Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 5.4e-133 477.6 237 100.0
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 3.9e-46 189.1 183 55.7
AUR62042730 Chenopodium quinoa HOM05D043499 ORTHO05D003195 5.6e-37 158.7 181 51.4
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 2.4e-32 143.3 150 50.7
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 2.4e-24 116.7 158 43.0
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 9.2e-24 114.8 145 46.2
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 3.6e-20 102.8 139 38.8
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 4.7e-20 102.4 137 44.5
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 8.1e-20 101.7 121 42.1
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 1.4e-19 100.9 120 42.5
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.8e-19 100.5 151 39.1
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 3.1e-19 99.8 125 42.4
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 4.0e-19 99.4 125 43.2
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 5.2e-19 99.0 177 37.3
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 5.2e-19 99.0 126 42.9
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 6.8e-19 98.6 103 52.4
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 6.8e-19 98.6 116 43.1
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 6.8e-19 98.6 131 42.7
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 8.9e-19 98.2 133 39.8
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 2.6e-18 96.7 103 51.5
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 4.4e-18 95.9 140 41.4
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 4.4e-18 95.9 160 36.9
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 4.4e-18 95.9 133 45.1
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 1.7e-17 94.0 110 45.5
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 2.2e-17 93.6 130 40.8
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.1e-16 91.3 127 44.1
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 1.1e-16 91.3 104 45.2
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 1.1e-16 91.3 125 41.6
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.4e-16 90.1 146 38.4
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 3.2e-16 89.7 160 35.6
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.2e-16 89.7 160 35.0
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 4.2e-16 89.4 140 38.6
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 4.2e-16 89.4 134 37.3
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 4.2e-16 89.4 169 35.5
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 4.2e-16 89.4 130 42.3
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 5.4e-16 89.0 130 39.2
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 5.4e-16 89.0 104 50.0
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 9.3e-16 88.2 126 40.5
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.2e-15 87.8 160 34.4
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 1.6e-15 87.4 156 37.2
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 1.6e-15 87.4 164 35.4
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 2.1e-15 87.0 172 37.2
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.1e-15 87.0 129 36.4
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 2.1e-15 87.0 111 40.5
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 3.5e-15 86.3 128 39.1
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.0e-15 85.5 166 33.7
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 6.0e-15 85.5 132 39.4
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 6.0e-15 85.5 123 42.3
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 6.0e-15 85.5 127 41.7
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 7.8e-15 85.1 102 46.1
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 1.0e-14 84.7 129 39.5
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.0e-14 84.7 110 40.0
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 1.0e-14 84.7 124 40.3
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 2.3e-14 83.6 126 38.1
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 3.0e-14 83.2 130 40.0
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 3.0e-14 83.2 125 39.2
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 3.9e-14 82.8 106 40.6
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 1.1e-13 81.3 142 40.8
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 1.1e-13 81.3 103 44.7
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 1.9e-13 80.5 158 31.0
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.9e-13 80.5 136 36.0
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 1.9e-13 80.5 105 43.8
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 1.9e-13 80.5 134 39.6
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.9e-13 80.5 145 34.5
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.9e-13 80.5 145 34.5
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 3.3e-13 79.7 110 41.8
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.3e-13 79.3 129 34.9
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 4.3e-13 79.3 136 35.3
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 5.6e-13 79.0 141 39.0
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 5.6e-13 79.0 125 40.0
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 5.6e-13 79.0 121 41.3
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 7.3e-13 78.6 117 41.0
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 7.3e-13 78.6 124 41.1
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 9.6e-13 78.2 107 41.1
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 9.6e-13 78.2 136 37.5
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 1.6e-12 77.4 157 36.3
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.6e-12 77.4 117 35.9
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 2.1e-12 77.0 118 39.8
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 2.1e-12 77.0 120 34.2
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 3.6e-12 76.3 135 36.3
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 4.8e-12 75.9 102 43.1
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 6.2e-12 75.5 115 41.7
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.1e-11 74.7 127 37.8
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.4e-11 74.3 126 37.3
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 2.4e-11 73.6 94 41.5
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 2.4e-11 73.6 103 36.9
AUR62038789 Chenopodium quinoa HOM05D043499 ORTHO05D003195 3.1e-11 73.2 110 41.8
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 3.1e-11 73.2 106 39.6
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.1e-11 73.2 136 33.1
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 3.1e-11 73.2 145 37.2
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 4.0e-11 72.8 105 38.1
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 4.0e-11 72.8 97 39.2
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 5.3e-11 72.4 115 35.7
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 5.3e-11 72.4 121 33.1
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 6.9e-11 72.0 103 36.9
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 2.0e-10 70.5 154 35.7
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 2.0e-10 70.5 107 41.1
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 3.4e-10 69.7 106 41.5
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 3.4e-10 69.7 106 41.5
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 4.4e-10 69.3 140 33.6
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 5.8e-10 68.9 137 34.3
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 5.8e-10 68.9 137 34.3
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 5.8e-10 68.9 137 34.3
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 7.6e-10 68.6 98 37.8
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 7.6e-10 68.6 95 37.9
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 7.6e-10 68.6 95 38.9
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 9.9e-10 68.2 193 28.0
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.3e-09 67.8 116 33.6
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 1.3e-09 67.8 100 37.0
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 3.8e-09 66.2 140 35.7
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 4.9e-09 65.9 103 39.8
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 8.4e-09 65.1 101 35.6
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 1.1e-08 64.7 124 36.3
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 1.1e-08 64.7 100 34.0
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 1.1e-08 64.7 105 40.0
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.1e-08 64.7 91 44.0
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 2.4e-08 63.5 106 35.8
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 3.2e-08 63.2 137 29.9
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 4.2e-08 62.8 100 33.0
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 4.2e-08 62.8 106 32.1
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 5.4e-08 62.4 100 41.0
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 5.4e-08 62.4 101 35.6
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 7.1e-08 62.0 120 32.5
vmacro04447 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 7.1e-08 62.0 91 39.6
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 9.3e-08 61.6 96 36.5
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 1.2e-07 61.2 179 27.9
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 1.2e-07 61.2 104 34.6
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 2.7e-07 60.1 136 30.9
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 2.7e-07 60.1 204 29.4
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 2.7e-07 60.1 104 33.7
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 3.5e-07 59.7 104 32.7
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 4.6e-07 59.3 134 29.9
Aa31LG2G16400 Aethionema arabicum HOM05D009953 ORTHO05D003195 6.0e-07 58.9 87 41.4
CDE08G1351 Ceratophyllum demersum HOM05D003792 ORTHO05D003195 6.0e-07 58.9 88 38.6
SGA_v2.0_scaffold14G07003 Striga asiatica HOM05D000207 ORTHO05D000606 1.0e-06 58.2 75 41.3
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 1.0e-06 58.2 100 34.0
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.3e-06 57.8 79 38.0
BcaNung03785 Brassica carinata HOM05D009953 ORTHO05D003195 1.3e-06 57.8 91 38.5
BolC1t00464H Brassica oleracea HOM05D009953 ORTHO05D003195 1.3e-06 57.8 91 38.5
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.3e-06 57.8 95 32.6
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 1.3e-06 57.8 110 35.5
A01p04400 Brassica napus HOM05D009953 ORTHO05D003195 2.3e-06 57.0 67 43.3
C01p04800 Brassica napus HOM05D009953 ORTHO05D003195 2.3e-06 57.0 67 43.3
PSO170G6463 Papaver somniferum HOM05D003792 ORTHO05D003195 3.0e-06 56.6 91 39.6
AT4G33980 Arabidopsis thaliana HOM05D009953 ORTHO05D003195 3.9e-06 56.2 103 37.9
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 5.1e-06 55.8 96 32.3
CARHR242110 Cardamine hirsuta HOM05D009953 ORTHO05D003195 6.6e-06 55.5 103 35.9
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.6e-06 55.5 96 32.3
Oeu049982.1 Olea europaea HOM05D003792 ORTHO05D003195 6.6e-06 55.5 86 33.7


User provided reference genes

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