Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g038880 Amaranthus hybridus HOM05D003126 ORTHO05D005034 1.3e-134 483.0 239 100.0
AUR62023054 Chenopodium quinoa HOM05D003126 ORTHO05D005034 1.5e-34 150.6 102 72.5
AUR62009373 Chenopodium quinoa HOM05D003126 ORTHO05D005034 8.4e-33 144.8 101 70.3
Thecc.01G412800 Theobroma cacao HOM05D003126 ORTHO05D005034 2.5e-21 106.7 102 52.0
Haze_03230 Corylus avellana HOM05D003126 ORTHO05D005034 1.6e-20 104.0 100 51.0
Cfa010743 Carpinus fangiana HOM05D003126 ORTHO05D005034 2.1e-20 103.6 100 51.0
QL04p005483 Quercus lobata HOM05D003126 ORTHO05D005034 4.8e-20 102.4 102 51.0
ClCG10G012470 Citrullus lanatus HOM05D003126 ORTHO05D005034 8.2e-20 101.7 96 51.0
GSVIVG01032066001 Vitis vinifera HOM05D003126 ORTHO05D005034 1.4e-19 100.9 100 52.0
Glyma.08G153100 Glycine max HOM05D003126 ORTHO05D005034 2.4e-19 100.1 97 53.6
TWI73G1191 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 2.4e-19 100.1 98 53.1
CSS0008425 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D005034 4.0e-19 99.4 99 55.6
CSS0039626 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D005034 4.0e-19 99.4 99 55.6
Phvul.005G036300 Phaseolus vulgaris HOM05D003126 ORTHO05D005034 4.0e-19 99.4 99 51.5
Glyma.15G272900 Glycine max HOM05D003126 ORTHO05D005034 6.9e-19 98.6 98 50.0
Manes.10G145600 Manihot esculenta HOM05D003126 ORTHO05D005034 6.9e-19 98.6 96 47.9
Atru.chr11.2643 Acer truncatum HOM05D003126 ORTHO05D005034 9.0e-19 98.2 101 47.5
Lj3g0014064 Lotus japonicus HOM05D003126 ORTHO05D005034 9.0e-19 98.2 100 50.0
Oeu010350.1 Olea europaea HOM05D003126 ORTHO05D005034 1.2e-18 97.8 113 47.8
arahy.Tifrunner.gnm1.ann1.6ZH3JQ Arachis hypogaea HOM05D003126 ORTHO05D005034 1.5e-18 97.4 99 52.5
arahy.Tifrunner.gnm1.ann1.4P5PRD Arachis hypogaea HOM05D003126 ORTHO05D005034 2.0e-18 97.1 99 52.5
Nitab4.5_0000634g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 2.6e-18 96.7 104 49.0
Ca_14367_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 3.4e-18 96.3 119 46.2
Oeu047556.1 Olea europaea HOM05D003126 ORTHO05D005034 4.5e-18 95.9 102 47.1
Dinv43457 Davidia involucrata HOM05D003126 ORTHO05D005034 5.8e-18 95.5 100 48.0
Prupe.2G010500 Prunus persica HOM05D003126 ORTHO05D005034 5.8e-18 95.5 100 48.0
Sopen01g033970 Solanum pennellii HOM05D003126 ORTHO05D005034 5.8e-18 95.5 102 51.0
CsaV3_3G032240 Cucumis sativus L. HOM05D003126 ORTHO05D005034 7.6e-18 95.1 96 49.0
Gohir.A08G027600 Gossypium hirsutum HOM05D003126 ORTHO05D005034 1.0e-17 94.7 100 52.0
Gohir.D08G038300 Gossypium hirsutum HOM05D003126 ORTHO05D005034 1.3e-17 94.4 102 51.0
Lalb_Chr25g0283141 Lupinus albus HOM05D003126 ORTHO05D005034 1.3e-17 94.4 100 49.0
MELO3C023966.2 Cucumis melo HOM05D003126 ORTHO05D005034 1.7e-17 94.0 96 47.9
Nitab4.5_0003361g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 2.9e-17 93.2 104 47.1
Peaxi162Scf00428g00715 Petunia axillaris HOM05D003126 ORTHO05D005034 3.8e-17 92.8 103 44.7
Sabra09G0047100 Salix brachista HOM05D003126 ORTHO05D005034 3.8e-17 92.8 100 44.0
Sed0002072 Sechium edule HOM05D003126 ORTHO05D005034 3.8e-17 92.8 96 46.9
CiPaw.13G003500 Carya illinoinensis HOM05D003126 ORTHO05D005034 6.5e-17 92.0 100 48.0
Hma1.2p1_0312F.1_g121420 Hydrangea macrophylla HOM05D003126 ORTHO05D005034 6.5e-17 92.0 98 50.0
Solyc01g086980.4 Solanum lycopersicum HOM05D003126 ORTHO05D005034 6.5e-17 92.0 102 47.1
Gorai.004G036800 Gossypium raimondii HOM05D003126 ORTHO05D005034 8.4e-17 91.7 102 49.0
MSTRG.20596 Avicennia marina HOM05D003126 ORTHO05D005034 1.4e-16 90.9 102 48.0
SGA_v2.0_scaffold95G28793 Striga asiatica HOM05D003126 ORTHO05D005034 1.4e-16 90.9 97 47.4
MD07G1007800 Malus domestica HOM05D003126 ORTHO05D005034 1.9e-16 90.5 100 45.0
VMungo1080G1220 Vigna mungo HOM05D003126 ORTHO05D005034 1.9e-16 90.5 104 47.1
TWI09G0721 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 2.5e-16 90.1 98 46.9
CAN.G170.119 Capsicum annuum HOM05D003126 ORTHO05D005034 3.2e-16 89.7 104 47.1
Potri.009G063800 Populus trichocarpa HOM05D003126 ORTHO05D005034 3.2e-16 89.7 98 45.9
CANSAT80G2854 Cannabis sativa HOM05D003126 ORTHO05D005034 4.2e-16 89.4 102 47.1
COL.COLO4_23919 Corchorus olitorius HOM05D003126 ORTHO05D005034 4.2e-16 89.4 98 46.9
Actinidia21560 Actinidia chinensis HOM05D003126 ORTHO05D005034 5.5e-16 89.0 101 44.6
Cpa.g.sc245.7 Carica papaya HOM05D003126 ORTHO05D005034 7.1e-16 88.6 98 49.0
Lj9C630G6 Lonicera japonica HOM05D003126 ORTHO05D005034 7.1e-16 88.6 106 43.4
Rhsim01G0130500 Rhododendron simsii HOM05D003126 ORTHO05D005034 7.1e-16 88.6 102 43.1
vmacro21181 Vaccinium macrocarpon HOM05D003126 ORTHO05D005034 1.6e-15 87.4 98 48.0
Lalb_Chr19g0132091 Lupinus albus HOM05D003126 ORTHO05D005034 3.5e-15 86.3 96 46.9
RcHm_v2.0_Chr1g0314991 Rosa chinensis HOM05D003126 ORTHO05D005034 3.5e-15 86.3 101 48.5
Medtr8g037000 Medicago truncatula HOM05D003126 ORTHO05D005034 4.6e-15 85.9 99 49.5
Sabra16G0164800 Salix brachista HOM05D003126 ORTHO05D005034 4.6e-15 85.9 100 43.0
FAN03G0993 Fragaria x ananassa HOM05D003126 ORTHO05D005034 7.9e-15 85.1 101 48.5
Potri.001G269200 Populus trichocarpa HOM05D003126 ORTHO05D005034 7.9e-15 85.1 100 44.0
Medtr3g028140 Medicago truncatula HOM05D003126 ORTHO05D005034 1.3e-14 84.3 100 49.0
FvH4_7g00830 Fragaria vesca HOM05D003126 ORTHO05D005034 2.3e-14 83.6 101 47.5
FAN06G0385 Fragaria x ananassa HOM05D003126 ORTHO05D005034 2.3e-14 83.6 101 47.5
Sed0019357 Sechium edule HOM05D003126 ORTHO05D005034 2.3e-14 83.6 80 50.0
ECA248G0857 Erigeron canadensis HOM05D003126 ORTHO05D005034 3.0e-14 83.2 96 44.8
Lj7C569G9 Lonicera japonica HOM05D000100 ORTHO05D000052 3.0e-14 83.2 98 44.9
Actinidia20677 Actinidia chinensis HOM05D003126 ORTHO05D005034 3.9e-14 82.8 89 46.1
Ciclev10033914m.g Citrus clementina HOM05D003126 ORTHO05D005034 3.9e-14 82.8 97 44.3
Cc02_g27720 Coffea canephora HOM05D003126 ORTHO05D005034 3.9e-14 82.8 102 44.1
TAR633G1448 Trochodendron aralioides HOM05D003126 ORTHO05D005034 3.9e-14 82.8 105 44.8
Nn1g00624 Nelumbo nucifera HOM05D003126 ORTHO05D005034 5.1e-14 82.4 109 45.0
THA.LOC104809863 Tarenaya hassleriana HOM05D003126 ORTHO05D005034 6.7e-14 82.0 104 46.2
DCAR_006297 Daucus carota HOM05D003126 ORTHO05D005034 8.7e-14 81.6 105 43.8
FAN01G1724 Fragaria x ananassa HOM05D003126 ORTHO05D005034 8.7e-14 81.6 101 46.5
TAR636G3316 Trochodendron aralioides HOM05D003126 ORTHO05D005034 1.5e-13 80.9 107 43.9
FAN10G2088 Fragaria x ananassa HOM05D003126 ORTHO05D005034 1.9e-13 80.5 101 46.5
Duzib268G0285 Durio zibethinus HOM05D003126 ORTHO05D005034 2.5e-13 80.1 100 42.0
Lj3g0024945 Lotus japonicus HOM05D003126 ORTHO05D005034 2.5e-13 80.1 98 44.9
TPR.G28465 Trifolium pratense HOM05D003126 ORTHO05D005034 3.3e-13 79.7 103 43.7
TPR.G12288 Trifolium pratense HOM05D003126 ORTHO05D005034 4.3e-13 79.3 99 45.5
MBI01_g27625_MAGBIO Magnolia biondii HOM05D003126 ORTHO05D005034 7.4e-13 78.6 111 43.2
Migut.N01475 Erythranthe guttata HOM05D003126 ORTHO05D005034 9.7e-13 78.2 100 42.0
HanXRQChr01g0016081 Helianthus annuus HOM05D003126 ORTHO05D005034 1.3e-12 77.8 102 47.1
Nn1g00625 Nelumbo nucifera HOM05D003126 ORTHO05D005034 1.3e-12 77.8 109 43.1
PGR044G1687 Punica granatum HOM05D003126 ORTHO05D005034 3.7e-12 76.3 108 41.7
Ca_23876_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 6.3e-12 75.5 100 45.0
Aa31LG3G10 Aethionema arabicum HOM05D003126 ORTHO05D005034 8.2e-12 75.1 99 41.4
Aqoxy1G00215 Aquilegia oxysepala HOM05D003126 ORTHO05D005034 8.2e-12 75.1 101 41.6
Psat4g148400 Pisum sativum HOM05D003126 ORTHO05D005034 1.4e-11 74.3 97 43.3
Eucgr.J01261 Eucalyptus grandis HOM05D003126 ORTHO05D005034 1.8e-11 73.9 104 42.3
SGA_v2.0_scaffold4G02256 Striga asiatica HOM05D003126 ORTHO05D005034 1.8e-11 73.9 98 41.8
Nn7g36179 Nelumbo nucifera HOM05D003126 ORTHO05D005034 6.9e-11 72.0 128 35.9
HanXRQChr06g0185401 Helianthus annuus HOM05D003126 ORTHO05D005034 4.5e-10 69.3 105 42.9
Lalb_Chr03g0033961 Lupinus albus HOM05D003126 ORTHO05D005034 4.5e-10 69.3 99 43.4
MD02G1314400 Malus domestica HOM05D003126 ORTHO05D005034 7.7e-10 68.6 70 48.6
PSO384G4480 Papaver somniferum HOM05D003126 ORTHO05D005034 2.9e-09 66.6 98 37.8
HPP92_015771 Vanilla planifolia HOM05D003126 ORTHO05D005034 2.9e-09 66.6 98 43.9
PSO339G3182 Papaver somniferum HOM05D003126 ORTHO05D005034 5.0e-09 65.9 98 37.8
Psat5g204360 Pisum sativum HOM05D003126 ORTHO05D005034 1.6e-07 60.8 98 38.8
Zm00001eb079940 Zea mays HOM05D003126 ORTHO05D005034 6.1e-07 58.9 105 35.2
unitig_85.g27215 Utricularia gibba HOM05D003126 ORTHO05D005034 3.0e-06 56.6 98 34.7
CDE07G1013 Ceratophyllum demersum HOM05D003126 ORTHO05D005034 5.1e-06 55.8 106 34.0
BNapus_Darmor_BZH_scaffold_149p00170 Brassica napus HOM05D003126 ORTHO05D005034 6.7e-06 55.5 102 38.2
C01p52530 Brassica napus HOM05D003126 ORTHO05D005034 6.7e-06 55.5 102 38.2
BraA01t04119Z Brassica rapa HOM05D003126 ORTHO05D005034 6.7e-06 55.5 102 38.2
BolC1t05192H Brassica oleracea HOM05D003126 ORTHO05D005034 8.8e-06 55.1 102 38.2
Lsat_1_v5_gn_1_108381 Lactuca sativa HOM05D003126 ORTHO05D005034 8.8e-06 55.1 107 36.4


User provided reference genes

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