Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 4.4e-155 551.2 272 100.0
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 2.4e-132 475.7 272 86.8
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 3.8e-130 468.4 272 86.4
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 1.3e-127 459.9 269 84.0
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 1.5e-115 419.9 264 79.2
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 4.5e-115 418.3 271 75.3
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 4.5e-115 418.3 271 75.3
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 2.2e-114 416.0 271 74.9
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 3.8e-114 415.2 279 76.0
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 3.8e-114 415.2 279 76.0
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 8.4e-114 414.1 280 75.7
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.1e-113 413.7 279 75.6
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.1e-113 413.7 279 75.6
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 4.2e-113 411.8 264 78.4
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 3.5e-112 408.7 267 77.9
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 4.6e-112 408.3 272 75.4
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 1.0e-111 407.1 258 77.5
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 1.0e-111 407.1 266 75.9
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 1.8e-111 406.4 256 79.7
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 3.0e-111 405.6 264 76.1
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 3.9e-111 405.2 266 76.7
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 5.1e-111 404.8 272 73.9
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 8.7e-111 404.1 269 74.7
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 3.3e-110 402.1 272 74.6
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 4.3e-110 401.7 271 73.4
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 7.4e-110 401.0 272 75.0
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 1.6e-109 399.8 274 73.4
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 3.7e-109 398.7 261 76.6
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 6.3e-109 397.9 254 76.8
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 1.1e-108 397.1 268 72.8
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 1.4e-108 396.7 260 76.2
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 2.4e-108 396.0 270 73.7
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 2.4e-108 396.0 268 73.5
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 3.1e-108 395.6 270 74.4
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 4.1e-108 395.2 257 76.3
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 5.3e-108 394.8 260 74.6
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 5.3e-108 394.8 263 75.7
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 6.9e-108 394.4 268 73.5
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 6.9e-108 394.4 255 76.1
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 9.0e-108 394.0 278 71.6
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 9.0e-108 394.0 272 73.9
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 1.2e-107 393.7 261 77.8
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 2.0e-107 392.9 278 71.2
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 7.7e-107 391.0 274 72.3
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 7.7e-107 391.0 257 75.5
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 1.3e-106 390.2 304 69.1
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 1.7e-106 389.8 272 73.2
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 2.9e-106 389.0 261 75.9
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 3.8e-106 388.7 263 73.4
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 6.5e-106 387.9 286 70.6
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 1.1e-105 387.1 253 74.7
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 1.1e-105 387.1 254 76.8
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 1.1e-105 387.1 266 71.1
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.1e-105 387.1 269 71.7
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 1.4e-105 386.7 278 71.9
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 4.2e-105 385.2 261 74.3
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 2.7e-104 382.5 270 73.0
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 3.6e-104 382.1 272 70.6
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 6.1e-104 381.3 269 69.5
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 1.0e-103 380.6 259 71.4
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.4e-103 380.2 270 71.1
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 1.8e-103 379.8 265 72.8
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.3e-103 379.4 266 71.4
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 5.1e-103 378.3 271 71.2
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 6.7e-103 377.9 254 74.0
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 7.4e-102 374.4 269 69.9
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 1.3e-101 373.6 266 70.3
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 1.3e-101 373.6 266 71.4
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 3.7e-101 372.1 279 68.1
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 3.7e-101 372.1 279 68.1
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 4.8e-101 371.7 253 73.5
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 6.3e-101 371.3 284 68.3
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 6.3e-101 371.3 281 67.3
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 6.3e-101 371.3 281 67.3
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 1.1e-100 370.5 259 70.7
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 1.8e-100 369.8 263 71.5
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 3.1e-100 369.0 264 70.5
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 4.1e-100 368.6 267 70.0
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 5.3e-100 368.2 269 69.9
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 6.9e-100 367.9 263 71.1
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 6.9e-100 367.9 263 71.1
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 9.1e-100 367.5 207 82.6
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 2.6e-99 365.9 275 68.0
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 4.5e-99 365.2 259 69.5
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 4.5e-99 365.2 265 69.1
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 5.9e-99 364.8 263 69.6
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 1.0e-98 364.0 311 61.4
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 2.2e-98 362.8 207 81.2
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 2.9e-98 362.5 263 69.6
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 3.8e-98 362.1 262 69.5
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 5.0e-98 361.7 246 73.6
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 2.5e-97 359.4 261 69.0
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 3.2e-97 359.0 284 67.3
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 9.4e-97 357.5 263 68.4
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 6.7e-95 351.3 304 60.9
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 1.5e-94 350.1 276 67.8
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 1.5e-94 350.1 255 69.8
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 3.3e-94 349.0 256 69.5
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 9.7e-94 347.4 262 67.2
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.7e-93 346.7 221 75.6
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 2.8e-93 345.9 205 78.5
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 1.1e-92 344.0 266 66.2
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 7.0e-92 341.3 253 67.2
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 1.6e-91 340.1 262 65.6
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.5e-89 333.6 189 86.2
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 9.4e-89 330.9 250 63.6
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 4.2e-81 305.4 265 63.4
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 8.0e-80 301.2 213 71.8
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 3.0e-79 299.3 256 62.5
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 4.5e-75 285.4 187 74.3
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 7.7e-75 284.6 255 60.0
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 2.5e-73 279.6 253 58.9
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 4.2e-73 278.9 198 68.2
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 1.2e-72 277.3 305 50.8
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 1.6e-72 276.9 189 72.5
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 1.6e-67 260.4 186 67.7
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 3.6e-64 249.2 173 69.9
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 3.0e-63 246.1 186 64.0
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 1.5e-62 243.8 274 46.7
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 9.8e-62 241.1 204 57.4
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 7.0e-60 235.0 233 48.1
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 2.3e-50 203.4 170 58.2
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 3.9e-50 202.6 258 48.8
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 8.9e-47 191.4 190 50.0
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 8.9e-39 164.9 228 44.7
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 9.9e-38 161.4 302 34.8
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 5.8e-30 135.6 84 81.0
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 1.1e-28 131.3 170 40.0
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 7.8e-27 125.2 274 30.7
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 1.5e-25 120.9 81 77.8
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 1.3e-21 107.8 57 87.7
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 1.7e-21 107.5 54 92.6
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 2.7e-19 100.1 52 88.5
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.4e-07 61.2 178 28.7
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.4e-07 61.2 178 28.7
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 2.4e-07 60.5 151 31.8
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 3.1e-07 60.1 174 27.0
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 9.0e-07 58.5 182 28.0
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 1.2e-06 58.2 177 29.4
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.2e-06 58.2 185 27.0
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 1.5e-06 57.8 56 60.7
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 1.5e-06 57.8 180 26.7
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 2.0e-06 57.4 190 25.8
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 2.6e-06 57.0 185 26.5
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 2.6e-06 57.0 178 29.2
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 3.4e-06 56.6 182 26.9
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 4.5e-06 56.2 176 27.8
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 4.5e-06 56.2 184 30.4
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 5.8e-06 55.8 176 25.6
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 5.8e-06 55.8 178 27.5
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 7.6e-06 55.5 178 27.5
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 7.6e-06 55.5 175 27.4
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 7.6e-06 55.5 164 26.2
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 1.0e-05 55.1 179 29.6
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 1.0e-05 55.1 187 27.3
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.0e-05 55.1 180 25.6


User provided reference genes

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