Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 0.0e+00 1783.5 935 100.0
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 0.0e+00 1174.1 952 68.5
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 0.0e+00 1170.6 953 68.0
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 0.0e+00 1110.9 942 66.1
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 4.1e-293 1011.5 953 60.8
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.4e-288 996.5 905 64.3
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.8e-227 793.5 880 55.0
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.2e-201 706.8 920 48.7
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.2e-197 692.6 873 49.8
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 2.1e-196 690.3 929 47.7
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.7e-196 689.1 938 47.3
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 4.0e-195 686.0 841 50.4
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.5e-194 684.1 942 48.4
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 3.7e-193 679.5 905 48.3
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.1e-192 676.4 942 48.2
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.0e-191 673.7 894 47.5
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 4.5e-191 672.5 914 48.8
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 5.0e-190 669.1 946 45.9
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.1e-188 663.7 930 47.7
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.0e-187 661.4 932 46.2
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 5.2e-187 659.1 959 47.1
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.3e-185 654.4 921 47.4
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 2.8e-185 653.3 921 47.4
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 4.9e-185 652.5 931 47.3
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 3.1e-184 649.8 893 47.6
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.1e-184 649.4 920 47.2
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 7.0e-184 648.7 920 47.3
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.1e-184 648.3 926 46.2
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.6e-183 647.5 930 46.6
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 2.0e-183 647.1 910 46.3
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.9e-183 645.6 926 46.2
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.3e-182 643.7 948 45.4
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 1.1e-181 641.3 942 46.1
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-181 641.0 926 45.8
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 2.5e-181 640.2 922 47.4
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 4.3e-181 639.4 897 46.3
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 7.2e-181 638.6 924 45.9
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.3e-179 633.6 952 45.8
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.2e-179 632.5 921 47.1
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 3.5e-175 619.8 894 46.2
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 2.3e-174 617.1 932 45.4
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.3e-174 617.1 945 46.1
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.3e-174 617.1 891 46.4
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 4.3e-173 612.8 905 45.5
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.0e-171 608.2 867 45.2
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.4e-171 607.8 905 44.9
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 2.6e-170 603.6 913 45.8
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.4e-170 603.2 946 42.4
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 5.8e-170 602.4 667 55.3
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.2e-169 600.5 944 42.3
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 2.9e-169 600.1 951 43.6
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 8.3e-169 598.6 877 46.3
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.1e-168 598.2 913 45.5
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-168 597.8 843 44.0
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.4e-168 597.8 843 43.9
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.9e-168 597.4 894 45.3
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 4.1e-168 596.3 879 45.1
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.1e-168 596.3 844 44.0
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 5.4e-168 595.9 926 44.4
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.6e-167 594.3 911 44.5
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.6e-167 594.3 905 44.6
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 2.0e-167 594.0 951 44.3
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.3e-166 591.3 885 43.8
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 3.0e-166 590.1 944 44.0
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.0e-166 590.1 939 42.3
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 3.9e-166 589.7 928 44.4
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.1e-165 588.2 899 44.5
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.1e-165 588.2 914 44.9
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.9e-165 587.4 917 45.0
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.5e-165 587.0 902 44.3
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.6e-164 583.2 908 43.9
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 8.9e-163 578.6 941 43.1
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 1.5e-162 577.8 925 44.5
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 6.4e-161 572.4 951 44.0
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 2.1e-159 567.4 842 43.9
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 2.7e-159 567.0 920 42.5
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 3.5e-159 566.6 845 43.9
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 3.5e-159 566.6 884 45.2
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 7.8e-159 565.5 964 42.8
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.6e-158 562.0 774 47.9
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 7.3e-157 558.9 895 44.1
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 9.5e-157 558.5 943 41.9
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.8e-156 557.0 847 43.2
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 4.7e-156 556.2 881 44.2
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 6.2e-156 555.8 842 43.5
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.3e-155 553.9 934 42.8
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.3e-153 548.1 894 44.4
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.4e-152 544.7 877 42.4
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 1.2e-151 541.6 893 42.9
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.7e-150 537.7 893 43.9
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 1.1e-149 535.0 915 42.1
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 9.6e-149 531.9 831 45.0
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.8e-148 530.4 943 41.9
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 4.0e-147 526.6 859 43.1
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 6.8e-147 525.8 880 42.3
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 1.3e-145 521.5 833 44.8
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.9e-144 517.7 1011 39.2
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.4e-144 517.3 938 41.5
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 9.3e-144 515.4 892 41.0
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 3.5e-143 513.5 834 43.5
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 7.3e-141 505.8 896 41.3
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 6.2e-140 502.7 862 42.2
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 8.1e-140 502.3 941 40.8
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 1.1e-139 501.9 881 42.1
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.5e-138 498.0 915 42.0
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.1e-136 491.9 869 42.3
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.6e-135 488.0 850 40.5
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.7e-135 487.3 672 48.5
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.7e-135 487.3 871 41.1
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.0e-134 485.3 892 40.0
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.7e-134 484.6 875 40.5
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.3e-134 484.2 883 40.3
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 3.9e-134 483.4 938 39.8
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 5.6e-133 479.6 601 51.6
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 8.1e-132 475.7 879 40.3
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.2e-130 471.9 948 40.5
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.4e-130 470.3 938 39.8
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.9e-129 467.2 924 39.6
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 8.4e-129 465.7 924 39.6
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.2e-128 463.4 925 38.9
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 4.2e-128 463.4 924 39.8
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-127 461.8 921 40.2
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-127 461.8 918 40.8
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.2e-127 461.8 914 40.0
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.9e-125 454.5 931 39.6
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.9e-125 454.5 931 39.6
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 1.9e-125 454.5 928 39.9
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 6.9e-123 446.0 678 42.8
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.1e-120 438.7 856 38.7
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.2e-119 435.3 929 38.8
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.3e-118 431.8 833 40.6
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 3.3e-117 427.2 852 38.8
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 5.7e-117 426.4 689 44.7
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.6e-111 408.3 850 37.3
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.3e-108 396.4 708 42.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 2.9e-105 387.5 785 38.0
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.8e-102 378.3 642 41.6
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 2.2e-100 371.3 447 52.3
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 6.3e-100 369.8 967 34.1
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.8e-99 368.2 494 48.0
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.1e-93 349.0 864 36.5
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 2.2e-92 344.7 792 35.7
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 5.5e-88 330.1 551 41.0
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 7.5e-85 319.7 620 42.6
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.2e-79 302.4 777 35.1
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.7e-76 290.8 771 31.8
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 8.3e-76 289.7 1013 30.3
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.7e-74 284.6 440 43.9
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.9e-73 281.2 734 32.8
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.8e-68 264.6 755 31.3
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.1e-64 252.7 482 39.8
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 2.3e-62 245.0 285 48.1
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.8e-59 235.3 371 43.4
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 5.4e-59 233.8 761 30.0
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.0e-57 228.0 334 44.9
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 3.0e-57 228.0 440 40.2
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 3.2e-43 181.4 415 37.1
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 5.4e-43 180.6 337 38.6
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.5e-42 177.9 538 29.9
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 6.6e-41 173.7 274 47.8
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.9e-40 172.2 222 46.8
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 7.1e-35 153.7 466 28.8
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.6e-34 152.5 329 39.8
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 2.1e-34 152.1 121 57.9
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.5e-29 136.0 284 38.0
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.6e-26 124.4 116 56.0
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.9e-25 121.3 233 38.2
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.5e-21 109.4 90 56.7
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 2.6e-21 108.6 155 41.9
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.9e-19 102.4 264 34.1
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 6.0e-18 97.4 157 38.9
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 6.2e-15 87.4 81 49.4
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 4.9e-12 77.8 94 43.6
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.1e-10 72.4 118 43.2
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 6.0e-10 70.9 74 66.2
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 7.9e-10 70.5 44 68.2
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 8.7e-09 67.0 103 37.9
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-08 66.2 118 39.8
AUR62012685 Chenopodium quinoa HOM05D000561 ORTHO05D000514 2.1e-07 62.4 123 34.1
AUR62021972 Chenopodium quinoa HOM05D000561 ORTHO05D000514 2.1e-07 62.4 123 34.1
EL10Ac8g20031 Beta vulgaris HOM05D000561 ORTHO05D000514 8.2e-07 60.5 122 32.0
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 1.4e-06 59.7 125 35.2
Hund13661 Selenicereus undatus HOM05D003655 ORTHO05D004065 4.0e-06 58.2 72 58.3
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 5.3e-06 57.8 82 34.1


User provided reference genes

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