Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g046150 Amaranthus hybridus HOM05D000306 ORTHO05D000410 1.7e-111 406.0 205 100.0
EL10Ac5g10822 Beta vulgaris HOM05D000306 ORTHO05D000410 1.2e-64 250.4 208 63.9
AUR62008278 Chenopodium quinoa HOM05D000306 ORTHO05D000410 2.3e-63 246.1 203 63.5
AUR62031038 Chenopodium quinoa HOM05D000306 ORTHO05D000410 8.5e-58 227.6 203 59.1
Sc12g0005570 Simmondsia chinensis HOM05D000306 ORTHO05D000410 5.0e-42 175.3 194 49.0
Sabra15G0096700 Salix brachista HOM05D000306 ORTHO05D000410 3.2e-41 172.6 210 47.1
Sabra12G0055100 Salix brachista HOM05D000306 ORTHO05D000410 3.6e-40 169.1 200 48.0
Potri.012G077000 Populus trichocarpa HOM05D000306 ORTHO05D000410 1.4e-39 167.2 200 47.0
Potri.015G071800 Populus trichocarpa HOM05D000306 ORTHO05D000410 2.3e-39 166.4 201 45.3
Manes.06G101400 Manihot esculenta HOM05D000306 ORTHO05D000410 2.6e-38 162.9 210 42.9
PGR044G1217 Punica granatum HOM05D000306 ORTHO05D000410 2.2e-37 159.8 200 45.0
CiPaw.12G023600 Carya illinoinensis HOM05D000306 ORTHO05D000410 8.2e-37 157.9 206 44.7
Hund09409 Selenicereus undatus HOM05D000306 ORTHO05D000410 2.4e-36 156.4 183 50.8
Manes.14G069700 Manihot esculenta HOM05D000306 ORTHO05D000410 9.1e-36 154.5 209 42.1
FAN04G3002 Fragaria x ananassa HOM05D000306 ORTHO05D000410 7.7e-35 151.4 202 45.0
MD06G1180400 Malus domestica HOM05D000306 ORTHO05D000410 1.3e-34 150.6 200 44.0
FAN13G1688 Fragaria x ananassa HOM05D000306 ORTHO05D000410 1.7e-34 150.2 203 44.3
FvH4_5g16470 Fragaria vesca HOM05D000306 ORTHO05D000410 2.9e-34 149.4 202 44.6
Ciclev10019512m.g Citrus clementina HOM05D000306 ORTHO05D000410 3.8e-34 149.1 208 44.2
Eucgr.K02876 Eucalyptus grandis HOM05D000306 ORTHO05D000410 5.0e-34 148.7 209 40.7
Cpa.g.sc110.20 Carica papaya HOM05D000306 ORTHO05D000410 6.5e-34 148.3 194 43.8
FAN08G1052 Fragaria x ananassa HOM05D000306 ORTHO05D000410 2.5e-33 146.4 202 44.1
Thecc.03G005500 Theobroma cacao HOM05D000306 ORTHO05D000410 2.7e-32 142.9 196 43.9
Duzib205G1531 Durio zibethinus HOM05D000306 ORTHO05D000410 1.0e-31 141.0 194 44.3
RcHm_v2.0_Chr7g0179621 Rosa chinensis HOM05D000306 ORTHO05D000410 1.0e-31 141.0 203 43.3
CANSAT80G1526 Cannabis sativa HOM05D000306 ORTHO05D000410 3.0e-31 139.4 193 44.0
Atru.chr9.2413_Atru.chr9.2414 Acer truncatum HOM05D000306 ORTHO05D000410 1.2e-30 137.5 200 38.0
CiPaw.11G030800 Carya illinoinensis HOM05D000306 ORTHO05D000410 1.2e-30 137.5 206 40.8
Dinv09175 Davidia involucrata HOM05D000306 ORTHO05D000410 4.4e-30 135.6 203 41.9
TWI60G0713 Tripterygium wilfordii HOM05D000306 ORTHO05D000410 5.7e-30 135.2 206 39.8
Gohir.A12G276380 Gossypium hirsutum HOM05D000306 ORTHO05D000410 9.7e-30 134.4 196 41.8
Phvul.003G197500 Phaseolus vulgaris HOM05D000306 ORTHO05D000410 2.2e-29 133.3 197 42.1
COL.COLO4_04327 Corchorus olitorius HOM05D000306 ORTHO05D000410 6.3e-29 131.7 196 42.3
TWI81G0031 Tripterygium wilfordii HOM05D000306 ORTHO05D000410 8.2e-29 131.3 206 37.9
Glyma.17G092700 Glycine max HOM05D000306 ORTHO05D000410 3.1e-28 129.4 194 41.2
Gorai.008G297800 Gossypium raimondii HOM05D000306 ORTHO05D000410 3.1e-28 129.4 196 40.8
Duzib084G0932 Durio zibethinus HOM05D000306 ORTHO05D000410 4.1e-28 129.0 196 41.8
Gohir.D12G277300 Gossypium hirsutum HOM05D000306 ORTHO05D000410 9.1e-28 127.9 196 40.3
Duzib068G1038 Durio zibethinus HOM05D000306 ORTHO05D000410 1.2e-27 127.5 196 41.8
vmacro16591 Vaccinium macrocarpon HOM05D000306 ORTHO05D000410 1.6e-27 127.1 194 39.2
Rhsim08G0168400 Rhododendron simsii HOM05D000306 ORTHO05D000410 4.5e-27 125.6 194 40.2
Cfa019075 Carpinus fangiana HOM05D000306 ORTHO05D000410 5.9e-27 125.2 196 40.3
QL10p012493 Quercus lobata HOM05D000306 ORTHO05D000410 7.7e-27 124.8 199 41.2
Haze_07445 Corylus avellana HOM05D000306 ORTHO05D000410 2.9e-26 122.9 197 41.1
Gorai.003G109800 Gossypium raimondii HOM05D000306 ORTHO05D000410 2.9e-26 122.9 191 40.8
Gohir.D03G104100 Gossypium hirsutum HOM05D000306 ORTHO05D000410 3.8e-26 122.5 191 40.8
Solyc03g113920.4 Solanum lycopersicum HOM05D000306 ORTHO05D000410 5.0e-26 122.1 199 41.7
Sopen03g032970 Solanum pennellii HOM05D000306 ORTHO05D000410 5.0e-26 122.1 199 41.7
Lj9C453T2 Lonicera japonica HOM05D000306 ORTHO05D000410 6.5e-26 121.7 204 36.3
Actinidia19082 Actinidia chinensis HOM05D000306 ORTHO05D000410 1.1e-25 120.9 196 39.3
Gohir.A03G061900 Gossypium hirsutum HOM05D000306 ORTHO05D000410 1.1e-25 120.9 191 40.8
Lj4g0015244 Lotus japonicus HOM05D000306 ORTHO05D000410 1.1e-25 120.9 194 42.8
Lalb_Chr13g0297941 Lupinus albus HOM05D000306 ORTHO05D000410 1.5e-25 120.6 193 39.4
PGSC0003DMG400024475 Solanum tuberosum HOM05D000306 ORTHO05D000410 1.5e-25 120.6 201 40.8
Actinidia34956 Actinidia chinensis HOM05D000306 ORTHO05D000410 1.9e-25 120.2 196 39.3
Ca_21895_v3 Cicer arietinum L. HOM05D000306 ORTHO05D000410 1.9e-25 120.2 192 41.1
Hund02713 Selenicereus undatus HOM05D000306 ORTHO05D000410 1.9e-25 120.2 187 43.3
CSS0003018 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D000410 2.5e-25 119.8 199 39.2
CSS0015029 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D000410 2.5e-25 119.8 199 39.2
Glyma.05G034600 Glycine max HOM05D000306 ORTHO05D000410 2.5e-25 119.8 194 40.7
MD14G1185500 Malus domestica HOM05D000306 ORTHO05D000410 3.2e-25 119.4 200 38.5
Rhsim12G0162100 Rhododendron simsii HOM05D000306 ORTHO05D000410 5.5e-25 118.6 194 37.1
VMungo1215G1533 Vigna mungo HOM05D000306 ORTHO05D000410 5.5e-25 118.6 197 39.6
Cc04_g13430 Coffea canephora HOM05D000306 ORTHO05D000410 1.2e-24 117.5 201 39.3
Peaxi162Scf00017g00248 Petunia axillaris HOM05D000306 ORTHO05D000410 1.6e-24 117.1 200 40.0
arahy.Tifrunner.gnm1.ann1.13F19V Arachis hypogaea HOM05D000306 ORTHO05D000410 1.4e-23 114.0 196 39.8
arahy.Tifrunner.gnm1.ann1.SYM6HI Arachis hypogaea HOM05D000306 ORTHO05D000410 1.4e-23 114.0 196 39.8
Medtr4g106810 Medicago truncatula HOM05D000306 ORTHO05D000410 1.4e-23 114.0 194 40.7
Dinv20693 Davidia involucrata HOM05D000306 ORTHO05D000410 1.8e-23 113.6 206 36.9
TPR.G37569 Trifolium pratense HOM05D000306 ORTHO05D000410 2.3e-23 113.2 194 40.2
Lj5A121G95 Lonicera japonica HOM05D000306 ORTHO05D000410 6.8e-23 111.7 202 39.6
Psat4g056120 Pisum sativum HOM05D000306 ORTHO05D000410 3.4e-22 109.4 194 37.6
Nitab4.5_0013311g0010 Nicotiana tabacum HOM05D000306 ORTHO05D000410 4.4e-22 109.0 190 40.5
Nitab4.5_0001286g0040 Nicotiana tabacum HOM05D000306 ORTHO05D000410 2.4e-20 103.2 190 38.9
Nitab4.5_0000026g0440 Nicotiana tabacum HOM05D000306 ORTHO05D000410 3.1e-20 102.8 197 36.5
DCAR_026115 Daucus carota HOM05D000306 ORTHO05D000410 5.4e-20 102.1 196 32.7
Cc04_g13390 Coffea canephora HOM05D000306 ORTHO05D000410 5.9e-19 98.6 204 37.3
Nitab4.5_0001887g0040 Nicotiana tabacum HOM05D000306 ORTHO05D000410 5.0e-18 95.5 198 35.4
CAN.G853.7 Capsicum annuum HOM05D000306 ORTHO05D000410 6.5e-18 95.1 163 41.1
CSS0006526 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D000410 8.6e-18 94.7 164 39.0
Prupe.5G178300 Prunus persica HOM05D000306 ORTHO05D000410 5.5e-17 92.0 108 48.1
vmacro19359 Vaccinium macrocarpon HOM05D000306 ORTHO05D000410 9.5e-17 91.3 218 32.6
Lsat_1_v5_gn_4_73301 Lactuca sativa HOM05D000306 ORTHO05D000410 2.1e-16 90.1 194 32.5
PGR083G0033 Punica granatum HOM05D000306 ORTHO05D000410 2.1e-16 90.1 204 33.3
DCAR_016504 Daucus carota HOM05D000306 ORTHO05D000410 3.0e-15 86.3 194 29.4
CsaV3_1G001770 Cucumis sativus L. HOM05D000306 ORTHO05D000410 4.4e-14 82.4 201 32.3
PSO832G2823 Papaver somniferum HOM05D000306 ORTHO05D000410 1.3e-13 80.9 204 32.4
Lalb_Chr12g0201451 Lupinus albus HOM05D000306 ORTHO05D000410 1.7e-13 80.5 125 35.2
PSO063G0865 Papaver somniferum HOM05D000306 ORTHO05D000410 2.2e-13 80.1 204 31.9
Dinv09173 Davidia involucrata HOM05D000306 ORTHO05D000410 7.0e-12 75.1 190 30.5
MELO3C017117.2 Cucumis melo HOM05D000306 ORTHO05D000410 9.2e-12 74.7 200 30.5
ECA232G1293 Erigeron canadensis HOM05D000306 ORTHO05D000410 5.9e-11 72.0 197 31.0
CSS0001473 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D000410 1.3e-10 70.9 265 26.8
CSS0031501 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D000410 1.3e-10 70.9 265 26.8
CSS0013820 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D110013 1.9e-09 67.0 198 29.8
CSS0049138 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D109278 1.9e-09 67.0 198 29.8
Rhsim08G0168500 Rhododendron simsii HOM05D000306 ORTHO05D000410 2.5e-09 66.6 108 38.9
HanXRQChr09g0271761 Helianthus annuus HOM05D000306 ORTHO05D000410 3.3e-09 66.2 196 32.1
Sed0021292 Sechium edule HOM05D000306 ORTHO05D000410 5.6e-09 65.5 191 30.4
Migut.D01792 Erythranthe guttata HOM05D000306 ORTHO05D000410 7.3e-09 65.1 198 32.8
Sed0013604 Sechium edule HOM05D000306 ORTHO05D000410 4.7e-08 62.4 138 34.8
HanXRQChr02g0036741 Helianthus annuus HOM05D000306 ORTHO05D000410 6.1e-08 62.0 191 29.3
Rhsim08G0168600 Rhododendron simsii HOM05D000306 ORTHO05D023263 6.1e-08 62.0 102 37.3
vmacro19360 Vaccinium macrocarpon HOM05D000306 ORTHO05D023263 1.4e-07 60.8 165 30.3
SalBow3G1709 Salvia bowleyana HOM05D000306 ORTHO05D000410 3.4e-06 56.2 203 26.1


User provided reference genes

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