Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 1.3e-234 817.8 1397 100.0
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 1.3e-72 279.6 1604 43.0
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.9e-48 198.0 1566 45.7
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.4e-47 195.7 1566 43.9
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.5e-46 191.8 427 39.1
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.6e-43 183.0 432 38.9
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.3e-37 162.5 414 37.2
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.1e-35 156.0 400 37.0
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 4.7e-35 154.8 367 53.1
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.3e-32 146.7 175 53.1
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.2e-32 146.0 172 52.9
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.4e-31 143.3 191 51.3
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 7.1e-31 141.0 174 51.7
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 3.5e-30 138.7 175 50.9
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.6e-30 138.3 182 50.5
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 4.6e-30 138.3 172 52.3
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 3.9e-29 135.2 171 48.0
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 3.9e-29 135.2 186 50.0
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 5.1e-29 134.8 166 50.6
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 8.7e-29 134.0 163 51.5
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 8.7e-29 134.0 163 51.5
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.9e-28 132.9 285 37.5
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 3.3e-28 132.1 175 47.4
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 3.3e-28 132.1 201 46.8
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 4.3e-28 131.7 200 47.5
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 7.3e-28 131.0 162 51.2
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 9.6e-28 130.6 168 52.4
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 1.6e-27 129.8 204 46.1
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 1.6e-27 129.8 204 46.1
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 2.1e-27 129.4 182 46.2
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 2.1e-27 129.4 182 50.5
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 2.1e-27 129.4 168 47.0
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 2.8e-27 129.0 173 50.9
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.6e-27 128.6 182 50.5
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 4.8e-27 128.3 173 47.4
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 8.1e-27 127.5 174 48.3
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 1.8e-26 126.3 163 47.9
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 3.1e-26 125.6 283 34.6
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.0e-26 125.2 184 48.4
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 4.0e-26 125.2 184 47.8
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 5.3e-26 124.8 203 43.3
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.3e-26 124.8 182 50.0
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.0e-26 124.0 184 47.8
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 9.0e-26 124.0 212 41.0
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 2.6e-25 122.5 202 43.1
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 3.4e-25 122.1 184 45.1
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 4.5e-25 121.7 168 47.6
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 5.8e-25 121.3 162 48.8
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 5.8e-25 121.3 164 48.2
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 9.9e-25 120.6 202 43.1
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.3e-24 120.2 167 46.7
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 2.2e-24 119.4 194 46.9
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 3.8e-24 118.6 162 47.5
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 4.9e-24 118.2 158 49.4
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 4.9e-24 118.2 160 48.8
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.1e-23 117.1 170 47.6
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.1e-23 117.1 190 44.2
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 1.9e-23 116.3 179 46.4
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 2.4e-23 115.9 162 45.7
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 3.2e-23 115.5 171 43.3
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 9.3e-23 114.0 184 44.6
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.6e-22 113.2 166 45.2
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.6e-22 113.2 152 46.7
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 3.5e-22 112.1 141 50.4
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 3.5e-22 112.1 175 44.6
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 4.6e-22 111.7 166 45.8
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 7.9e-22 110.9 174 44.8
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.0e-21 110.5 200 43.0
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.3e-21 109.4 198 41.4
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.0e-21 109.0 198 40.9
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.0e-21 109.0 197 44.2
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 5.1e-21 108.2 284 39.1
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 8.7e-21 107.5 188 45.7
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.1e-20 107.1 145 48.3
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.3e-19 103.6 181 42.0
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.6e-19 103.2 181 42.0
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.6e-19 103.2 181 42.0
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.8e-19 102.4 166 42.8
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 3.6e-19 102.1 174 42.0
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 8.1e-19 100.9 184 41.3
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 1.8e-18 99.8 177 42.9
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 2.4e-18 99.4 153 47.1
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 2.4e-18 99.4 153 47.1
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 2.4e-18 99.4 153 47.1
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 2.4e-18 99.4 96 56.2
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 3.1e-18 99.0 188 39.9
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 6.9e-18 97.8 186 41.4
AUR62043600 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.0e-18 97.4 159 45.9
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.2e-17 97.1 189 40.2
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 1.2e-17 97.1 194 39.7
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.5e-17 96.7 198 37.9
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 1.5e-17 96.7 96 57.3
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 2.6e-17 95.9 155 45.2
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 2.6e-17 95.9 96 53.1
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 4.5e-17 95.1 191 40.8
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 7.6e-17 94.4 357 27.5
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 9.9e-17 94.0 178 39.9
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 1.3e-16 93.6 266 36.5
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 2.2e-16 92.8 119 49.6
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 6.4e-16 91.3 259 38.2
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 1.1e-15 90.5 261 28.7
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 1.1e-15 90.5 225 32.0
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 1.4e-15 90.1 239 38.5
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 3.2e-15 89.0 166 41.6
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 5.5e-15 88.2 151 43.0
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 7.1e-15 87.8 187 38.5
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.5e-14 85.5 154 40.9
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 4.6e-14 85.1 197 36.0
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 6.0e-14 84.7 144 44.4
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 7.9e-14 84.3 126 50.0
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 7.9e-14 84.3 173 37.6
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.0e-13 84.0 320 35.6
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 2.3e-13 82.8 167 36.5
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 3.9e-13 82.0 188 37.8
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 3.9e-13 82.0 149 40.9
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 8.7e-13 80.9 152 42.8
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 8.7e-13 80.9 198 34.8
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 3.3e-12 79.0 128 43.8
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.4e-12 77.8 71 59.2
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 7.4e-12 77.8 88 46.6
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.3e-11 77.0 94 46.8
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 1.3e-11 77.0 87 50.6
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.6e-11 76.6 186 40.9
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.6e-11 76.6 255 27.8
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.1e-11 76.3 150 38.7
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.7e-11 75.5 198 33.3
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.7e-11 75.5 198 33.3
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 4.0e-10 72.0 186 39.2
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 5.3e-10 71.6 94 43.6
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 9.0e-10 70.9 212 31.6
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.0e-09 69.7 131 40.5
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 2.0e-09 69.7 150 37.3
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 3.4e-09 68.9 162 41.4
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.4e-09 68.9 186 32.3
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 3.4e-09 68.9 96 38.5
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 4.5e-09 68.6 100 49.0
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.3e-08 67.0 87 46.0
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 2.9e-08 65.9 119 43.7
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 4.9e-08 65.1 123 41.5
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 1.1e-07 63.9 77 44.2
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 3.2e-07 62.4 79 41.8
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 4.2e-07 62.0 137 36.5
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 4.2e-07 62.0 286 26.9
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 5.5e-07 61.6 177 33.3
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 1.6e-06 60.1 92 45.7


User provided reference genes

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