Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 2.8e-192 675.2 371 100.0
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 5.9e-134 481.5 324 79.9
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 6.3e-128 461.5 349 75.9
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 2.2e-112 409.8 336 67.6
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.8e-111 406.8 326 69.6
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 5.5e-108 395.2 295 70.8
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 5.5e-108 395.2 317 69.4
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 9.4e-108 394.4 314 68.5
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 2.3e-106 389.8 304 69.7
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 2.3e-106 389.8 281 77.9
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 4.0e-106 389.0 305 68.2
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 6.8e-106 388.3 281 72.6
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 3.4e-105 386.0 326 66.3
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 4.4e-105 385.6 310 71.3
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.3e-104 384.0 332 61.7
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 8.3e-104 381.3 298 66.8
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.4e-103 380.6 323 67.2
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.8e-103 380.2 287 72.1
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 3.1e-103 379.4 317 68.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 4.1e-103 379.0 328 65.2
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.1e-103 379.0 303 71.6
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 7.0e-103 378.3 333 64.6
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 9.2e-103 377.9 301 67.1
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.6e-102 377.1 301 66.8
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 2.7e-102 376.3 304 70.7
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 5.9e-102 375.2 327 67.6
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.9e-102 375.2 328 64.9
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 7.7e-102 374.8 300 71.0
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 1.7e-101 373.6 318 63.2
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.3e-101 373.2 341 59.2
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 2.3e-101 373.2 338 65.4
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 6.6e-101 371.7 302 68.5
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 6.6e-101 371.7 268 72.8
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 4.3e-100 369.0 320 65.9
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 9.5e-100 367.9 283 70.0
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 9.5e-100 367.9 325 63.7
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 3.6e-99 365.9 315 64.1
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 3.6e-99 365.9 316 63.0
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.4e-98 364.0 297 67.7
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 3.0e-98 362.8 257 71.6
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.0e-98 362.8 329 66.3
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 6.8e-98 361.7 241 74.7
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.5e-97 360.5 296 67.2
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 3.4e-97 359.4 227 77.5
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 9.8e-97 357.8 256 71.1
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 2.9e-96 356.3 326 61.3
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 3.7e-96 355.9 318 64.5
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 4.9e-96 355.5 313 68.7
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.8e-95 353.6 339 62.8
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 7.0e-95 351.7 345 59.7
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 3.5e-94 349.4 258 70.9
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 5.0e-93 345.5 333 59.2
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 1.1e-92 344.4 305 63.6
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.9e-92 343.6 301 65.8
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 3.3e-92 342.8 322 65.2
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 5.6e-92 342.0 202 81.2
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 2.1e-91 340.1 312 64.4
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 2.1e-91 340.1 290 67.2
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 2.8e-91 339.7 310 62.3
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 3.6e-91 339.3 317 62.1
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 1.8e-90 337.0 235 70.6
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.8e-90 337.0 321 63.2
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 4.0e-90 335.9 294 64.6
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 2.0e-89 333.6 296 60.1
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 2.6e-89 333.2 280 68.6
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 7.5e-89 331.6 313 63.9
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 1.3e-88 330.9 271 69.4
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.7e-88 330.5 227 72.7
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.9e-88 329.7 306 63.7
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.1e-87 327.8 278 63.7
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 1.4e-87 327.4 294 60.2
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 1.9e-87 327.0 216 74.1
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.9e-87 327.0 281 66.2
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 5.4e-87 325.5 267 67.8
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 2.0e-86 323.6 304 63.2
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 2.7e-86 323.2 306 63.1
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.7e-85 320.5 293 61.8
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 8.6e-85 318.2 306 63.1
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 2.5e-84 316.6 298 63.4
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 3.3e-84 316.2 360 54.7
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 1.2e-83 314.3 309 61.8
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.6e-83 313.9 293 62.8
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.4e-82 310.8 299 57.9
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.8e-82 310.5 296 63.5
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 2.3e-82 310.1 290 57.9
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 3.1e-82 309.7 325 59.1
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 8.9e-82 308.1 312 59.6
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 5.8e-81 305.4 298 62.1
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 3.7e-80 302.8 232 67.7
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 6.4e-80 302.0 292 61.6
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 8.3e-80 301.6 313 60.4
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 8.3e-80 301.6 330 57.6
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 8.3e-80 301.6 330 57.6
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.9e-79 300.4 292 61.3
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 9.2e-79 298.1 317 59.0
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.1e-78 297.0 313 56.9
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 4.6e-78 295.8 309 60.5
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 6.0e-78 295.4 292 62.7
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.0e-77 294.7 309 60.2
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.7e-77 293.9 202 71.8
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 5.1e-77 292.4 292 62.0
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 5.1e-77 292.4 292 62.0
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 3.6e-75 286.2 280 56.4
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 1.8e-74 283.9 293 59.0
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 2.3e-74 283.5 196 70.4
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 2.6e-73 280.0 250 63.2
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 1.4e-71 274.2 333 55.0
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 1.4e-71 274.2 234 59.8
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 9.9e-65 251.5 255 60.4
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 8.7e-61 238.4 306 46.4
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 9.6e-60 235.0 246 54.1
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 9.6e-60 235.0 135 83.0
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 1.3e-56 224.6 286 50.0
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 2.4e-55 220.3 217 51.6
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.4e-55 220.3 268 54.9
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.5e-52 211.1 367 39.0
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.5e-49 201.1 266 49.6
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 3.5e-46 189.9 124 71.0
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 3.9e-45 186.4 184 56.5
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.6e-38 164.5 182 51.1
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 2.3e-37 160.6 99 78.8
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 3.0e-37 160.2 97 80.4
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 4.3e-36 156.4 177 44.1
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.8e-34 151.0 286 37.1
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 3.8e-32 143.3 259 35.5
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 2.0e-25 120.9 149 58.4
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 3.8e-24 116.7 72 77.8
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-23 114.8 233 29.2
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.6e-22 111.3 196 32.7
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 2.4e-18 97.4 149 47.0
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.9e-16 90.5 153 37.9
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.9e-13 80.1 185 30.3
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.1e-12 78.6 230 28.3
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 6.3e-11 72.8 92 48.9
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 4.5e-09 66.6 63 58.7
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 3.8e-08 63.5 98 30.6


User provided reference genes

Program Settings