Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g043850 Amaranthus hybridus HOM05D000187 ORTHO05D000230 6.0e-92 340.9 180 100.0
Ah.10g033860 Amaranthus hybridus HOM05D000187 ORTHO05D000230 3.7e-41 172.2 146 65.1
AUR62009069 Chenopodium quinoa HOM05D000187 ORTHO05D000230 3.4e-34 149.1 150 58.0
AUR62020599 Chenopodium quinoa HOM05D000187 ORTHO05D000230 3.7e-33 145.6 147 58.5
EL10Ac2g03756 Beta vulgaris HOM05D000187 ORTHO05D000230 2.0e-31 139.8 130 63.1
Hund03291 Selenicereus undatus HOM05D000187 ORTHO05D000230 5.7e-26 121.7 161 50.9
Hund19408 Selenicereus undatus HOM05D000187 ORTHO05D000230 1.6e-20 103.6 153 43.8
Ciclev10007897m.g Citrus clementina HOM05D000187 ORTHO05D000230 5.0e-14 82.0 120 45.0
RcHm_v2.0_Chr6g0304981 Rosa chinensis HOM05D000187 ORTHO05D000230 5.0e-14 82.0 151 40.4
FAN20G1520 Fragaria x ananassa HOM05D000187 ORTHO05D000230 8.6e-14 81.3 151 39.7
Sc09g0010160 Simmondsia chinensis HOM05D000187 ORTHO05D000230 1.1e-13 80.9 156 41.7
FvH4_2g36760 Fragaria vesca HOM05D000187 ORTHO05D000230 1.5e-13 80.5 151 39.7
FAN15G2261 Fragaria x ananassa HOM05D000187 ORTHO05D000230 1.9e-13 80.1 151 39.7
arahy.Tifrunner.gnm1.ann1.9C1SB4 Arachis hypogaea HOM05D000187 ORTHO05D000230 7.3e-13 78.2 128 43.0
FAN27G0017 Fragaria x ananassa HOM05D000187 ORTHO05D000230 1.2e-12 77.4 151 38.4
arahy.Tifrunner.gnm1.ann1.AIUA8N Arachis hypogaea HOM05D000187 ORTHO05D000230 1.6e-12 77.0 128 42.2
CiPaw.07G212600 Carya illinoinensis HOM05D000187 ORTHO05D000230 2.1e-12 76.6 147 37.4
Atru.chr7.2640 Acer truncatum HOM05D000187 ORTHO05D000230 3.6e-12 75.9 141 40.4
Cpa.g.sc23.15 Carica papaya HOM05D000187 ORTHO05D000230 4.7e-12 75.5 154 37.0
VMungo1309G0084 Vigna mungo HOM05D000187 ORTHO05D000230 2.3e-11 73.2 149 39.6
Manes.03G003900 Manihot esculenta HOM05D000187 ORTHO05D000230 4.0e-11 72.4 149 36.2
Potri.018G005600 Populus trichocarpa HOM05D000187 ORTHO05D000230 8.9e-11 71.2 153 35.9
CiPaw.08G019700 Carya illinoinensis HOM05D000187 ORTHO05D000230 2.0e-10 70.1 120 41.7
Gohir.D07G002200 Gossypium hirsutum HOM05D000187 ORTHO05D000230 2.0e-10 70.1 120 39.2
Gorai.001G002000 Gossypium raimondii HOM05D000187 ORTHO05D000230 2.0e-10 70.1 120 39.2
Potri.006G274700 Populus trichocarpa HOM05D000187 ORTHO05D000230 2.6e-10 69.7 154 36.4
Gohir.A06G105800 Gossypium hirsutum HOM05D000187 ORTHO05D000230 3.4e-10 69.3 151 31.1
TWI34G1594 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 3.4e-10 69.3 158 36.1
Ca_15667_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000230 4.4e-10 68.9 155 35.5
Gohir.D06G108000 Gossypium hirsutum HOM05D000187 ORTHO05D000230 7.5e-10 68.2 151 30.5
Gorai.010G122800 Gossypium raimondii HOM05D000187 ORTHO05D000230 7.5e-10 68.2 151 30.5
Dinv03436 Davidia involucrata HOM05D000187 ORTHO05D000230 9.8e-10 67.8 122 38.5
TPR.G12498 Trifolium pratense HOM05D000187 ORTHO05D000230 9.8e-10 67.8 120 40.8
TWI32G1364 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 9.8e-10 67.8 120 37.5
MELO3C011189.2 Cucumis melo HOM05D000187 ORTHO05D000230 1.3e-09 67.4 135 37.0
THA.LOC104799007 Tarenaya hassleriana HOM05D000187 ORTHO05D000230 1.3e-09 67.4 139 35.3
Thecc.09G007100 Theobroma cacao HOM05D000187 ORTHO05D000230 1.3e-09 67.4 158 34.2
Manes.16G135700 Manihot esculenta HOM05D000187 ORTHO05D000230 2.2e-09 66.6 157 35.7
Sabra18G0013700 Salix brachista HOM05D000187 ORTHO05D000230 2.2e-09 66.6 154 36.4
ClCG08G012680 Citrullus lanatus HOM05D000187 ORTHO05D000230 2.9e-09 66.2 140 37.1
MD15G1107900 Malus domestica HOM05D000187 ORTHO05D000230 2.9e-09 66.2 156 37.8
Lj1g0013526 Lotus japonicus HOM05D000187 ORTHO05D000230 3.7e-09 65.9 156 37.8
Actinidia06419 Actinidia chinensis HOM05D000187 ORTHO05D000230 6.4e-09 65.1 121 40.5
Sed0025754 Sechium edule HOM05D000187 ORTHO05D000230 6.4e-09 65.1 122 41.0
Lj7C750G13 Lonicera japonica HOM05D000187 ORTHO05D000230 8.3e-09 64.7 111 38.7
Lalb_Chr23g0269111 Lupinus albus HOM05D000187 ORTHO05D000230 1.1e-08 64.3 157 35.0
Sabra06G0212700 Salix brachista HOM05D000187 ORTHO05D000230 1.1e-08 64.3 154 35.1
Glyma.04G075400 Glycine max HOM05D000187 ORTHO05D000230 1.9e-08 63.5 121 38.8
Medtr3g108808 Medicago truncatula HOM05D000187 ORTHO05D000230 1.9e-08 63.5 120 39.2
Lalb_Chr08g0243551 Lupinus albus HOM05D000187 ORTHO05D000230 4.1e-08 62.4 120 37.5
Prupe.1G460200 Prunus persica HOM05D000187 ORTHO05D000230 4.1e-08 62.4 156 35.9
VMungo0647G0982 Vigna mungo HOM05D000187 ORTHO05D000230 4.1e-08 62.4 122 40.2
CsaV3_2G031390 Cucumis sativus L. HOM05D000187 ORTHO05D000230 5.4e-08 62.0 119 38.7
Eucgr.C02025 Eucalyptus grandis HOM05D000187 ORTHO05D000230 5.4e-08 62.0 120 39.2
Phvul.009G101200 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 5.4e-08 62.0 121 38.8
CSS0044806 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 7.0e-08 61.6 140 36.4
COL.COLO4_19034 Corchorus olitorius HOM05D000187 ORTHO05D000230 7.0e-08 61.6 156 32.1
QL12p025137 Quercus lobata HOM05D000187 ORTHO05D000230 9.2e-08 61.2 120 40.0
MBI16_g27294_MAGBIO Magnolia biondii HOM05D000187 ORTHO05D000230 2.7e-07 59.7 82 39.0
Sopen08g002410 Solanum pennellii HOM05D000187 ORTHO05D000230 2.7e-07 59.7 126 38.1
CANSAT25G2724 Cannabis sativa HOM05D000187 ORTHO05D000230 3.5e-07 59.3 120 40.0
Duzib168G0567 Durio zibethinus HOM05D000187 ORTHO05D000230 3.5e-07 59.3 156 33.3
Solyc08g006460.3 Solanum lycopersicum HOM05D000187 ORTHO05D000230 4.6e-07 58.9 126 37.3
Sed0012007 Sechium edule HOM05D000187 ORTHO05D000230 7.8e-07 58.2 157 38.2
TAR626G0184 Trochodendron aralioides HOM05D000187 ORTHO05D000230 7.8e-07 58.2 120 36.7
Glyma.14G134600 Glycine max HOM05D000187 ORTHO05D000230 2.3e-06 56.6 120 36.7
Peaxi162Scf00045g00175 Petunia axillaris HOM05D000187 ORTHO05D000230 2.3e-06 56.6 114 40.4
Phvul.001G059300 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 2.3e-06 56.6 120 38.3
CARHR202660 Cardamine hirsuta HOM05D000187 ORTHO05D000230 3.9e-06 55.8 150 33.3
Nitab4.5_0004131g0020 Nicotiana tabacum HOM05D000187 ORTHO05D000230 3.9e-06 55.8 120 40.0
PGSC0003DMG402026315 Solanum tuberosum HOM05D000187 ORTHO05D000230 5.0e-06 55.5 115 39.1
Nitab4.5_0001159g0200 Nicotiana tabacum HOM05D000187 ORTHO05D000230 6.6e-06 55.1 121 34.7
Glyma.17G198300 Glycine max HOM05D000187 ORTHO05D000230 8.6e-06 54.7 119 36.1


User provided reference genes

Program Settings