Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 0.0e+00 1157.9 561 100.0
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 3.0e-275 951.4 545 81.5
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 5.2e-275 950.7 543 82.0
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.0e-274 948.7 547 81.5
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 6.6e-262 907.1 544 77.9
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 1.5e-261 906.0 545 77.4
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 2.5e-261 905.2 542 78.0
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 4.2e-261 904.4 545 76.5
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 9.5e-261 903.3 547 76.6
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-260 902.9 547 76.6
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 1.6e-260 902.5 547 76.4
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 1.6e-260 902.5 542 77.9
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 2.1e-260 902.1 543 77.0
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 3.6e-260 901.4 543 76.1
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 3.6e-260 901.4 543 77.0
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 4.7e-260 901.0 542 78.0
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 6.1e-260 900.6 547 76.4
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 6.1e-260 900.6 547 76.6
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 6.1e-260 900.6 542 77.9
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 6.1e-260 900.6 542 77.1
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 2.3e-259 898.7 564 74.6
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 3.0e-259 898.3 545 76.3
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 4.0e-259 897.9 542 77.9
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 4.0e-259 897.9 556 76.3
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 5.2e-259 897.5 542 77.9
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 6.8e-259 897.1 544 76.8
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 1.2e-258 896.3 545 76.3
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.2e-258 896.3 542 77.1
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.5e-258 896.0 545 76.3
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 4.4e-258 894.4 545 76.1
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 5.7e-258 894.0 545 76.0
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 5.7e-258 894.0 542 76.4
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 7.5e-258 893.6 542 77.5
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 9.8e-258 893.3 544 76.7
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.3e-257 892.9 542 77.3
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 1.3e-257 892.9 546 75.6
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 1.7e-257 892.5 543 75.7
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 2.9e-257 891.7 543 75.7
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 6.4e-257 890.6 555 75.0
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 6.4e-257 890.6 543 75.7
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 8.3e-257 890.2 547 75.5
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 8.3e-257 890.2 544 75.6
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.1e-256 889.8 542 76.4
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.4e-256 889.4 545 76.0
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.8e-256 889.0 545 76.0
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 2.4e-256 888.6 542 76.2
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 3.2e-256 888.3 547 75.9
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.2e-256 888.3 542 75.8
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 4.1e-256 887.9 545 75.4
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.1e-256 887.9 546 75.3
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 9.2e-256 886.7 549 74.5
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 1.6e-255 885.9 545 74.9
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 2.0e-255 885.6 546 75.1
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.0e-255 885.6 546 74.9
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 3.5e-255 884.8 542 75.5
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 5.9e-255 884.0 546 74.9
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 5.9e-255 884.0 545 76.0
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 7.8e-255 883.6 544 75.4
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.0e-254 883.2 545 75.4
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 1.7e-254 882.5 546 76.0
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 2.3e-254 882.1 543 75.3
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 2.3e-254 882.1 547 76.2
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 5.0e-254 880.9 545 75.8
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 6.6e-254 880.6 543 75.1
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 6.6e-254 880.6 543 75.3
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 6.6e-254 880.6 545 75.4
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 1.1e-253 879.8 550 74.7
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 1.1e-253 879.8 543 75.5
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.1e-253 879.8 542 75.5
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 1.1e-253 879.8 544 74.8
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 2.5e-253 878.6 543 75.3
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 2.5e-253 878.6 552 74.1
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 3.3e-253 878.2 588 71.1
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 4.3e-253 877.9 547 75.3
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 5.6e-253 877.5 548 74.3
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 9.5e-253 876.7 548 73.9
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.2e-252 876.3 543 75.1
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 2.8e-252 875.2 550 75.6
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 2.8e-252 875.2 547 74.8
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 4.7e-252 874.4 548 74.1
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 1.8e-251 872.5 545 74.7
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 1.5e-250 869.4 543 74.8
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 2.0e-250 869.0 546 74.4
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 7.5e-250 867.1 542 75.8
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 1.3e-249 866.3 586 70.3
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.2e-249 865.5 550 73.8
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 2.9e-249 865.1 544 73.3
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 6.0e-247 857.4 543 74.6
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.3e-246 856.3 545 72.7
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 5.0e-246 854.4 545 72.7
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.2e-244 849.7 544 73.2
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 3.1e-243 845.1 528 76.1
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 2.9e-241 838.6 543 72.9
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 3.7e-241 838.2 528 75.0
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.5e-237 826.2 543 71.1
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 1.1e-235 820.1 543 70.3
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.2e-235 817.8 547 69.8
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 8.9e-235 817.0 547 69.7
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.2e-231 806.6 542 70.5
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 7.8e-231 803.9 494 75.7
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.9e-230 801.6 550 68.7
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 1.8e-227 792.7 544 67.8
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 1.8e-227 792.7 547 69.5
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 2.4e-227 792.3 543 69.8
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 4.4e-226 788.1 545 68.8
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 9.3e-224 780.4 545 67.3
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.1e-223 779.2 503 73.6
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 3.6e-220 768.5 542 66.2
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 9.6e-213 743.8 538 67.1
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 1.6e-212 743.0 570 65.1
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 1.6e-212 743.0 542 64.2
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 2.1e-212 742.7 451 77.6
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 8.1e-212 740.7 542 64.6
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 6.4e-209 731.1 540 63.1
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 4.3e-205 718.4 534 63.7
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.2e-202 710.3 420 78.6
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 1.0e-201 707.2 540 62.6
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 1.9e-200 703.0 420 77.6
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 3.2e-200 702.2 546 63.6
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 6.7e-198 694.5 541 60.4
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.5e-189 666.0 546 60.1
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.5e-189 666.0 546 60.1
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 5.9e-178 628.2 602 55.5
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 1.1e-147 527.7 323 75.9
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.9e-145 519.6 328 74.4
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 8.9e-142 508.1 545 48.4
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 5.0e-137 492.3 550 49.8
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 8.6e-129 464.9 287 75.3
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 8.6e-129 464.9 303 72.3
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 8.9e-118 428.3 258 76.4
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 1.5e-117 427.6 332 64.5
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 2.5e-96 357.1 199 82.4
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.7e-76 291.2 507 38.3
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 4.8e-71 273.1 336 44.6
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 1.8e-62 244.6 186 62.4
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 6.1e-50 203.0 139 67.6
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 1.5e-48 198.4 126 73.0
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 7.0e-46 189.5 124 71.0
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.2e-45 188.7 108 75.0
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 4.5e-45 186.8 132 67.4
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 3.2e-43 180.6 132 65.2
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 3.2e-43 180.6 132 65.2
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.2e-43 179.5 119 68.9
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 5.2e-41 173.3 115 68.7
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.3e-39 168.7 115 67.0
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.3e-39 168.7 115 67.0
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 1.8e-38 164.9 95 76.8
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 5.4e-38 163.3 114 66.7
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 5.4e-38 163.3 114 66.7
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.7e-37 161.0 111 66.7
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 5.0e-36 156.8 76 89.5
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 2.9e-23 114.4 124 45.2
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 3.5e-21 107.5 79 64.6
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 6.0e-21 106.7 215 38.1
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.3e-20 105.5 87 58.6
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 8.6e-20 102.8 123 45.5
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 8.3e-15 86.3 62 62.9
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 3.9e-12 77.4 58 62.1
Pp3s42_50 Physcomitrium patens HOM05D065563 ORTHO05D309536 8.9e-09 66.2 323 21.7


User provided reference genes

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