Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 0.0e+00 1549.6 796 100.0
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 0.0e+00 1245.3 796 83.0
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 0.0e+00 1228.0 771 83.3
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 0.0e+00 1172.9 797 77.3
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1120.1 804 74.9
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 0.0e+00 1118.6 714 81.7
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1111.3 792 74.4
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1108.6 767 75.9
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1108.2 797 73.8
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1105.5 788 75.1
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1099.0 789 74.1
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1088.9 797 72.3
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1087.8 754 76.3
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1084.7 741 76.9
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1083.6 772 74.0
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1083.2 800 72.0
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1080.9 789 72.9
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1079.7 790 72.2
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1078.2 796 71.7
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1077.4 744 76.6
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1075.5 792 73.1
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 5.4e-312 1074.7 792 72.6
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.1e-311 1073.2 798 71.8
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 2.2e-311 1072.0 807 70.6
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 3.2e-310 1068.1 787 72.6
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 7.0e-310 1067.0 794 71.7
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 7.0e-310 1067.0 775 73.0
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 9.1e-310 1066.6 796 71.9
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 9.1e-310 1066.6 791 71.7
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.6e-309 1065.8 798 71.2
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.0e-309 1065.4 798 71.6
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 2.7e-309 1065.1 778 72.2
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 3.5e-309 1064.7 774 72.2
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 3.5e-309 1064.7 800 71.8
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 4.6e-309 1064.3 801 70.8
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 5.9e-309 1063.9 789 71.5
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.0e-308 1063.1 715 77.3
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 1.0e-308 1063.1 795 72.6
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 3.0e-308 1061.6 805 71.2
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.0e-308 1061.6 750 74.4
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 6.6e-308 1060.4 750 74.9
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 4.3e-307 1057.7 795 71.1
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 4.3e-307 1057.7 767 73.3
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 5.6e-307 1057.4 749 74.9
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 2.1e-306 1055.4 784 71.0
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 2.3e-305 1052.0 800 70.6
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 8.9e-305 1050.0 781 72.2
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 5.8e-304 1047.3 728 74.9
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 5.8e-304 1047.3 793 70.6
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 7.5e-304 1047.0 744 74.1
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 1.3e-303 1046.2 780 70.8
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 8.3e-303 1043.5 785 72.0
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 1.4e-302 1042.7 737 74.5
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 4.1e-302 1041.2 807 69.9
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 1.6e-301 1039.3 791 71.0
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 1.0e-300 1036.6 793 71.0
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.9e-299 1032.3 780 70.5
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 5.6e-299 1030.8 842 67.1
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 7.3e-299 1030.4 786 70.0
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 2.1e-298 1028.9 789 69.3
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 3.6e-298 1028.1 777 70.3
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 4.7e-298 1027.7 801 69.4
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 6.2e-298 1027.3 786 69.7
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 1.8e-297 1025.8 798 69.3
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 3.1e-297 1025.0 807 69.5
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 5.2e-297 1024.2 806 69.7
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 5.2e-297 1024.2 778 70.3
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 8.9e-297 1023.5 771 70.4
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 8.9e-297 1023.5 779 70.2
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 1.5e-296 1022.7 771 70.4
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 4.4e-296 1021.1 791 68.8
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 4.4e-296 1021.1 791 68.8
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 5.8e-296 1020.8 723 74.1
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 1.3e-295 1019.6 791 69.7
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 2.9e-295 1018.5 771 70.0
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 2.9e-295 1018.5 775 69.5
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 1.1e-294 1016.5 771 70.0
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 2.4e-294 1015.4 744 70.3
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 5.4e-294 1014.2 763 70.0
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 6.0e-293 1010.7 793 69.5
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 3.9e-292 1008.1 789 68.1
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 6.6e-292 1007.3 786 68.6
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 6.6e-292 1007.3 782 68.7
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 7.3e-291 1003.8 768 69.4
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 1.6e-290 1002.7 704 75.0
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.7e-287 992.6 822 66.2
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 2.7e-285 985.3 714 73.5
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 6.6e-284 980.7 793 67.7
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.1e-281 973.4 666 75.8
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 4.2e-278 961.4 784 65.9
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 4.6e-277 958.0 792 65.0
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 1.1e-275 953.4 696 73.4
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 2.1e-274 949.1 747 69.5
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 4.8e-274 948.0 791 65.4
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 2.7e-269 932.2 763 64.6
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 3.2e-262 908.7 763 66.1
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.6e-229 800.0 561 72.4
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 4.7e-229 798.5 561 72.0
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.4e-225 786.9 605 71.4
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 5.3e-225 785.0 734 57.6
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 3.8e-223 778.9 741 57.4
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 6.5e-223 778.1 765 55.2
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 9.1e-217 757.7 755 53.8
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.3e-215 753.8 750 54.1
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.2e-206 722.6 549 63.2
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 7.0e-201 704.9 539 63.8
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 3.7e-194 682.6 582 59.8
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 8.1e-181 638.3 546 59.0
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 5.8e-179 632.1 414 76.1
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 7.8e-168 595.1 403 75.4
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.5e-150 537.7 414 62.6
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 1.6e-144 517.7 343 77.0
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 8.5e-130 468.8 269 83.6
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 1.3e-93 348.6 499 41.3
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.0e-87 328.9 690 33.9
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 8.9e-87 325.9 295 59.7
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.2e-85 321.2 277 59.6
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 1.8e-84 318.2 633 40.4
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 4.4e-78 297.0 296 58.4
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 6.6e-66 256.5 351 46.7
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 7.3e-65 253.1 590 31.7
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.2e-38 166.0 99 77.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 6.4e-37 160.2 83 88.0
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 2.6e-30 138.3 108 65.7
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 3.2e-28 131.3 138 52.9
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 4.6e-27 127.5 138 54.3
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 6.9e-23 113.6 54 92.6
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 2.4e-15 88.6 103 45.6
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 4.1e-15 87.8 157 37.6
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 4.2e-12 77.8 54 66.7
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 2.3e-10 72.0 41 80.5
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 3.0e-10 71.6 83 51.8
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 8.8e-10 70.1 60 61.7
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 9.1e-07 60.1 80 46.2
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 2.6e-06 58.5 85 41.2


User provided reference genes

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