Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 1.6e-224 782.3 379 100.0
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.5e-156 556.6 441 64.4
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 9.5e-156 553.9 441 63.9
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 9.0e-138 494.2 472 59.1
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 2.7e-134 482.6 450 57.3
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 7.8e-134 481.1 455 55.2
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 2.1e-131 473.0 463 53.6
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 4.8e-131 471.9 473 54.5
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 2.4e-130 469.5 445 54.6
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 5.3e-130 468.4 451 54.5
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 1.5e-129 466.8 445 54.2
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 2.0e-129 466.5 462 54.3
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 5.8e-129 464.9 449 54.1
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 5.8e-129 464.9 449 55.9
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 6.4e-128 461.5 460 54.1
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 8.4e-128 461.1 448 52.9
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 1.9e-127 459.9 442 53.4
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 2.4e-127 459.5 448 52.7
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 3.2e-127 459.1 444 54.5
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 5.4e-127 458.4 450 52.9
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 7.1e-127 458.0 449 53.7
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 1.2e-126 457.2 448 52.2
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 1.0e-125 454.1 448 52.0
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 2.3e-125 453.0 457 54.0
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 3.0e-125 452.6 468 52.6
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 6.7e-125 451.4 445 53.0
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 1.1e-124 450.7 440 54.1
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 2.5e-124 449.5 457 53.2
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 5.6e-124 448.4 460 52.2
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 9.6e-124 447.6 444 53.2
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 2.1e-123 446.4 459 51.0
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 2.8e-123 446.0 467 52.2
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 8.1e-123 444.5 450 52.9
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 3.1e-122 442.6 455 51.2
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 3.1e-122 442.6 474 50.6
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 5.8e-121 438.3 458 53.1
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 1.3e-120 437.2 450 51.6
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 1.3e-120 437.2 472 49.2
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 1.7e-120 436.8 473 50.5
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 2.2e-120 436.4 448 52.0
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 8.4e-120 434.5 468 49.4
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.9e-119 433.3 478 50.8
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 3.2e-119 432.6 520 47.3
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 4.2e-119 432.2 475 49.7
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 5.5e-119 431.8 460 51.1
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 4.6e-118 428.7 455 50.5
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 6.0e-118 428.3 452 52.2
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 1.0e-117 427.6 422 52.6
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 3.9e-117 425.6 450 51.1
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 5.1e-117 425.2 449 52.1
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 5.1e-117 425.2 437 53.5
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 1.9e-116 423.3 451 49.2
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 1.9e-116 423.3 451 49.2
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 3.3e-116 422.5 441 49.9
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 4.3e-116 422.2 457 49.5
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 9.6e-116 421.0 458 50.2
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 9.6e-116 421.0 441 49.7
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 9.6e-116 421.0 441 49.7
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 1.6e-115 420.2 454 50.9
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 2.1e-115 419.9 453 51.0
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 4.8e-115 418.7 456 50.9
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 1.1e-114 417.5 450 50.9
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 1.1e-114 417.5 452 49.3
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 5.3e-114 415.2 447 50.1
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 1.2e-113 414.1 447 48.5
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 5.8e-113 411.8 450 50.2
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 7.6e-113 411.4 452 48.7
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 1.0e-112 411.0 450 50.0
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 1.0e-112 411.0 443 49.4
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 1.0e-112 411.0 433 51.7
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 1.3e-112 410.6 445 48.5
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 3.8e-112 409.1 459 49.2
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 8.4e-112 407.9 458 49.8
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 7.1e-111 404.8 464 48.7
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 6.0e-110 401.7 482 46.5
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 7.9e-110 401.4 429 51.3
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 6.7e-109 398.3 494 45.7
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 1.1e-108 397.5 488 45.3
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 2.8e-107 392.9 463 46.7
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 3.7e-107 392.5 448 49.3
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 8.2e-107 391.3 436 49.8
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 5.3e-106 388.7 464 47.0
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 2.6e-105 386.3 487 44.8
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 2.9e-104 382.9 402 51.5
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 3.2e-103 379.4 472 45.6
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 6.1e-102 375.2 473 45.9
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 6.7e-101 371.7 411 50.1
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 3.3e-100 369.4 404 49.5
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 1.9e-95 353.6 443 44.9
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 3.9e-93 345.9 438 45.7
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 1.0e-88 331.3 305 56.1
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 1.0e-85 321.2 366 48.9
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 2.3e-85 320.1 366 48.4
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 3.0e-85 319.7 355 51.3
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 8.2e-83 311.6 351 50.7
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 1.1e-82 311.2 341 51.0
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 2.2e-80 303.5 333 51.4
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 5.0e-80 302.4 351 47.3
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 3.8e-72 276.2 254 57.5
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 1.1e-71 274.6 409 38.6
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 6.1e-70 268.9 392 41.8
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 4.4e-68 262.7 434 36.4
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.3e-67 261.2 433 36.5
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 8.3e-67 258.5 511 33.7
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 5.5e-63 245.7 486 32.3
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 5.7e-60 235.7 437 33.0
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 4.0e-45 186.4 233 44.2
MD17G1281000 Malus domestica HOM05D006460 ORTHO05D008143 6.2e-38 162.5 219 42.5
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.8e-37 161.0 141 62.4
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 5.2e-37 159.5 141 61.7
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 2.6e-28 130.6 471 26.1
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 6.0e-25 119.4 278 30.6
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 1.7e-24 117.9 455 24.4
Hund09679 Selenicereus undatus HOM05D006460 ORTHO05D008143 2.4e-21 107.5 116 51.7
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 1.9e-18 97.8 123 43.1
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.7e-16 91.3 224 33.5
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 2.3e-16 90.9 93 40.9
QL04p085746 Quercus lobata HOM05D006460 ORTHO05D008143 6.6e-16 89.4 107 42.1
QL05p033637 Quercus lobata HOM05D000101 ORTHO05D000089 3.4e-12 77.0 68 52.9
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 3.4e-12 77.0 52 73.1
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 9.3e-10 68.9 97 34.0
CDE02G3709 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 2.7e-09 67.4 99 38.4


User provided reference genes

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