Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 5.4e-238 827.4 457 100.0
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 1.8e-185 652.9 457 80.3
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 2.3e-172 609.4 379 79.7
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 9.7e-155 550.8 382 73.3
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 1.6e-149 533.5 380 71.6
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 3.7e-138 495.7 377 66.8
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 1.4e-137 493.8 372 67.5
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 1.1e-134 484.2 375 67.2
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 1.5e-134 483.8 385 64.2
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 2.5e-134 483.0 371 66.0
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 2.5e-134 483.0 371 67.7
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 6.1e-133 478.4 380 65.3
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 1.4e-132 477.2 376 66.2
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 4.0e-132 475.7 371 67.1
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 5.2e-132 475.3 369 65.3
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 6.8e-132 474.9 382 64.1
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.6e-131 473.0 366 66.7
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 2.6e-131 473.0 375 64.3
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 3.4e-131 472.6 380 64.2
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 3.4e-131 472.6 380 64.7
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 5.7e-131 471.9 366 66.4
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 2.8e-130 469.5 366 66.4
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 6.3e-130 468.4 380 63.4
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 6.3e-130 468.4 380 63.4
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 3.1e-129 466.1 419 59.2
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 7.0e-129 464.9 400 63.0
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 1.6e-128 463.8 372 65.3
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 2.7e-128 463.0 381 63.3
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 4.5e-128 462.2 381 62.7
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 3.3e-126 456.1 382 63.4
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 3.3e-126 456.1 344 67.4
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 1.2e-125 454.1 383 63.4
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 1.0e-124 451.1 380 63.4
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 1.0e-124 451.1 351 65.5
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 1.4e-124 450.7 456 54.4
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 8.9e-124 448.0 385 63.1
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 3.4e-123 446.0 386 60.4
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 3.4e-123 446.0 382 63.4
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 9.8e-123 444.5 378 62.4
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 1.7e-122 443.7 373 63.8
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 1.7e-122 443.7 360 65.8
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 3.7e-122 442.6 383 62.1
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 1.1e-121 441.0 380 61.3
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 2.4e-121 439.9 392 62.2
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 3.2e-121 439.5 374 60.7
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 1.2e-120 437.6 369 62.3
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 1.2e-120 437.6 383 61.6
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 1.2e-120 437.6 389 62.2
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 1.2e-120 437.6 376 60.6
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 2.0e-120 436.8 379 61.7
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 2.0e-120 436.8 340 65.9
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 2.7e-120 436.4 344 65.4
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 2.7e-120 436.4 383 61.6
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 2.7e-120 436.4 389 61.4
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 1.3e-119 434.1 386 61.7
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 2.3e-119 433.3 380 60.5
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 5.0e-119 432.2 378 61.6
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 6.6e-119 431.8 337 65.0
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 8.6e-119 431.4 374 62.6
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 1.1e-118 431.0 386 61.7
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 3.3e-118 429.5 380 59.7
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 4.3e-118 429.1 384 59.4
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 4.3e-118 429.1 379 61.5
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 4.3e-118 429.1 362 62.2
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 5.6e-118 428.7 383 61.4
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 9.5e-118 427.9 383 61.4
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 2.1e-117 426.8 377 61.3
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 1.4e-116 424.1 361 62.6
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 1.4e-116 424.1 380 60.8
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.3e-116 423.3 342 64.9
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 6.8e-116 421.8 397 59.2
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 8.9e-116 421.4 360 61.7
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 1.2e-115 421.0 360 61.7
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 1.2e-115 421.0 354 63.6
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 2.6e-115 419.9 378 60.6
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 4.4e-115 419.1 344 62.8
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 5.8e-115 418.7 393 58.8
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 1.3e-114 417.5 372 60.2
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 1.7e-114 417.2 378 60.3
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 8.3e-114 414.8 352 63.1
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 1.4e-113 414.1 385 57.9
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 3.2e-113 412.9 354 61.9
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 2.7e-112 409.8 374 58.0
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 1.3e-111 407.5 382 57.3
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 1.3e-111 407.5 380 58.2
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 6.6e-111 405.2 350 61.1
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 8.6e-111 404.8 371 59.6
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 9.5e-110 401.4 388 57.0
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 8.9e-108 394.8 318 66.0
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 4.1e-105 386.0 295 65.8
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 7.1e-105 385.2 353 58.9
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 6.6e-103 378.6 369 58.0
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 1.9e-89 334.0 379 51.5
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 3.9e-87 326.2 389 48.3
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 6.6e-87 325.5 373 50.1
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 1.9e-86 323.9 240 69.6
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 6.2e-85 318.9 237 69.2
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 9.0e-84 315.1 365 49.6
TAR383G0625 Trochodendron aralioides HOM05D006898 ORTHO05D008506 4.9e-74 282.7 248 62.9
FAN20G0784 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.4e-73 280.4 212 67.5
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 1.1e-68 265.0 371 44.2
Cc03_g11200 Coffea canephora HOM05D006898 ORTHO05D008506 7.6e-67 258.8 205 63.9
Cpa.g.sc117.17 Carica papaya HOM05D006898 ORTHO05D008506 4.9e-66 256.1 213 63.8
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 6.9e-60 235.7 351 40.5
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 2.6e-59 233.8 352 38.6
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 3.6e-56 223.4 224 54.9
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 2.8e-53 213.8 352 39.2
Cc03_g11180 Coffea canephora HOM05D006898 ORTHO05D008506 1.7e-45 188.0 180 60.0
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 2.3e-39 167.5 180 55.0
QL07p037905 Quercus lobata HOM05D006898 ORTHO05D008506 3.1e-28 130.6 70 88.6
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 1.3e-26 125.2 245 34.7
Hma1.2p1_2279F.1_g318700 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 1.2e-22 112.1 93 60.2
Cc00_g34780 Coffea canephora HOM05D006898 ORTHO05D008506 4.1e-20 103.6 100 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2079 Anthoceros agrestis HOM05D006898 ORTHO05D008506 1.2e-16 92.0 112 48.2
CBR_g40185 Chara braunii HOM05D000019 ORTHO05D001702 1.2e-16 92.0 158 40.5
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 2.6e-14 84.3 267 26.2
Actinidia29335 Actinidia chinensis HOM05D006898 ORTHO05D008506 7.5e-14 82.8 125 39.2
VMungo1309G1975 Vigna mungo HOM05D006898 ORTHO05D008506 4.9e-13 80.1 123 43.1
PRCOL_00003584 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 1.1e-12 79.0 271 28.0
HanXRQChr08g0214621 Helianthus annuus HOM05D006898 ORTHO05D008506 5.2e-07 60.1 36 72.2


User provided reference genes

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