.8
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 4.0e-12 78.6 53 67.9
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 9.0e-12 77.4 46 69.6
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 1.7e-10 73.2 86 43.0
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 2.9e-10 72.4 86 46.5
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 8.4e-10 70.9 46 60.9
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 7.1e-09 67.8 101 36.6
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 6.0e-08 64.7 62 53.2
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 1.0e-07 63.9 64 51.6
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 2.3e-07 62.8 81 53.1
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 2.3e-07 62.8 47 57.4
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 3.0e-07 62.4 312 24.4
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 1.1e-06 60.5 129 39.5
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 3.3e-06 58.9 78 46.2


User provided reference genes

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