Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 0.0e+00 1540.4 831 100.0
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1257.7 925 73.7
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1081.6 904 66.3
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 4.5e-299 1031.2 906 63.9
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 1.4e-297 1026.2 901 63.2
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 2.4e-297 1025.4 891 63.9
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 2.4e-297 1025.4 901 63.5
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 4.2e-297 1024.6 916 63.3
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 1.2e-296 1023.1 905 63.5
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.6e-296 1022.7 899 63.3
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 4.6e-296 1021.1 901 62.9
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 3.9e-295 1018.1 888 64.2
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 4.3e-294 1014.6 902 63.4
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 5.6e-294 1014.2 903 63.1
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 9.6e-294 1013.4 886 63.1
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 2.1e-293 1012.3 901 62.6
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.0e-290 1003.4 891 62.5
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 1.3e-290 1003.0 910 62.2
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 1.3e-290 1003.0 907 61.7
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 4.9e-290 1001.1 921 61.7
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 1.1e-289 1000.0 907 63.1
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 1.1e-289 1000.0 907 62.1
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 1.4e-289 999.6 897 61.6
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 3.2e-289 998.4 906 61.1
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 3.5e-288 995.0 893 62.3
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 6.0e-288 994.2 869 62.5
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 7.9e-288 993.8 906 61.8
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 1.3e-287 993.0 896 62.3
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 2.3e-287 992.3 904 61.9
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 3.0e-287 991.9 907 61.6
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 1.1e-286 989.9 896 61.7
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 1.1e-286 989.9 879 63.1
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 1.3e-285 986.5 939 60.4
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 3.7e-285 984.9 879 62.3
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 1.4e-284 983.0 884 62.3
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 1.8e-284 982.6 898 59.1
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 5.3e-284 981.1 898 61.8
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 6.9e-284 980.7 908 60.8
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 1.2e-283 979.9 905 61.1
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 2.6e-283 978.8 906 60.5
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 4.5e-283 978.0 901 61.6
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 5.9e-283 977.6 893 60.9
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 5.9e-283 977.6 897 61.2
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 7.6e-283 977.2 873 62.0
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 7.6e-283 977.2 898 61.4
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 7.6e-283 977.2 902 61.1
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 1.7e-282 976.1 904 61.0
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 1.1e-281 973.4 928 60.6
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.1e-281 973.4 892 60.7
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 2.5e-281 972.2 901 60.9
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 2.5e-281 972.2 898 61.5
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 3.2e-281 971.8 912 60.4
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 4.2e-281 971.5 924 59.7
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 5.5e-281 971.1 880 61.0
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 7.9e-280 967.2 874 62.2
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 1.8e-279 966.1 912 61.2
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.8e-279 966.1 892 60.2
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 1.8e-279 966.1 891 60.6
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 6.7e-279 964.1 923 59.3
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 2.5e-278 962.2 911 61.4
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 2.5e-278 962.2 904 60.1
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 4.3e-278 961.4 901 60.4
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 2.2e-277 959.1 896 60.4
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 2.2e-277 959.1 894 60.0
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 3.7e-277 958.4 906 60.0
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 1.2e-275 953.4 881 60.6
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 3.4e-275 951.8 896 60.0
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 7.7e-275 950.7 899 59.8
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 1.0e-274 950.3 933 58.6
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.3e-274 949.9 892 59.6
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 1.7e-274 949.5 906 60.3
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 5.0e-274 948.0 907 60.1
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 6.5e-274 947.6 849 62.0
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 1.1e-273 946.8 851 63.1
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 3.2e-273 945.3 902 59.0
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 5.5e-273 944.5 879 59.7
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 7.2e-273 944.1 900 58.9
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 3.0e-271 938.7 894 59.2
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 8.8e-271 937.2 896 59.6
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 1.1e-270 936.8 916 58.5
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 4.3e-270 934.9 917 57.6
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 1.7e-269 932.9 879 60.1
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 1.1e-268 930.2 904 57.7
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.4e-268 929.1 901 59.2
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 5.3e-268 927.9 916 58.6
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 5.3e-268 927.9 916 58.6
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 9.1e-268 927.2 916 58.6
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 2.0e-267 926.0 892 59.4
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 1.7e-266 922.9 901 59.0
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 2.9e-266 922.2 897 58.4
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 5.5e-265 917.9 900 57.9
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 2.1e-264 916.0 859 60.8
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 1.0e-263 913.7 897 58.8
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 2.3e-263 912.5 878 61.0
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 5.1e-263 911.4 852 59.4
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 1.5e-262 909.8 878 60.7
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 2.0e-262 909.4 958 55.6
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 4.4e-262 908.3 909 58.3
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 9.7e-262 907.1 932 57.7
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.1e-260 903.7 891 58.2
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 1.1e-260 903.7 871 58.9
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 1.2e-259 900.2 989 54.1
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 5.5e-257 891.3 994 52.6
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 7.2e-257 891.0 847 59.4
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 8.0e-256 887.5 891 56.2
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 5.2e-255 884.8 941 54.0
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 5.2e-255 884.8 888 57.1
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 1.1e-249 867.1 895 54.9
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 1.9e-241 839.7 898 55.6
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 7.2e-241 837.8 832 56.5
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 1.4e-236 823.5 789 57.5
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.3e-234 817.0 892 51.9
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 8.0e-232 807.7 848 56.7
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 2.0e-230 803.1 901 52.2
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 5.0e-218 761.9 892 49.2
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 8.6e-218 761.1 872 48.4
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 2.4e-212 743.0 750 55.2
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 6.0e-211 738.4 772 57.3
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 3.1e-207 726.1 738 54.5
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.8e-205 719.2 531 76.6
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 6.0e-203 711.8 866 49.7
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 8.6e-202 708.0 733 57.4
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 8.9e-199 698.0 575 62.4
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 9.0e-191 671.4 505 67.1
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 4.8e-184 649.0 734 53.1
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.2e-156 556.6 451 73.4
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.3e-153 546.6 381 71.4
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 9.7e-153 545.0 416 67.5
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.5e-148 529.3 278 90.3
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 3.5e-134 483.4 665 47.1
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 1.6e-131 474.6 360 66.1
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 7.5e-129 465.7 362 66.3
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 2.4e-127 460.7 505 57.2
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.4e-114 418.3 443 54.9
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 7.8e-110 402.5 330 60.9
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 5.6e-108 396.4 985 33.4
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 2.9e-104 384.0 895 32.0
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 2.3e-98 364.4 326 57.7
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 3.1e-98 364.0 705 37.2
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.6e-97 360.9 520 48.7
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 5.6e-92 343.2 550 41.6
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 6.6e-85 319.7 1028 30.4
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 6.4e-72 276.6 379 52.5
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 1.0e-69 269.2 165 75.2
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 4.2e-55 220.7 261 49.0
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 3.9e-45 187.6 106 83.0
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 2.4e-42 178.3 147 74.1
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 2.3e-37 161.8 121 62.0
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 4.8e-35 154.1 106 69.8
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 1.9e-31 142.1 111 68.5
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 8.8e-21 106.7 77 68.8
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 8.3e-19 100.1 80 66.2
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.0e-16 93.2 61 73.8
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.0e-12 79.0 89 51.7
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 4.4e-12 77.8 117 47.9
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 4.8e-11 74.3 88 51.1
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.8e-10 72.4 57 63.2
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.4e-10 72.0 55 65.5
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 4.1e-10 71.2 53 69.8
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 2.0e-09 68.9 58 60.3
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.1e-07 63.2 52 61.5
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 3.3e-07 61.6 66 48.5
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 7.2e-07 60.5 40 67.5
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 3.6e-06 58.2 47 63.8


User provided reference genes

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