Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 0.0e+00 1156.0 603 100.0
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 5.2e-164 582.0 612 56.5
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.3e-143 513.5 528 55.9
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 4.3e-142 509.2 528 55.1
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 7.3e-134 481.9 527 53.3
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 2.1e-120 437.2 557 47.4
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 1.5e-110 404.4 545 46.2
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.6e-109 401.0 554 47.5
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 7.9e-104 382.1 530 43.0
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 1.8e-103 380.9 528 44.5
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 3.7e-101 373.2 543 41.4
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 1.8e-100 370.9 545 42.9
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 3.1e-100 370.2 550 42.5
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 9.0e-100 368.6 549 42.4
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.2e-99 368.2 551 41.6
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 2.0e-99 367.5 566 41.9
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 7.6e-99 365.5 589 40.7
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.3e-98 364.8 551 41.4
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 1.7e-98 364.4 544 42.8
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 3.2e-97 360.1 546 41.0
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 3.2e-97 360.1 546 41.0
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 5.5e-97 359.4 536 41.2
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.2e-96 358.2 552 42.0
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.6e-96 357.8 546 42.3
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 1.0e-95 355.1 657 37.3
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.8e-95 354.4 631 39.1
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 8.7e-95 352.1 496 42.9
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 1.1e-94 351.7 510 43.3
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 1.9e-94 350.9 549 40.8
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 2.8e-93 347.1 599 38.6
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 6.3e-93 345.9 528 41.5
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 2.4e-92 344.0 599 37.4
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 2.4e-92 344.0 532 41.9
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 6.9e-92 342.4 530 42.8
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 6.9e-92 342.4 582 40.4
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.5e-91 341.3 546 42.3
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 1.3e-90 338.2 546 40.8
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 2.2e-90 337.4 608 38.5
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 2.9e-90 337.0 598 39.6
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 5.0e-90 336.3 565 40.7
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.5e-89 334.0 574 39.9
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 5.5e-89 332.8 589 39.2
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 7.2e-89 332.4 587 39.2
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 1.2e-88 331.6 567 39.3
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 1.6e-88 331.3 574 39.4
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 2.1e-88 330.9 532 39.1
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 3.6e-88 330.1 627 35.9
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 6.1e-88 329.3 570 38.9
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 6.1e-88 329.3 526 41.6
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.0e-87 328.6 539 40.3
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 3.0e-87 327.0 676 36.2
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 8.8e-87 325.5 576 39.6
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.7e-85 321.2 576 39.4
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 3.7e-85 320.1 685 35.0
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 8.2e-85 318.9 670 35.4
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 3.1e-84 317.0 648 33.6
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.5e-83 314.7 557 39.0
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 2.2e-82 310.8 564 37.1
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.9e-82 310.5 562 39.0
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 5.0e-82 309.7 564 39.7
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 6.5e-82 309.3 494 40.7
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 9.4e-81 305.4 454 41.2
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 6.1e-80 302.8 668 35.8
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 6.1e-80 302.8 528 39.0
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 7.9e-80 302.4 538 37.7
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 1.8e-79 301.2 614 36.0
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 6.7e-79 299.3 578 36.5
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 8.8e-79 298.9 538 37.4
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 1.1e-78 298.5 495 39.0
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 3.3e-78 297.0 555 38.0
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 1.3e-77 295.0 505 38.8
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 3.7e-77 293.5 673 35.8
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 4.8e-77 293.1 552 37.1
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 6.3e-77 292.7 502 38.0
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 8.2e-77 292.4 518 40.0
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 1.1e-76 292.0 554 36.6
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 3.1e-76 290.4 555 36.9
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 3.1e-76 290.4 494 37.9
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 2.6e-75 287.3 555 36.6
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 4.5e-75 286.6 527 36.8
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 7.7e-75 285.8 590 35.1
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.0e-74 285.4 529 38.9
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 1.3e-74 285.0 618 35.6
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 5.0e-74 283.1 683 31.8
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 5.5e-73 279.6 622 34.9
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 1.2e-72 278.5 645 32.7
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 1.6e-72 278.1 662 33.2
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 2.1e-72 277.7 670 32.8
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 1.4e-71 275.0 588 35.0
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 2.6e-70 270.8 588 34.5
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 4.4e-70 270.0 477 38.4
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 7.0e-68 262.7 690 32.2
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 8.5e-66 255.8 532 37.4
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.0e-63 248.8 275 50.9
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.8e-63 248.1 205 61.0
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 5.2e-63 246.5 412 40.3
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 4.8e-61 240.0 675 29.8
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 4.8e-61 240.0 239 51.0
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 6.3e-61 239.6 838 28.2
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 3.6e-56 223.8 396 40.4
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 1.7e-50 204.9 603 29.5
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 4.3e-49 200.3 190 52.6
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 2.0e-46 191.4 546 31.7
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 3.4e-46 190.7 410 35.1
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 4.4e-46 190.3 221 48.9
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.7e-45 188.3 454 29.3
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.1e-44 183.7 450 28.9
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.2e-43 182.2 406 36.0
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 2.0e-43 181.4 182 53.8
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 5.9e-43 179.9 673 26.7
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 3.9e-42 177.2 453 28.9
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 3.7e-37 160.6 147 58.5
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 4.1e-36 157.1 195 46.2
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 6.6e-34 149.8 291 37.8
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.2e-27 129.0 122 49.2
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 3.3e-25 120.9 144 43.1
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 8.1e-24 116.3 177 37.3
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 1.8e-23 115.2 153 41.2
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 1.8e-23 115.2 172 41.9
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 2.2e-21 108.2 126 43.7
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.2e-21 108.2 82 68.3
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 1.2e-19 102.4 180 34.4
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 3.9e-18 97.4 181 35.9
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 3.9e-18 97.4 181 35.9
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.8e-16 91.3 59 69.5
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.8e-15 88.6 80 57.5
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-13 82.0 143 38.5
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 8.4e-13 79.7 99 35.4
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 7.1e-12 76.6 316 27.8
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 2.1e-11 75.1 139 34.5
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 4.6e-11 73.9 107 38.3
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 1.1e-07 62.8 105 36.2
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 5.3e-07 60.5 123 32.5
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 6.9e-07 60.1 105 37.1
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 6.9e-07 60.1 105 37.1
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 1.2e-06 59.3 103 34.0
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 1.2e-06 59.3 105 36.2
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 1.2e-06 59.3 105 36.2
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 1.2e-06 59.3 105 36.2
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 1.2e-06 59.3 105 35.2
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 1.2e-06 59.3 105 33.3
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.5e-06 58.9 105 35.2
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 2.0e-06 58.5 107 35.5
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 3.4e-06 57.8 106 36.8
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 7.6e-06 56.6 105 32.4
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 7.6e-06 56.6 86 39.5


User provided reference genes

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